mRNA_H-paniculata_contig19523.4942.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19523.4942.1
Unique NamemRNA_H-paniculata_contig19523.4942.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19523.4942.1 vs. uniprot
Match: D7G1C5_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C5_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.540e-49
Identity = 79/105 (75.24%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:    1 MPTAKDEDTRKRNSLMFFMRDWQGLMTFEQQEASMTQVKRYHQMQAIGETDDPVIGKLNKAPLEISLGNMRVLRDTVIMHWKDINRSYQGPLLGDTVLHRVCREG 315
            MPTAKD D R+RNSLMFFMRDWQ   TFE+QEASM Q+K+YHQM+A    DDP++ K+NK PL+ISLG+MR+LR+TVIM WKDINRSYQGPLLG+TVLHRVCREG
Sbjct:   24 MPTAKDMDMRRRNSLMFFMRDWQESSTFEEQEASMLQIKKYHQMEAKVSQDDPILAKMNKIPLQISLGDMRLLRETVIMKWKDINRSYQGPLLGETVLHRVCREG 128
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BLAST of mRNA_H-paniculata_contig19523.4942.1 vs. uniprot
Match: A0A6H5K2B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B1_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.410e-48
Identity = 78/105 (74.29%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:    1 MPTAKDEDTRKRNSLMFFMRDWQGLMTFEQQEASMTQVKRYHQMQAIGETDDPVIGKLNKAPLEISLGNMRVLRDTVIMHWKDINRSYQGPLLGDTVLHRVCREG 315
            MPTAKD D R+RNSLMFFM+DWQ   TFE+QEASM Q+K+YHQM+A    DDP++ K+NK PL+ISLG+MR+LR+TVIM WKDINRSYQGPLLG+TVLHRVCREG
Sbjct:   24 MPTAKDMDMRRRNSLMFFMKDWQESSTFEEQEASMLQIKKYHQMEAKVSQDDPMLAKMNKIPLQISLGDMRLLRETVIMKWKDINRSYQGPLLGETVLHRVCREG 128
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BLAST of mRNA_H-paniculata_contig19523.4942.1 vs. uniprot
Match: A0A7S3M4K0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M4K0_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.150e-6
Identity = 32/103 (31.07%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:   13 KDEDTRKRNSLMFFMRDWQGLMTFEQQEAS--MTQVKRYHQMQAIGETDDPVIGKLNKAPLEISLGNMRVLRDTVIMHWKDINRSYQGPLLGDTVLHRVCREG 315
            +++D R+RNSL F++  +   + +E       +  V++    +  G+       K +K    +  GNM+ LR+ V++++K+INR Y    LG+T+LH VC+EG
Sbjct:   22 EEKDDRRRNSLAFYISQF---VEYEDDNFGPLIELVQKDKNSKNGGKPPTIRNSKFSKIADSVLHGNMKELRNQVVVYFKNINRKYTDHHLGNTLLHMVCQEG 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19523.4942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1C5_ECTSI1.540e-4975.24Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K2B1_9PHAE2.410e-4874.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3M4K0_9STRA3.150e-631.07Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19523contigH-paniculata_contig19523:3512..4261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue2.3e-40
Seed eggNOG ortholog2880.D7G1C5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.temperature-gated cation channel activity
EggNOG OGsCOG0666@1,KOG0510@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size318
Cds size318
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929482.3846164-CDS-H-paniculata_contig19523:3511..37181622929482.3846164-CDS-H-paniculata_contig19523:3511..3718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19523 3512..3718 -
1691480880.9111695-CDS-H-paniculata_contig19523:3511..37181691480880.9111695-CDS-H-paniculata_contig19523:3511..3718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19523 3512..3718 -
1622929482.3992288-CDS-H-paniculata_contig19523:4150..42611622929482.3992288-CDS-H-paniculata_contig19523:4150..4261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19523 4151..4261 -
1691480880.9302945-CDS-H-paniculata_contig19523:4150..42611691480880.9302945-CDS-H-paniculata_contig19523:4150..4261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19523 4151..4261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19523.4942.1prot_H-paniculata_contig19523.4942.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19523 3512..4261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19523.4942.1

>prot_H-paniculata_contig19523.4942.1 ID=prot_H-paniculata_contig19523.4942.1|Name=mRNA_H-paniculata_contig19523.4942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MPTAKDEDTRKRNSLMFFMRDWQGLMTFEQQEASMTQVKRYHQMQAIGET
DDPVIGKLNKAPLEISLGNMRVLRDTVIMHWKDINRSYQGPLLGDTVLHR
VCREG*
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mRNA from alignment at H-paniculata_contig19523:3512..4261-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19523.4942.1 ID=mRNA_H-paniculata_contig19523.4942.1|Name=mRNA_H-paniculata_contig19523.4942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=750bp|location=Sequence derived from alignment at H-paniculata_contig19523:3512..4261- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCACTGCCAAGGATGAAGATACTCGGAAACGCAACTCTCTTATGTT
CTTCATGAGAGACTGGCAGGGCTTGATGACATTCGAGCAGCAGGAGGCAT
CCATGACACAGGTTACTTTCGAAAAGTATATTCGTCCTAGATGGATCTTG
GATGGACACACATCCATTACTTTTTCTCACGTCGCGCTGTCGGCTTTAAT
GATATATCGATGACAAGGCAGTCAGCGCGACAGATCGCAAGCATACATTA
CATACAGTAGTACTTCTTCAGCGATTGGATTAATGGACGCAAGCCATCAA
AACGTCTATTTTTTCATTGCATTGAATCACGTCTCGTTTGGCTGCTTGTT
GGATTCCTAGTTTATATTGATCGATAAACACGGTCGGCCTGGCACTCAGT
TTACTCAAACGTTGTCACAGCTCACAGTCCAAGAACATCGAGGAATTGGC
ATAGAATGTCGATGAGTTGGTCGGTGCTGACAAATGGCATCATCGCGTCT
TCTCCATGCAACGTCTCTTTGCCGTGTTTATCTATCCATGCAGGTGAAGC
GATACCACCAAATGCAAGCTATCGGAGAGACGGATGATCCAGTCATAGGT
AAGCTCAACAAGGCGCCTCTCGAGATCTCCTTGGGAAACATGCGGGTGCT
GCGAGACACCGTTATCATGCACTGGAAGGATATCAATCGTAGCTACCAGG
GCCCACTTCTCGGGGACACGGTGCTGCACAGGGTGTGCCGTGAGGGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig19523:3512..4261-

>mRNA_H-paniculata_contig19523.4942.1 ID=mRNA_H-paniculata_contig19523.4942.1|Name=mRNA_H-paniculata_contig19523.4942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig19523:3512..4261- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCACTGCCAAGGATGAAGATACTCGGAAACGCAACTCTCTTATGTT
CTTCATGAGAGACTGGCAGGGCTTGATGACATTCGAGCAGCAGGAGGCAT
CCATGACACAGATGCCCACTGCCAAGGATGAAGATACTCGGAAACGCAAC
TCTCTTATGTTCTTCATGAGAGACTGGCAGGGCTTGATGACATTCGAGCA
GCAGGAGGCATCCATGACACAGGTGAAGCGATACCACCAAATGCAAGCTA
TCGGAGAGACGGATGATCCAGTCATAGGTAAGCTCAACAAGGCGCCTCTC
GAGATCTCCTTGGGAAACATGCGGGTGCTGCGAGACACCGTTATCATGCA
CTGGAAGGATATCAATCGTAGCTACCAGGGCCCACTTCTCGGGGACACGG
TGCTGCACAGGGTGTGCCGTGAGGGGTAAGTGAAGCGATACCACCAAATG
CAAGCTATCGGAGAGACGGATGATCCAGTCATAGGTAAGCTCAACAAGGC
GCCTCTCGAGATCTCCTTGGGAAACATGCGGGTGCTGCGAGACACCGTTA
TCATGCACTGGAAGGATATCAATCGTAGCTACCAGGGCCCACTTCTCGGG
GACACGGTGCTGCACAGGGTGTGCCGTGAGGGGTAA
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