mRNA_H-paniculata_contig19534.4944.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19534.4944.1
Unique NamemRNA_H-paniculata_contig19534.4944.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19534.4944.1 vs. uniprot
Match: A0A6H5L1I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.150e-10
Identity = 35/58 (60.34%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   16 LSEETQQGESARVARELPPPPVPATGTTASSDASSVPAWRSQTSSGVDRLQNEGVDVD 189
             SEE +QG    VA  LPPPPVP  GT AS DA++ PAWRSQ+  GV  L  EGVDVD
Sbjct:  295 FSEEQKQGRGDAVAEALPPPPVPVQGTKASPDATTAPAWRSQSMDGVASLHAEGVDVD 352
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19534.4944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1I2_9PHAE4.150e-1060.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19534contigH-paniculata_contig19534:2879..3184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size307
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929482.9822776-CDS-H-paniculata_contig19534:2878..31841622929482.9822776-CDS-H-paniculata_contig19534:2878..3184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19534 2879..3184 +
1691480881.249859-CDS-H-paniculata_contig19534:2878..31841691480881.249859-CDS-H-paniculata_contig19534:2878..3184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19534 2879..3184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19534.4944.1prot_H-paniculata_contig19534.4944.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19534 2879..3184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19534.4944.1

>prot_H-paniculata_contig19534.4944.1 ID=prot_H-paniculata_contig19534.4944.1|Name=mRNA_H-paniculata_contig19534.4944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
HGRAVLSEETQQGESARVARELPPPPVPATGTTASSDASSVPAWRSQTSS
GVDRLQNEGVDVDSAGKWCLADLSAPGAAESAVCPVRAVLDSGDGRSKPA
SG
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mRNA from alignment at H-paniculata_contig19534:2879..3184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19534.4944.1 ID=mRNA_H-paniculata_contig19534.4944.1|Name=mRNA_H-paniculata_contig19534.4944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig19534:2879..3184+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGGTCGGGCAGTGTTGTCGGAGGAGACACAGCAGGGTGAGAGCGCTAG
GGTGGCAAGGGAGTTGCCCCCGCCGCCTGTTCCCGCTACAGGGACAACTG
CGTCGTCCGATGCTTCGTCTGTTCCGGCGTGGAGATCTCAGACATCTTCT
GGAGTCGACCGACTGCAGAATGAGGGTGTCGACGTGGATAGCGCTGGGAA
ATGGTGTTTGGCTGACTTATCTGCGCCAGGGGCAGCCGAGTCTGCGGTGT
GCCCGGTGCGGGCGGTGCTGGATTCTGGGGATGGTCGTTCGAAACCTGCA
AGCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig19534:2879..3184+

>mRNA_H-paniculata_contig19534.4944.1 ID=mRNA_H-paniculata_contig19534.4944.1|Name=mRNA_H-paniculata_contig19534.4944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig19534:2879..3184+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGGTCGGGCAGTGTTGTCGGAGGAGACACAGCAGGGTGAGAGCGCTAG
GGTGGCAAGGGAGTTGCCCCCGCCGCCTGTTCCCGCTACAGGGACAACTG
CGTCGTCCGATGCTTCGTCTGTTCCGGCGTGGAGATCTCAGACATCTTCT
GGAGTCGACCGACTGCAGAATGAGGGTGTCGACGTGGATAGCGCTGGGAA
ATGGTGTTTGGCTGACTTATCTGCGCCAGGGGCAGCCGAGTCTGCGGTGT
GCCCGGTGCGGGCGGTGCTGGATTCTGGGGATGGTCGTTCGAAACCTGCA
AGCGGTCACGGTCGGGCAGTGTTGTCGGAGGAGACACAGCAGGGTGAGAG
CGCTAGGGTGGCAAGGGAGTTGCCCCCGCCGCCTGTTCCCGCTACAGGGA
CAACTGCGTCGTCCGATGCTTCGTCTGTTCCGGCGTGGAGATCTCAGACA
TCTTCTGGAGTCGACCGACTGCAGAATGAGGGTGTCGACGTGGATAGCGC
TGGGAAATGGTGTTTGGCTGACTTATCTGCGCCAGGGGCAGCCGAGTCTG
CGGTGTGCCCGGTGCGGGCGGTGCTGGATTCTGGGGATGGTCGTTCGAAA
CCTGCAAGCGGT
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