mRNA_H-paniculata_contig19507.4937.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19507.4937.1
Unique NamemRNA_H-paniculata_contig19507.4937.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19507.4937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19507contigH-paniculata_contig19507:2145..3260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929481.1233335-CDS-H-paniculata_contig19507:2144..22541622929481.1233335-CDS-H-paniculata_contig19507:2144..2254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19507 2145..2254 -
1691480880.4348426-CDS-H-paniculata_contig19507:2144..22541691480880.4348426-CDS-H-paniculata_contig19507:2144..2254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19507 2145..2254 -
1622929481.1360512-CDS-H-paniculata_contig19507:3172..32601622929481.1360512-CDS-H-paniculata_contig19507:3172..3260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19507 3173..3260 -
1691480880.444067-CDS-H-paniculata_contig19507:3172..32601691480880.444067-CDS-H-paniculata_contig19507:3172..3260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19507 3173..3260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19507.4937.1prot_H-paniculata_contig19507.4937.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19507 2145..3260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19507.4937.1

>prot_H-paniculata_contig19507.4937.1 ID=prot_H-paniculata_contig19507.4937.1|Name=mRNA_H-paniculata_contig19507.4937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
LKWLSDNGISIRTGLTVARVLQTTYSTSKGKKNGNDSAPKKFTDTTNAVW
EKSQVIKRETTRDLIT
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mRNA from alignment at H-paniculata_contig19507:2145..3260-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19507.4937.1 ID=mRNA_H-paniculata_contig19507.4937.1|Name=mRNA_H-paniculata_contig19507.4937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig19507:2145..3260- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAAATGGCTGAGCGATAACGGTATCTCCATACGTACTGGGCTGACCGT
TGCAAGAGTGCTGCAGACGACGTATAGCACTTCGAAAGGTAGGTGTGTTG
ACTGCAGGAGCAGCATGTCCATGCATGTTGCGTGGTTGACATGGTGGTCC
CCCCCGCTGCAGTACACAATAAGTGGGCGAACAGTAACGTCCTCCAGGAT
GTGCGTAGCATATAACAGCGATGGTGGTGGTGGAGATTTACGTGCCTTGG
AAATGTGTCGCACAGCTTACATGCAGAGCGGTTTCAACTGCTGCGGCATT
TTTGAAATTTAAATCGTCCTTGTCCAAAGATATGCTCGTTCACCCTGCTT
GACACGGTGGACCCGCCGCGCCGCCGCAACTAGCGCACAACAGCTACGCT
TTCCAGCATGTATCTTTTCTGTAGTAGTGTGGATTCTCGTGGCAAACGTA
CTTTCTGAAGCGATAGCGGAGACCACGTGGGTGTCGGTCGAGGTTGGGTT
AGTAATGTGAGGACACACGATTCCAATGATAAAACACGAGGTGCTCAGGT
GGATTGACGGCAGGCATGATTCTCTCGTCCGCACACCTACCGTCTGAACT
GGTACTGACAATCCCTGTGCTCCTGTCCCTGCGTGGGGATGGAGAGTAGC
GGTGCCGTAGTGTTCCATCACAGTATTTTATGATTTTTCCATTTTACATA
GGTTAGAGCAAGAAATTATGGAGATGTCATCATTATCACGCCATGGATCC
CGCTGGTTAAGTAATAACTCCACATGTTCAAGTTTTGCACCATGAGAGAT
CCTTTGTAACTCTACAACGTTACGGTGTGTTTGATACAAATGTGTAGTCG
GGAATTTGTCACTTAAACCGAGTCCAGAATTTTAGAACCATCATTCAACC
AGGCCGAAATAATTGATTACTGTGATTTGGTGCACTCAATCTCCGAGTCG
ATTTTTTCACAACCCCCATCTTCACCACCCCTATCCCTACCGTGCATAAT
AAACAGGCAAGAAGAACGGGAATGATTCCGCCCCCAAGAAGTTCACTGAC
ACCACGAATGCTGTGTGGGAAAAGAGCCAGGTTATCAAGAGGGAAACGAC
GCGGGATCTGATCACC
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Coding sequence (CDS) from alignment at H-paniculata_contig19507:2145..3260-

>mRNA_H-paniculata_contig19507.4937.1 ID=mRNA_H-paniculata_contig19507.4937.1|Name=mRNA_H-paniculata_contig19507.4937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig19507:2145..3260- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAAATGGCTGAGCGATAACGGTATCTCCATACGTACTGGGCTGACCGT
TGCAAGAGTGCTGCAGACGACGTATAGCACTTCGAAAGCTGAAATGGCTG
AGCGATAACGGTATCTCCATACGTACTGGGCTGACCGTTGCAAGAGTGCT
GCAGACGACGTATAGCACTTCGAAAGGCAAGAAGAACGGGAATGATTCCG
CCCCCAAGAAGTTCACTGACACCACGAATGCTGTGTGGGAAAAGAGCCAG
GTTATCAAGAGGGAAACGACGCGGGATCTGATCACCGCAAGAAGAACGGG
AATGATTCCGCCCCCAAGAAGTTCACTGACACCACGAATGCTGTGTGGGA
AAAGAGCCAGGTTATCAAGAGGGAAACGACGCGGGATCTGATCACC
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