mRNA_H-paniculata_contig19546.4950.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19546.4950.1
Unique NamemRNA_H-paniculata_contig19546.4950.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19546.4950.1 vs. uniprot
Match: Q9SMD8_9PHAE (Glycolate oxidase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD8_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 3.000e-43
Identity = 68/78 (87.18%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:   19 QVVQAVSGRCEVYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVEKILKLLNDELVLALQLTGCTRVAS 252
            +VVQAVSGRCEVYLDGGICRGTDVFKA+ALGAKAVFIGRPVLWGL HSGEEGV K+LKLLNDEL++ALQLTGCTR+++
Sbjct:  146 EVVQAVSGRCEVYLDGGICRGTDVFKAIALGAKAVFIGRPVLWGLGHSGEEGVSKVLKLLNDELIMALQLTGCTRISA 223
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BLAST of mRNA_H-paniculata_contig19546.4950.1 vs. uniprot
Match: D8LDI6_ECTSI (Glycolate Oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDI6_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.660e-41
Identity = 70/78 (89.74%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:   19 QVVQAVSGRCEVYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVEKILKLLNDELVLALQLTGCTRVAS 252
            +VV AVSGRCE+YLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGV K+LKLL+DELV+ALQLTGCTRV+S
Sbjct:  301 EVVAAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVSKVLKLLHDELVMALQLTGCTRVSS 378
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BLAST of mRNA_H-paniculata_contig19546.4950.1 vs. uniprot
Match: W7UBQ6_9STRA (Peroxisomal glycolate oxidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UBQ6_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.390e-33
Identity = 56/76 (73.68%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:   22 VVQAVSGRCEVYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVEKILKLLNDELVLALQLTGCTRVA 249
            +V+AV+GRCEVYLDGG+CRGTD FKALALGA+AVFIGRPVLWGLAHSGE+GV ++L+LL  E  +A+QLTGCT+++
Sbjct:  298 IVKAVNGRCEVYLDGGVCRGTDAFKALALGARAVFIGRPVLWGLAHSGEDGVYQVLELLKKEFEMAMQLTGCTKLS 373
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BLAST of mRNA_H-paniculata_contig19546.4950.1 vs. uniprot
Match: A0A7S2V919_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V919_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.630e-32
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:   19 QVVQAVSGRCEVYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVEKILKLLNDELVLALQLTGCTRV 246
            +VV+AV+G CEVY+DGGI RGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGV   L LL +E  +A+QLTGC +V
Sbjct:  245 EVVRAVNGACEVYVDGGILRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVTNALTLLQNEFTMAMQLTGCVKV 320
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BLAST of mRNA_H-paniculata_contig19546.4950.1 vs. uniprot
Match: A0A836CMB2_9STRA (Glycolate oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB2_9STRA)

HSP 1 Score: 123 bits (309), Expect = 6.310e-32
Identity = 56/76 (73.68%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:   19 QVVQAVSGRCEVYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVEKILKLLNDELVLALQLTGCTRV 246
            +VV AV+G+ EVYLDGG+ RGTDVFKALA+GA+AVFIGRPVLWGLAHSGE+GV  +L+L+N+EL +ALQL GCT V
Sbjct:  302 EVVAAVAGKVEVYLDGGVTRGTDVFKALAMGARAVFIGRPVLWGLAHSGEDGVAAVLRLMNEELTMALQLAGCTSV 377
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BLAST of mRNA_H-paniculata_contig19546.4950.1 vs. uniprot
Match: A0A1B6KAW4_9HEMI (FMN hydroxy acid dehydrogenase domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6KAW4_9HEMI)

HSP 1 Score: 115 bits (287), Expect = 1.270e-31
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:    1 PAPNE--KQVVQAVSGRCEVYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVEKILKLLNDELVLALQLTGCTRVAS 252
            PAP E   ++V+AV  RC+++LDGG+  GTDVFKALALGAK VFIGRP LWGLAHSG++GVE IL +L  EL+  + L GCT +AS
Sbjct:    1 PAPIEVLPEIVKAVGDRCDIFLDGGVRSGTDVFKALALGAKMVFIGRPALWGLAHSGQQGVEHILNILKKELITTMTLAGCTSLAS 86
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BLAST of mRNA_H-paniculata_contig19546.4950.1 vs. uniprot
Match: UPI0012EDCCEF (hydroxyacid oxidase 1-like n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012EDCCEF)

HSP 1 Score: 117 bits (294), Expect = 4.480e-31
Identity = 56/78 (71.79%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:   16 KQVVQAVSGRCEVYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVEKILKLLNDELVLALQLTGCTRVA 249
            ++VVQAV GRC+VY+DGG+ RGTDV KALALGAKAVFIGRPVLWGLA  GE+GV +IL+LL DEL LA+ L+GC  V+
Sbjct:  143 EEVVQAVQGRCDVYMDGGVRRGTDVLKALALGAKAVFIGRPVLWGLACQGEQGVTEILELLKDELRLAMALSGCRSVS 220
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BLAST of mRNA_H-paniculata_contig19546.4950.1 vs. uniprot
Match: F6VZQ1_CIOIN (FMN hydroxy acid dehydrogenase domain-containing protein n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6VZQ1_CIOIN)

HSP 1 Score: 118 bits (295), Expect = 3.560e-30
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:   16 KQVVQAVSGRCEVYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVEKILKLLNDELVLALQLTGCTRV 246
            +++VQAV G+CEVYLDGG+  GTDV KA+A GAKAVFIGRPVLWGLAH+G+EGV  +LK+L +E   ALQL GCT +
Sbjct:  275 REIVQAVDGKCEVYLDGGVRNGTDVIKAIAFGAKAVFIGRPVLWGLAHNGQEGVRHVLKMLREEFKTALQLMGCTSI 351
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BLAST of mRNA_H-paniculata_contig19546.4950.1 vs. uniprot
Match: A0A6V1QYU9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QYU9_HETAK)

HSP 1 Score: 117 bits (292), Expect = 1.780e-29
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:   19 QVVQAVSGRCEVYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVEKILKLLNDELVLALQLTGCTRV 246
            ++V AV+ RCE+Y+DGG+ RGTD FKALALG  AVFIGRPVLWGLAHSGEEGV  +L+LL  E  +A+QL GCTRV
Sbjct:  301 EIVAAVNKRCEIYVDGGVLRGTDAFKALALGCTAVFIGRPVLWGLAHSGEEGVAHVLQLLRAEFEMAMQLNGCTRV 376
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BLAST of mRNA_H-paniculata_contig19546.4950.1 vs. uniprot
Match: A0A7S4KCV1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCV1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.900e-29
Identity = 52/76 (68.42%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:   22 VVQAVSGRCEVYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVEKILKLLNDELVLALQLTGCTRVA 249
            + + V+GRCE+Y+DGGI RGTD+FKALALGA+AVFIGRPVLW LAHSGEEGV+ ++ LL DE  LAL L+GCT ++
Sbjct:  307 IAKQVNGRCEIYVDGGIYRGTDIFKALALGARAVFIGRPVLWSLAHSGEEGVKHVIGLLKDEFELALSLSGCTSLS 382
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19546.4950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q9SMD8_9PHAE3.000e-4387.18Glycolate oxidase (Fragment) n=1 Tax=Laminaria dig... [more]
D8LDI6_ECTSI1.660e-4189.74Glycolate Oxidase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
W7UBQ6_9STRA1.390e-3373.68Peroxisomal glycolate oxidase n=2 Tax=Monodopsidac... [more]
A0A7S2V919_9STRA1.630e-3276.32Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CMB2_9STRA6.310e-3273.68Glycolate oxidase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A1B6KAW4_9HEMI1.270e-3162.79FMN hydroxy acid dehydrogenase domain-containing p... [more]
UPI0012EDCCEF4.480e-3171.79hydroxyacid oxidase 1-like n=1 Tax=Anarrhichthys o... [more]
F6VZQ1_CIOIN3.560e-3067.53FMN hydroxy acid dehydrogenase domain-containing p... [more]
A0A6V1QYU9_HETAK1.780e-2969.74Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4KCV1_9STRA1.900e-2968.42Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19546contigH-paniculata_contig19546:2212..3371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score119.4
Seed ortholog evalue8.1e-25
Seed eggNOG ortholog7719.XP_002119255.1
Preferred nameHAO1
KEGG rclassRC00042
KEGG koko:K11517
KEGG ReactionR00475
KEGG Pathwayko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko04146,map00630,map01100,map01110,map01120,map01130,map01200,map04146
KEGG ModuleM00532
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001561,GO:0003674,GO:0003824,GO:0003973,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0006066,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0008891,GO:0009056,GO:0009062,GO:0009441,GO:0009987,GO:0010181,GO:0015031,GO:0015833,GO:0016042,GO:0016043,GO:0016054,GO:0016491,GO:0016614,GO:0016623,GO:0016899,GO:0016903,GO:0017144,GO:0019395,GO:0019752,GO:0030258,GO:0031907,GO:0031974,GO:0032553,GO:0032787,GO:0033036,GO:0033365,GO:0034308,GO:0034310,GO:0034440,GO:0034613,GO:0034641,GO:0036094,GO:0042579,GO:0042737,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046164,GO:0046296,GO:0046395,GO:0046907,GO:0047969,GO:0048037,GO:0050662,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055114,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901575,GO:1901615,GO:1901616
EggNOG free text desc.glycolate catabolic process
EggNOG OGs38BCT@33154,3BA92@33208,3CU9T@33213,488AQ@7711,COG1304@1,KOG0538@2759
EC1.1.3.15
COG Functional cat.C
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929483.390595-CDS-H-paniculata_contig19546:2211..23011622929483.390595-CDS-H-paniculata_contig19546:2211..2301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19546 2212..2301 -
1691480881.411138-CDS-H-paniculata_contig19546:2211..23011691480881.411138-CDS-H-paniculata_contig19546:2211..2301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19546 2212..2301 -
1622929483.4009738-CDS-H-paniculata_contig19546:3209..33711622929483.4009738-CDS-H-paniculata_contig19546:3209..3371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19546 3210..3371 -
1691480881.429156-CDS-H-paniculata_contig19546:3209..33711691480881.429156-CDS-H-paniculata_contig19546:3209..3371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19546 3210..3371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19546.4950.1prot_H-paniculata_contig19546.4950.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19546 2212..3371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19546.4950.1

>prot_H-paniculata_contig19546.4950.1 ID=prot_H-paniculata_contig19546.4950.1|Name=mRNA_H-paniculata_contig19546.4950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
PAPNEKQVVQAVSGRCEVYLDGGICRGTDVFKALALGAKAVFIGRPVLWG
LAHSGEEGVEKILKLLNDELVLALQLTGCTRVAS
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mRNA from alignment at H-paniculata_contig19546:2212..3371-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19546.4950.1 ID=mRNA_H-paniculata_contig19546.4950.1|Name=mRNA_H-paniculata_contig19546.4950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1160bp|location=Sequence derived from alignment at H-paniculata_contig19546:2212..3371- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGCACCCAACGAAAAACAGGTGGTTCAGGCCGTCAGTGGACGTTGCGA
GGTGTACCTTGACGGCGGCATCTGCCGCGGCACGGACGTGTTCAAGGCTT
TGGCTCTTGGCGCCAAGGCAGTGTTCATCGGCCGCCCGGTGCTCTGGGGT
CTTGCCCACAGCGTAAGTGGTACATGCTTCAAACGCAGGCAACTCTCAAG
TTACCCCTCGTAGCTTGGTCCACCCCAGAGAGAGTCCTCGTTGAAATGGA
CCAAGCTGTATAGACCGTTATCTCCTTCGACGTTGGAGTGTTGGCGTCGC
GCCCATTTCCATGTCAAGAGAGTCGAAGCAGTGAGAAGGTCATGTAACCA
TTTGTAGTGCCACTGCAACAGCTGCGTTCTCTGCGACGAAGAAAGTTCCC
CCTCCTTCCTTGACTGTAAGCACTGTCCTACGCGTTGCCTGCTCATCCCC
CCTTTCTAGTTTGGTCGTCTTTAAAAAAGCAATCCAGCAGCTTGAAGGTG
CCGAATATGCTTCCTTTTTTTTTTACGGTGTTTGACATTTTTCTGTAGTA
TCTGCTTCCCTGCGACCTAAGGACACATTTCCACCAGGAGTCCGTTTTTT
TTTTTTCACCAAGCCACACGTTATCTTGTATACCAGACCACCTGTCATCT
TGTGTTGATGTGCATCACCGATGAGATTGATCACGTGTCAGTCTTGCGGC
TCGGGAGCTGCAACAAGTGGATGAACTATACGATGTCCTCTACATTCACA
CACACACAATATTCGACAATTTTAAGGGATCGGATCCAATCCTTCGTAAT
GCAAATTTGAAGTAGCCCAAGTCCACCTTGGCCCCAGAGAAGATGTACCG
GGGGATAATGCTGGGAGATGAGAAGTGCTCATCTTGGCACCATTGCTGTA
TTGATCCTGTCTAAACACTTTGTCAAGTATCAAGATTTCAACAATGAAAT
GTGTATGACTCGTGAATTGACGACGGTTGTCTAGCGGCCAATCTTTGACG
CTGTTCATTTCTCCTTGTTTCCTCCCGCTTGTCTGCTCGTGTGGTTTCGA
ACAACCGAAACCGAAACCAGGGTGAGGAAGGGGTGGAGAAAATTCTGAAG
CTCTTGAACGACGAGCTCGTGTTGGCTCTACAGCTCACGGGCTGCACCCG
GGTCGCATCC
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Coding sequence (CDS) from alignment at H-paniculata_contig19546:2212..3371-

>mRNA_H-paniculata_contig19546.4950.1 ID=mRNA_H-paniculata_contig19546.4950.1|Name=mRNA_H-paniculata_contig19546.4950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig19546:2212..3371- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGCACCCAACGAAAAACAGGTGGTTCAGGCCGTCAGTGGACGTTGCGA
GGTGTACCTTGACGGCGGCATCTGCCGCGGCACGGACGTGTTCAAGGCTT
TGGCTCTTGGCGCCAAGGCAGTGTTCATCGGCCGCCCGGTGCTCTGGGGT
CTTGCCCACAGCCCCGCACCCAACGAAAAACAGGTGGTTCAGGCCGTCAG
TGGACGTTGCGAGGTGTACCTTGACGGCGGCATCTGCCGCGGCACGGACG
TGTTCAAGGCTTTGGCTCTTGGCGCCAAGGCAGTGTTCATCGGCCGCCCG
GTGCTCTGGGGTCTTGCCCACAGCGGTGAGGAAGGGGTGGAGAAAATTCT
GAAGCTCTTGAACGACGAGCTCGTGTTGGCTCTACAGCTCACGGGCTGCA
CCCGGGTCGCATCCGGTGAGGAAGGGGTGGAGAAAATTCTGAAGCTCTTG
AACGACGAGCTCGTGTTGGCTCTACAGCTCACGGGCTGCACCCGGGTCGC
ATCC
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