mRNA_H-paniculata_contig19512.4940.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig19512.4940.1
Unique Name	mRNA_H-paniculata_contig19512.4940.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig19512.4940.1 vs. uniprot
Match: A0A6H5KZC7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZC7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 8.710e-19
Identity = 129/189 (68.25%), Postives = 139/189 (73.54%), Query Frame = 1

Query:  319 DPGKGLEGAQVNQLHVHGGSALMEASTSGNVGVMKLLLKKGADVGVTDKDGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDANASVKASDSYKANLLKAKAASEGGAESSGIVETHTDGVTALMVAAVGGHMDVMHALVGAGADVKAEDEQGFTALLNAVK 885
            DPGKG  G                           LLLKKGADV VTDKDGV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  N +V+AS++YKANLLK+     G  +S    ETHTDGVT+LMVAAVGGHMDVM ALV  GADV+A D+QG +ALLNAVK
Sbjct:  492 DPGKGTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLKKGADVSVTDKDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVNDTVQASETYKANLLKSNT---GEGDSPMGAETHTDGVTSLMVAAVGGHMDVMRALVEGGADVRAVDDQGLSALLNAVK 677

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BLAST of mRNA_H-paniculata_contig19512.4940.1 vs. uniprot
Match: A0A7S1FMT5_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMT5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.490e-6
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1

Query:  643 DANASVKASDSYKANLLKAKAASEGGAESSGIVETHTDGVTALMVAAVGGHMDVMHALVGAGADVKAEDEQGFTALLNAVK 885
            D N SV+A+  Y   +  AKA ++G  E    VE H DGVTA+ VAA+GGH+  + +L+ AGADVKA+D++    L+NAVK
Sbjct:  560 DVNTSVEATPEYIDGV--AKAIADGKEE----VEPHVDGVTAIHVAAMGGHLKCVKSLIEAGADVKAKDDEDKGPLMNAVK 634

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BLAST of mRNA_H-paniculata_contig19512.4940.1 vs. uniprot
Match: A0A7R9U5G3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5G3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.510e-6
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1

Query:  721 AESSGIVETHTDGVTALMVAAVGGHMDVMHALVGAGADVKAEDEQGFTALLNAVK 885
            A+ S  VE H DGVTALMVAA+GGH +V+  L+ A ADV A DE+ +T LLNAVK
Sbjct:  538 ADGSEDVEPHKDGVTALMVAALGGHTEVVKMLLEAEADVTAADEENWTPLLNAVK 592

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BLAST of mRNA_H-paniculata_contig19512.4940.1 vs. uniprot
Match: A0A8J9T9S8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T9S8_PHATR)

HSP 1 Score: 54.7 bits (130), Expect = 4.910e-6
Identity = 38/81 (46.91%), Postives = 47/81 (58.02%), Query Frame = 1

Query:  643 DANASVKASDSYKANLLKAKAASEGGAESSGIVETHTDGVTALMVAAVGGHMDVMHALVGAGADVKAEDEQGFTALLNAVK 885
            D NA  KA   Y   L K     EG A+     E H DGVTAL VAA GGH+  + ALV AGA++  +DE+  T+LL A+K
Sbjct:    6 DINAIAKAEPDYLVKLKKM--IEEGTAQED---EPHVDGVTALHVAAQGGHLATVEALVEAGANIGIQDEENRTSLLMAIK 81

[Close]

BLAST of mRNA_H-paniculata_contig19512.4940.1 vs. uniprot
Match: A0A6H5KMP7_9PHAE (Ricin B-type lectin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMP7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.500e-5
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1

Query:  697 AKAASEGGAESSGIVETHTDGVTALMVAAVGGHMDVMHALVGAGADVKAEDEQGFTALLNA 879
            A+  ++GG E +G  + H D VTALMVAA GGH  V+  LV  GADV+A+DE+GFT LLNA
Sbjct:  542 AQTIADGGEEPTGD-DAHRDDVTALMVAAQGGHEAVVKLLVEKGADVRAKDEEGFTPLLNA 601

[Close]

BLAST of mRNA_H-paniculata_contig19512.4940.1 vs. uniprot
Match: A0A7S3XXQ1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXQ1_HETAK)

HSP 1 Score: 52.8 bits (125), Expect = 6.810e-5
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 1

Query:  643 DANASVKASDSYKANLLKAKAASEGGAESSGIVETHTDGVTALMVAAVGGHMDVMHALVGAGADVKAEDEQGFTALLNAVK 885
            D NA+  A+  Y   + +A AA  G  +    VE HT+GVT+LMVAA GGH +V+  L+  GAD    DE G TAL NA+K
Sbjct:   24 DVNAAAIATPEYLNQINEAIAA--GNTD----VEPHTNGVTSLMVAAFGGHSEVVKLLLEHGADPTMVDENGGTALENALK 98

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig19512.4940.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig19512.4940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6


Match Name	E-value	Identity	Description
A0A6H5KZC7_9PHAE	8.710e-19	68.25	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S1FMT5_9STRA	1.490e-6	48.15	Hypothetical protein n=2 Tax=Corethron hystrix Tax...	[more]
A0A7R9U5G3_9STRA	3.510e-6	61.82	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A8J9T9S8_PHATR	4.910e-6	46.91	Hypothetical protein (Fragment) n=2 Tax=Phaeodacty...	[more]
A0A6H5KMP7_9PHAE	1.500e-5	57.38	Ricin B-type lectin domain-containing protein n=2 ...	[more]
A0A7S3XXQ1_HETAK	6.810e-5	46.91	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig19512	contig	H-paniculata_contig19512:690..4635 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	8
Model size	885
Cds size	873
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929482.0875115-UTR-H-paniculata_contig19512:4623..4635	1622929482.0875115-UTR-H-paniculata_contig19512:4623..4635	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig19512 4624..4635 -
1691480880.7561364-UTR-H-paniculata_contig19512:4623..4635	1691480880.7561364-UTR-H-paniculata_contig19512:4623..4635	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig19512 4624..4635 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig19512.4940.1	prot_H-paniculata_contig19512.4940.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig19512 690..4623 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig19512:690..4635-
coding sequence from alignment at H-paniculata_contig19512:690..4635-

protein sequence of mRNA_H-paniculata_contig19512.4940.1

>prot_H-paniculata_contig19512.4940.1 ID=prot_H-paniculata_contig19512.4940.1|Name=mRNA_H-paniculata_contig19512.4940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=291bp
MLVDAAAGVSEQDQDGLTALMNAAEIGAAEIVTYLLNKGADPNVMSETGF
TSLILAAAGGHLEVVKTLVEKGAEINGEHPEGVNALMYGAAGAHMAVVQY
LLDPGKGLEGAQVNQLHVHGGSALMEASTSGNVGVMKLLLKKGADVGVTD
KDGVTTLMSAASHGHAQACKLLLDAGAPLDLKASSGGTALMFASAAGYTD
VVNLLLEKGADANASVKASDSYKANLLKAKAASEGGAESSGIVETHTDGV
TALMVAAVGGHMDVMHALVGAGADVKAEDEQGFTALLNAVK

mRNA from alignment at H-paniculata_contig19512:690..4635-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig19512.4940.1 ID=mRNA_H-paniculata_contig19512.4940.1|Name=mRNA_H-paniculata_contig19512.4940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3946bp|location=Sequence derived from alignment at H-paniculata_contig19512:690..4635- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTGGTGAGGATGCTGGTGGACGCAGCCGCGGGGGTTTCTGAGCAAGA
CCAAGATGGTCTGACCGCACTTATGAATGCGGCTGAGATAGGCGCGGCCG
AAATCGTGACGTACCTTCTCAACAAAGGGTGAGAAGCGTGCCGCATTTAG
TTAATCTCTTTGCTTTGATGCTGTTGTTTGCTATCCATATTGATAATCGA
TGTAACTGATGTAATTGACCAATTGATTGTTTTTAAAATAATTTACATGA
CCTTGGCGGCGGGGTCGTAAGTACAATCACACGAGCACTGATTTGTGACG
TAATGTTTTCTGTTTAGTGTTTTGTGTCCGTGTCTATCGTCCGTCCGCCT
CGACTGGTCAAATGAGTGTCCCTTGTTGGTGGAAATGCTCTGTGTGACTT
GGTCTGCACATGACCTCATTTTGTTGACAAACCGAAACATATTGGAGACG
TGGTTCCGTTGCCGCTCTGCTCATGGCAAGCTGTTGATTGTGTGCACTGG
TGTGCTTGTGCAGGGCCGACCCCAATGTGATGTCGGAAACGGGCTTCACA
TCGCTTATCCTGGCAGCTGCCGGGGGACACCTGGAGGTGGTGAAGACGCT
AGTTGAAAAGGTAACGGACTGACTGACTGATTCATGTGTCTTCGGTTGTA
GTTAGTTACCAGCCATTACGGCCTTGGGTGGAGTACACCCTGTAGGAGGG
GATAATGCTCACAAGTCTCCGTCGAGGACAAACCCTATTTCTGCAGTGGT
GATCGGGACGCTTGTGCTGTGCTGAGCCGTGTCGTACTGTACATGTGGCT
ATATATTGTAGGGCTATGTTAGATTTTAAGTAGAGAGCATAATCAAGTTA
TTACCTTTGTGCATGGAGCTCAGTACCACTACGCGATGCTTGATGAGCTG
TGTGGAGACATGGTTTACTCGAGTTGGTAATGTGTTCGTTGTCGGCTGTG
TTTGTGAATGAAACATGTGAAAGGGTGCTGAGATTAACGGCGAACATCCG
GAAGGCGTAAATGCACTCATGTACGGGGCGGCGGGTGCACATATGGCAGT
TGTCCAGGTACGTGATTATTATTATTATTATTTTTTAACCCCCGGAAGGC
TGAGGCAAAACCTTTACCGATGCTTCCATACTTGAGTATTTCTACCGAAG
TATGTCTACATTTCCTTCAACAGAGCAAAGTTATTTATTCCTCTGCGGGG
TAGGTGCCACCCCGGTTCGGCCGAACCAAGTAGGTAGTGTGGGGGCTGCA
CCCACTAAAAGACCTCTGACTAGACTTCCAGTCATGCTCAGTTCATGAGC
TACCCTACCCGTTCGGGCGTAGGTCCATGGGTGTGATTAGTTTTTACGTT
GACGTTGACTTTCAGTGGGTGACTAAGTGACTACTTGACTCGTTTACTTT
TGTACAGATTAATAACGTCCGTAAAATGGAGAAGTCACATGTTGCATGTC
TTTTGTCAAAGATGAGGCACGAGACTTGAAATTGTTGTTTTTCGTGGAGT
CTTCCAGCAGGGAGCCAGCCCTCCCGTAGAGTGAGTATGCTGTAAATGAA
GTTGATTCATATCGATCGCACTGACTTGGGCCAAGTCTTTTTTTGTAAAA
GCACATTGCAGTCAGTATACATGTATATACCTGAAATACCCGTCCTATTC
TATGCTCTCCTATGATTGCATCTGACGCTTTCTGTGGTAAGTGAGCGTCG
ATACTACGCAAATGGATGACAGGATGGCGAGTGTCGTCGATTATTGCGGT
TTTTACTATTTCGTTCACAATTATTTTATATTCTGACGTTGATTAATTGT
CGTGATTATCTTGCATGCTTTCAGTATTTACTGGATCCTGGAAAAGGTTT
GGAGGGCGCACAGGTGAATCAGCTTCACGTCCATGGCGGATCAGCTCTTA
TGGAGGTGCGTGTGATATGTATTTCCTGTCTCATTCGAGCACACGGATCT
GATCTACTAGATCTCTGTTCTCTCCTCGTTCCATTGGTGTCTGGGTTTTG
ATCATTTGCTATAAAGGTCAGCTACAACGCTCTGCAAGAACGGATGTTCT
GACGGGTACCGTCGATTGTGTATGACGGGATGCGATTGATGCGTTGTGAG
CTTGAAAGAGGGAGGGAGCTATATCTAGACGTCTGAACGTTGGATACCGC
AGCATTAGTCGTGTGCCCCTGTCTAGCTCTGTTATAATTTATGGAGAAAT
TCCATTAACGCGCTACTGTGGGATCTCTAACAGGCAAGCACCTCTGGCAA
CGTGGGCGTGATGAAGCTCCTACTCAAGAAAGGAGCTGATGTGGGGGTAA
CAGACAAGGACGGGGTAACGACACTCATGTCTGCCGCTAGTCATGGACAC
GCACAGGTAAACAAACTCCCCCATCAGTAAGTGAGCTTCATGTAACAGAG
TACCGCTTCGACACAATAATTGTGCTTGTAGAGGTGTGTTCTAAAGTGAA
GGGCAGTATAGTGTTGGTGTAGCAGTGCTTTTTGCTTTGACAAGCGGCAG
TCCGTTGTGCTCTCCATGTATTTTTTTCATGAGATAGGCGTGCAAACTTT
TGTTGGATGCTGGAGCTCCTCTGGATCTGAAGGCATCGTCGGGGGGCACT
GCTCTAATGTTTGCTTCTGCAGCTGGGTACACCGACGTGGTTAATCTTCT
CTTGGAAAAGGGTGCCGATGCGAATGCCAGTGTGAAGGTACGATATATAT
CAGTTGAGTCTGTTTGTTTTCTTCGATATAACTGTGCGCCTCGTTAGGCG
CTTATCACGTGTTGACAATTCTCGCTAGTAATAATGGATGATGACAAATG
TTGATTTTCACTTGCCAAAACATTACTACTGGAAGGAACACTGGAATAAA
TCTTGCACAGTGTTACTCTCCGCTTTGGCTGGTCTATGGGATAATTTTGG
TGGTAATGTCGCCCTCTATACCCTTGATTCAAATGAGTTATTGACCTTCA
CTACGCTGTGCCATGCATCCCGGTCGCTGTGTTAACATCGAGTATCGGAA
GTGAGTCACTGTTACTCAAATTTGTTTTCTTTTCTTTTTGCCCATCGTGT
GTCGTGACCCCATCGATAGTAACCGAGGAAAATGGAAGATGGCATTTTTG
TCCATGACTAGCGTGGAGAGCACGTTCCTGAAGTTCCTGGGGTTCATGAA
CCCCGACCCCCTACACAACGACCAATGTAATTTTTGTCCCTTTGTTATCT
ATTTCAGGCGTCTGATTCGTACAAGGCCAACTTGTTGAAAGCTAAGGCTG
CGTCGGAGGGAGGAGCCGAGTCCTCTGGAATTGTGGAAACCCACACCGAC
GGAGTCACGGCGCTCATGGTAGCAGCCGTGGGTGGACACATGGTGAGCCA
GTCAAGTCGACGTTACCGCACGCATCGAACGATCCCTGTGCTTTTTTTCA
AGCCGAAGCTAAGTGTTGCTGAGGCGTAGCTTCATGTTGTGTTGGCACTT
GAGCTGAGGTGAGTCAGTGAGTCTTGAGATCTTCTTCGTAACAGCACTCA
CTGACTTCGGCTTCGACTTCGACTGTACTTCATCCCTACAGTAGCTCATC
TTTTGTTTCTCTTTTGATGGTCATTATCCTTGGAAACAGTCAATGTACAG
TATACGTTGATTTTGATTTCGGCAGGGCGTTGATGTAATTGGCATGCTGT
ATTAGTACACCAATGGCAATCACTGTGTGCAGCCTGTTTCGGTGACGTAT
GTTGCGCTCCATCGAGAGGGAGGCAGCTTTCGGAACTGATGGTGCGCTAG
ATGTCGATCAGAGCCTTGGTAGATGGGATTGTTGGCGCAGATTATATGTA
TTGATGTAGTTGTTGAATAGTTTGATACGACCGTTGCCCATGTTACACAA
CTTGTGCAGGACGTGATGCATGCTCTTGTGGGGGCTGGAGCAGATGTAAA
GGCAGAGGATGAACAGGGGTTCACTGCACTACTGAACGCTGTCAAG

Coding sequence (CDS) from alignment at H-paniculata_contig19512:690..4635-

>mRNA_H-paniculata_contig19512.4940.1 ID=mRNA_H-paniculata_contig19512.4940.1|Name=mRNA_H-paniculata_contig19512.4940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1746bp|location=Sequence derived from alignment at H-paniculata_contig19512:690..4635- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGTGGACGCAGCCGCGGGGGTTTCTGAGCAAGACCAAGATGGTCT
GACCGCACTTATGAATGCGGCTGAGATAGGCGCGGCCGAAATCGTGACGT
ACCTTCTCAACAAAGGATGCTGGTGGACGCAGCCGCGGGGGTTTCTGAGC
AAGACCAAGATGGTCTGACCGCACTTATGAATGCGGCTGAGATAGGCGCG
GCCGAAATCGTGACGTACCTTCTCAACAAAGGGGCCGACCCCAATGTGAT
GTCGGAAACGGGCTTCACATCGCTTATCCTGGCAGCTGCCGGGGGACACC
TGGAGGTGGTGAAGACGCTAGTTGAAAAGGGCCGACCCCAATGTGATGTC
GGAAACGGGCTTCACATCGCTTATCCTGGCAGCTGCCGGGGGACACCTGG
AGGTGGTGAAGACGCTAGTTGAAAAGGGTGCTGAGATTAACGGCGAACAT
CCGGAAGGCGTAAATGCACTCATGTACGGGGCGGCGGGTGCACATATGGC
AGTTGTCCAGGGTGCTGAGATTAACGGCGAACATCCGGAAGGCGTAAATG
CACTCATGTACGGGGCGGCGGGTGCACATATGGCAGTTGTCCAGTATTTA
CTGGATCCTGGAAAAGGTTTGGAGGGCGCACAGGTGAATCAGCTTCACGT
CCATGGCGGATCAGCTCTTATGGAGTATTTACTGGATCCTGGAAAAGGTT
TGGAGGGCGCACAGGTGAATCAGCTTCACGTCCATGGCGGATCAGCTCTT
ATGGAGGCAAGCACCTCTGGCAACGTGGGCGTGATGAAGCTCCTACTCAA
GAAAGGAGCTGATGTGGGGGTAACAGACAAGGACGGGGTAACGACACTCA
TGTCTGCCGCTAGTCATGGACACGCACAGGCAAGCACCTCTGGCAACGTG
GGCGTGATGAAGCTCCTACTCAAGAAAGGAGCTGATGTGGGGGTAACAGA
CAAGGACGGGGTAACGACACTCATGTCTGCCGCTAGTCATGGACACGCAC
AGGCGTGCAAACTTTTGTTGGATGCTGGAGCTCCTCTGGATCTGAAGGCA
TCGTCGGGGGGCACTGCTCTAATGTTTGCTTCTGCAGCTGGGTACACCGA
CGTGGTTAATCTTCTCTTGGAAAAGGGTGCCGATGCGAATGCCAGTGTGA
AGGCGTGCAAACTTTTGTTGGATGCTGGAGCTCCTCTGGATCTGAAGGCA
TCGTCGGGGGGCACTGCTCTAATGTTTGCTTCTGCAGCTGGGTACACCGA
CGTGGTTAATCTTCTCTTGGAAAAGGGTGCCGATGCGAATGCCAGTGTGA
AGGCGTCTGATTCGTACAAGGCCAACTTGTTGAAAGCTAAGGCTGCGTCG
GAGGGAGGAGCCGAGTCCTCTGGAATTGTGGAAACCCACACCGACGGAGT
CACGGCGCTCATGGTAGCAGCCGTGGGTGGACACATGGCGTCTGATTCGT
ACAAGGCCAACTTGTTGAAAGCTAAGGCTGCGTCGGAGGGAGGAGCCGAG
TCCTCTGGAATTGTGGAAACCCACACCGACGGAGTCACGGCGCTCATGGT
AGCAGCCGTGGGTGGACACATGGACGTGATGCATGCTCTTGTGGGGGCTG
GAGCAGATGTAAAGGCAGAGGATGAACAGGGGTTCACTGCACTACTGAAC
GCTGTCAAGGACGTGATGCATGCTCTTGTGGGGGCTGGAGCAGATGTAAA
GGCAGAGGATGAACAGGGGTTCACTGCACTACTGAACGCTGTCAAG