mRNA_H-paniculata_contig19537.4945.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19537.4945.1
Unique NamemRNA_H-paniculata_contig19537.4945.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19537.4945.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.850e-11
Identity = 35/113 (30.97%), Postives = 59/113 (52.21%), Query Frame = 1 
Query:   58 LALRYAWALPPEKERLLAGVGLTLAAEFGVRERYLRKVWSNAKEQLDRGHTFSLRSARRSERPSGFTPTTQARIREINANNCTLTVKQLSSNLAEVGLEVGSSKLYNWFKPCG 396
            +A+  A  + P   R+  GV   +   +GV ++Y  ++W   K Q+D      L +  RS RPS  TP+  A ++ +N+ N + T++Q+S  L ++GLE G   +  WF   G
Sbjct:    1 MAVEIAMGIQPGFSRIPKGVLDPICERYGVGKKYPSELWKRVKTQIDNTQELDLSNEERSGRPSLLTPSKIAALKTVNSQNRSSTLRQVSDQLTDLGLEFGKDTVRRWFSKLG 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19537.4945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE2.850e-1130.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19537contigH-paniculata_contig19537:1689..2108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size421
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929483.0504906-CDS-H-paniculata_contig19537:1688..21081622929483.0504906-CDS-H-paniculata_contig19537:1688..2108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19537 1689..2108 +
1691480881.263906-CDS-H-paniculata_contig19537:1688..21081691480881.263906-CDS-H-paniculata_contig19537:1688..2108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19537 1689..2108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19537.4945.1prot_H-paniculata_contig19537.4945.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19537 1689..2108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19537.4945.1

>prot_H-paniculata_contig19537.4945.1 ID=prot_H-paniculata_contig19537.4945.1|Name=mRNA_H-paniculata_contig19537.4945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
SESDESGKNCELSEEGRTALALRYAWALPPEKERLLAGVGLTLAAEFGVR
ERYLRKVWSNAKEQLDRGHTFSLRSARRSERPSGFTPTTQARIREINANN
CTLTVKQLSSNLAEVGLEVGSSKLYNWFKPCGQRGVSGA*
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mRNA from alignment at H-paniculata_contig19537:1689..2108+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19537.4945.1 ID=mRNA_H-paniculata_contig19537.4945.1|Name=mRNA_H-paniculata_contig19537.4945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=420bp|location=Sequence derived from alignment at H-paniculata_contig19537:1689..2108+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGAGTCCGACGAGTCAGGGAAAAATTGTGAACTGTCGGAGGAAGGTCG
GACCGCACTTGCTCTGCGGTACGCATGGGCGCTCCCTCCCGAGAAAGAGA
GACTCCTGGCGGGCGTTGGACTTACACTTGCGGCAGAGTTTGGAGTGAGA
GAGAGGTATCTTCGGAAGGTATGGTCAAACGCGAAGGAACAACTGGACAG
GGGGCACACCTTCTCTTTGAGATCAGCACGACGATCGGAACGGCCGTCGG
GCTTCACACCCACGACACAGGCCAGGATTCGGGAAATTAACGCGAACAAT
TGTACGTTGACCGTCAAACAGCTTTCCTCCAACCTAGCCGAAGTGGGCCT
CGAGGTCGGCAGCTCGAAGCTTTACAACTGGTTCAAGCCATGCGGGCAAC
GGGGGGTCAGCGGCGCATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig19537:1689..2108+

>mRNA_H-paniculata_contig19537.4945.1 ID=mRNA_H-paniculata_contig19537.4945.1|Name=mRNA_H-paniculata_contig19537.4945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig19537:1689..2108+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGAGTCCGACGAGTCAGGGAAAAATTGTGAACTGTCGGAGGAAGGTCG
GACCGCACTTGCTCTGCGGTACGCATGGGCGCTCCCTCCCGAGAAAGAGA
GACTCCTGGCGGGCGTTGGACTTACACTTGCGGCAGAGTTTGGAGTGAGA
GAGAGGTATCTTCGGAAGGTATGGTCAAACGCGAAGGAACAACTGGACAG
GGGGCACACCTTCTCTTTGAGATCAGCACGACGATCGGAACGGCCGTCGG
GCTTCACACCCACGACACAGGCCAGGATTCGGGAAATTAACGCGAACAAT
TGTACGTTGACCGTCAAACAGCTTTCCTCCAACCTAGCCGAAGTGGGCCT
CGAGGTCGGCAGCTCGAAGCTTTACAACTGGTTCAAGCCATGCGGGCAAC
GGGGGGTCAGCGGCGCATAATCGGAGTCCGACGAGTCAGGGAAAAATTGT
GAACTGTCGGAGGAAGGTCGGACCGCACTTGCTCTGCGGTACGCATGGGC
GCTCCCTCCCGAGAAAGAGAGACTCCTGGCGGGCGTTGGACTTACACTTG
CGGCAGAGTTTGGAGTGAGAGAGAGGTATCTTCGGAAGGTATGGTCAAAC
GCGAAGGAACAACTGGACAGGGGGCACACCTTCTCTTTGAGATCAGCACG
ACGATCGGAACGGCCGTCGGGCTTCACACCCACGACACAGGCCAGGATTC
GGGAAATTAACGCGAACAATTGTACGTTGACCGTCAAACAGCTTTCCTCC
AACCTAGCCGAAGTGGGCCTCGAGGTCGGCAGCTCGAAGCTTTACAACTG
GTTCAAGCCATGCGGGCAACGGGGGGTCAGCGGCGCATAA
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