mRNA_H-paniculata_contig1950.4935.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1950.4935.1
Unique NamemRNA_H-paniculata_contig1950.4935.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1950.4935.1 vs. uniprot
Match: D7G2M4_ECTSI (Eukaryotic translation initiation factor 1-SUI1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M4_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 6.450e-64
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 1 
Query:   10 MGDIQNLSSFDPFADSQEERRDQTKVHVRVQQRSGRKCITTVQGLADDLDLKRILKAFKKNFSCNGAIVSDADGGEVVQMSGDQRTNIHEFLVDQQICAASQV 318
            MGDIQNLSSFDPFADSQEERRDQTKVHVRVQQRSGRKCITTVQGLADDLDLKRILKAFKKNFSCNGAIVSD +GGE+VQMSGDQRTNIHEFLVDQQIC ASQV
Sbjct:    1 MGDIQNLSSFDPFADSQEERRDQTKVHVRVQQRSGRKCITTVQGLADDLDLKRILKAFKKNFSCNGAIVSDTEGGEIVQMSGDQRTNIHEFLVDQQICVASQV 103
[Close]
BLAST of mRNA_H-paniculata_contig1950.4935.1 vs. uniprot
Match: G4YNQ4_PHYSP (SUI1 domain-containing protein n=20 Tax=Oomycota TaxID=4762 RepID=G4YNQ4_PHYSP)

HSP 1 Score: 147 bits (372), Expect = 4.410e-44
Identity = 74/104 (71.15%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:   10 MGDIQNLSSFDPFADSQEERR-DQTKVHVRVQQRSGRKCITTVQGLADDLDLKRILKAFKKNFSCNGAIVSDADGGEVVQMSGDQRTNIHEFLVDQQICAASQV 318
            M DIQN  +FD FAD++++      KVHVRVQQR+GRKC+TTVQGLADDLD+KRILKAFKKNFSCNGAIV D + GE++Q+SGDQRTNI EFL+DQ+IC+ SQV
Sbjct:    1 MADIQNFQTFDAFADAKDDSSIGGGKVHVRVQQRNGRKCLTTVQGLADDLDVKRILKAFKKNFSCNGAIVKDDELGEIIQLSGDQRTNIREFLLDQEICSDSQV 104
[Close]
BLAST of mRNA_H-paniculata_contig1950.4935.1 vs. uniprot
Match: A0A835YZC5_9STRA (Eukaryotic translation initiation factor 1-SUI1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC5_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.830e-44
Identity = 75/104 (72.12%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:   10 MGDIQNLSSFDPFADSQ-EERRDQTKVHVRVQQRSGRKCITTVQGLADDLDLKRILKAFKKNFSCNGAIVSDADGGEVVQMSGDQRTNIHEFLVDQQICAASQV 318
            + DIQNLS FDPFA+S  +ER    KVHVRVQQRSGRKCITTV+G+A+DLDLKRILKA KKNFSCNGAIV D D GEV+Q+SGDQRTNI++FL   +IC   QV
Sbjct:    4 IADIQNLSKFDPFAESSSQERAGAGKVHVRVQQRSGRKCITTVEGMAEDLDLKRILKAMKKNFSCNGAIVKDKDEGEVIQLSGDQRTNINDFLYGMEICVPGQV 107
[Close]
BLAST of mRNA_H-paniculata_contig1950.4935.1 vs. uniprot
Match: K3WHU3_GLOUD (SUI1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHU3_GLOUD)

HSP 1 Score: 147 bits (370), Expect = 8.890e-44
Identity = 71/104 (68.27%), Postives = 90/104 (86.54%), Query Frame = 1 
Query:   10 MGDIQNLSSFDPFADSQEERR-DQTKVHVRVQQRSGRKCITTVQGLADDLDLKRILKAFKKNFSCNGAIVSDADGGEVVQMSGDQRTNIHEFLVDQQICAASQV 318
            M DIQN ++FD FAD++++      KVH+RVQQR+GRKC+TTVQGLADDLD+KRILKAFKKNFSCNGA+V D + GE++Q+SGDQRTNI EFL+DQ+IC+ SQ+
Sbjct:    1 MADIQNFTTFDAFADAKDDSGIGGGKVHIRVQQRNGRKCLTTVQGLADDLDIKRILKAFKKNFSCNGALVKDEELGEIIQLSGDQRTNIREFLIDQEICSDSQL 104
[Close]
BLAST of mRNA_H-paniculata_contig1950.4935.1 vs. uniprot
Match: F0XYX0_AURAN (SUI1 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYX0_AURAN)

HSP 1 Score: 147 bits (370), Expect = 1.010e-43
Identity = 69/100 (69.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:   19 IQNLSSFDPFADSQEERRDQTKVHVRVQQRSGRKCITTVQGLADDLDLKRILKAFKKNFSCNGAIVSDADGGEVVQMSGDQRTNIHEFLVDQQICAASQV 318
            IQNL+ FD F D+ EE  DQ+KVH+RVQQR+GRKCITTVQGLADDLD+KRI KAFKKNF CNGA+  D++ GE+VQ+SGDQRTN+  FL +Q+IC  +QV
Sbjct:    9 IQNLAGFDAFKDADEEAGDQSKVHIRVQQRNGRKCITTVQGLADDLDIKRICKAFKKNFQCNGAVTKDSELGEIVQLSGDQRTNVSSFLTEQEICKKAQV 108
[Close]
BLAST of mRNA_H-paniculata_contig1950.4935.1 vs. uniprot
Match: A0A7S2RZ37_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZ37_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.700e-43
Identity = 67/101 (66.34%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:   16 DIQNLSSFDPFADSQEERRDQTKVHVRVQQRSGRKCITTVQGLADDLDLKRILKAFKKNFSCNGAIVSDADGGEVVQMSGDQRTNIHEFLVDQQICAASQV 318
            D+ NL +FD FAD+ +E+ D +K+H+RVQQR+GRKCITTVQGLADDLD+KRI KAFKKNFSCNGA+  D + GE+VQ+SGDQRTN+  FL DQ+IC   Q+
Sbjct:   25 DVNNLQNFDAFADADDEQGDNSKIHIRVQQRNGRKCITTVQGLADDLDIKRICKAFKKNFSCNGAVTKDEEMGEIVQLSGDQRTNVKAFLTDQEICRDGQI 125
[Close]
BLAST of mRNA_H-paniculata_contig1950.4935.1 vs. uniprot
Match: A0A7S3NQ48_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQ48_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.990e-42
Identity = 68/104 (65.38%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:   10 MGDIQNLSS-FDPFADSQEERRDQTKVHVRVQQRSGRKCITTVQGLADDLDLKRILKAFKKNFSCNGAIVSDADGGEVVQMSGDQRTNIHEFLVDQQICAASQV 318
            M  ++NL S F+ F D++E   DQ+KVH+RVQQR+GRKCITTVQGLADDLD+KRI KAFKKNF CNGA+  D++ GE++Q+SGDQRTN++EFLVDQ+IC   Q+
Sbjct:    1 MTTLENLGSGFNAFDDAEESGGDQSKVHIRVQQRNGRKCITTVQGLADDLDIKRICKAFKKNFQCNGAVTKDSELGEIIQLSGDQRTNVNEFLVDQEICTKGQL 104
[Close]
BLAST of mRNA_H-paniculata_contig1950.4935.1 vs. uniprot
Match: A0A7S2Y0G0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G0_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.660e-41
Identity = 69/97 (71.13%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:   10 MGDIQNLSSFDPFADSQEERRDQTKVHVRVQQRSGRKCITTVQGLADDLDLKRILKAFKKNFSCNGAIVSDADGGEVVQMSGDQRTNIHEFLVDQQI 300
            M  IQNLSS D FAD++EE  D++KVHVRVQQR+GRKCIT ++GL DDLDLK+ILKAFKKNFSCNGAI  D + G+V+Q+SGDQRTN+ EFL DQ+I
Sbjct:    1 MAGIQNLSSIDFFADAKEETEDKSKVHVRVQQRNGRKCITLIEGLQDDLDLKKILKAFKKNFSCNGAITHDDEVGDVIQLSGDQRTNVKEFLEDQEI 97
[Close]
BLAST of mRNA_H-paniculata_contig1950.4935.1 vs. uniprot
Match: A0A2D4C354_PYTIN (Eukaryotic translation initiation factor 1b, putative n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4C354_PYTIN)

HSP 1 Score: 140 bits (354), Expect = 2.430e-41
Identity = 71/104 (68.27%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:   10 MGDIQNLSSFDPFADSQEERR-DQTKVHVRVQQRSGRKCITTVQGLADDLDLKRILKAFKKNFSCNGAIVSDADGGEVVQMSGDQRTNIHEFLVDQQICAASQV 318
            M DI    +FD FAD++++      KVHVRVQQR+GRKC+TTVQGLADDLD+KRILKAFKKNFSCNGAIV D + GE++Q+SGDQR NI +FLVDQ+IC+ SQV
Sbjct:    1 MADIPTFQTFDAFADAKDDSGLGGGKVHVRVQQRNGRKCLTTVQGLADDLDIKRILKAFKKNFSCNGAIVKDDELGEIIQLSGDQRNNIKDFLVDQEICSDSQV 104
[Close]
BLAST of mRNA_H-paniculata_contig1950.4935.1 vs. uniprot
Match: A0A7S4A8F8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8F8_9STRA)

HSP 1 Score: 141 bits (356), Expect = 9.180e-41
Identity = 66/101 (65.35%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:   16 DIQNLSSFDPFADSQEERRDQTKVHVRVQQRSGRKCITTVQGLADDLDLKRILKAFKKNFSCNGAIVSDADGGEVVQMSGDQRTNIHEFLVDQQICAASQV 318
            +IQN  +     D+ E++ DQ+KVH+RVQQR+GRKCITTVQGLADDLD+KRI KAFKKNF CNGA+  D++ GE++Q+SGDQRTN++ FLVDQ+IC  SQV
Sbjct:   71 EIQNFDAXXXXXDADEKQGDQSKVHIRVQQRNGRKCITTVQGLADDLDVKRICKAFKKNFQCNGAVTKDSEMGEIIQLSGDQRTNVNSFLVDQEICLKSQV 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1950.4935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2M4_ECTSI6.450e-6496.12Eukaryotic translation initiation factor 1-SUI1 n=... [more]
G4YNQ4_PHYSP4.410e-4471.15SUI1 domain-containing protein n=20 Tax=Oomycota T... [more]
A0A835YZC5_9STRA4.830e-4472.12Eukaryotic translation initiation factor 1-SUI1 n=... [more]
K3WHU3_GLOUD8.890e-4468.27SUI1 domain-containing protein n=1 Tax=Globisporan... [more]
F0XYX0_AURAN1.010e-4369.00SUI1 domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S2RZ37_9STRA1.700e-4366.34Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3NQ48_9STRA5.990e-4265.38Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2Y0G0_9STRA1.660e-4171.13Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2D4C354_PYTIN2.430e-4168.27Eukaryotic translation initiation factor 1b, putat... [more]
A0A7S4A8F8_9STRA9.180e-4165.35Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1950contigH-paniculata_contig1950:12026..15217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue2e-33
Seed eggNOG ortholog115417.EPrPW00000015331
Preferred nameEIF1B
KEGG koko:K03113,ko:K09228
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0001666,GO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0007549,GO:0008135,GO:0008150,GO:0008152,GO:0009048,GO:0009058,GO:0009059,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016282,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031326,GO:0031369,GO:0032268,GO:0032991,GO:0033554,GO:0034248,GO:0034622,GO:0034641,GO:0034645,GO:0036293,GO:0036294,GO:0040029,GO:0042221,GO:0043021,GO:0043024,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070482,GO:0070887,GO:0070993,GO:0071453,GO:0071456,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990145,GO:1990904,GO:2000112
EggNOG free text desc.Eukaryotic translation initiation factor 1b. Source PGD
EggNOG OGs1MH9M@121069,COG0023@1,KOG1770@2759
COG Functional cat.J
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03012
Exons3
Model size318
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1950.4935.1prot_H-paniculata_contig1950.4935.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1950 12026..15208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929480.7663243-CDS-H-paniculata_contig1950:12025..121461622929480.7663243-CDS-H-paniculata_contig1950:12025..12146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1950 12026..12146 -
1691480880.3511631-CDS-H-paniculata_contig1950:12025..121461691480880.3511631-CDS-H-paniculata_contig1950:12025..12146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1950 12026..12146 -
1622929480.777767-CDS-H-paniculata_contig1950:13156..133131622929480.777767-CDS-H-paniculata_contig1950:13156..13313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1950 13157..13313 -
1691480880.3637874-CDS-H-paniculata_contig1950:13156..133131691480880.3637874-CDS-H-paniculata_contig1950:13156..13313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1950 13157..13313 -
1622929480.792806-CDS-H-paniculata_contig1950:15177..152081622929480.792806-CDS-H-paniculata_contig1950:15177..15208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1950 15178..15208 -
1691480880.3721511-CDS-H-paniculata_contig1950:15177..152081691480880.3721511-CDS-H-paniculata_contig1950:15177..15208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1950 15178..15208 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929480.8128452-UTR-H-paniculata_contig1950:15208..152171622929480.8128452-UTR-H-paniculata_contig1950:15208..15217Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1950 15209..15217 -
1691480880.386989-UTR-H-paniculata_contig1950:15208..152171691480880.386989-UTR-H-paniculata_contig1950:15208..15217Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1950 15209..15217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1950.4935.1

>prot_H-paniculata_contig1950.4935.1 ID=prot_H-paniculata_contig1950.4935.1|Name=mRNA_H-paniculata_contig1950.4935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MGDIQNLSSFDPFADSQEERRDQTKVHVRVQQRSGRKCITTVQGLADDLD
LKRILKAFKKNFSCNGAIVSDADGGEVVQMSGDQRTNIHEFLVDQQICAA
SQV
back to top

mRNA from alignment at H-paniculata_contig1950:12026..15217-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1950.4935.1 ID=mRNA_H-paniculata_contig1950.4935.1|Name=mRNA_H-paniculata_contig1950.4935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3192bp|location=Sequence derived from alignment at H-paniculata_contig1950:12026..15217- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTCGGCCATGGGCGACATCCAGAACCTCTCATCGTTTGGTAAGTATCC
TCAGCCCATCCTGCTGTGCATCGTTTTTATTACGACAAGCTCAAATGGTC
TCTAGAGACAGACCTAGAACCAACCTGTCCAGTTCGCAGTGATACCTGCA
GTTCCGATGATCGAAGAGCCCGTCACCTCAGCTCTAATTTTGGTGGATTG
TGGTATTCAATTTGGTTGATTCCACTGCCTGGGTATTTTCTACATTTTAG
CGTCTTTCGGTGTGGTGGGCAACCAGGCAGAGACGAAAAGCCATTCCTCA
TGTGTAATTTTATTTCGATGTTCGGACGACGTGGTGCCTGAAGGGCGGCC
ATTACAGGATATTTGTAAGGCTGCAGAAACTATTGTTTACAGCAGCCAAC
AACCGGCTGACCGAAGTGATGCACAAGTTGCTGAGTTGAGCTTCCTTTGG
CCTACGCCCTCGTCTGGAGCTTCGATGAGGTGTTTCATGCGGTTTGCCTT
CTCGGGTCACCTCTTGCTACCCGGGGGGAGGAAGGACGATAAAAGCGTAG
AGATTAACCCTAACCCTAAGCTCGACTACTTGAATTTCGAGTACCGAATC
CGACAGTTTCAACCAAAGGGCAATCATTATCTACAGCACAGTACAGTGTT
GAGATGGTCAAGTAAGTCCTGAATCGCGAATCCTTGCAACTCTCAGATCA
GGCGAGTGCAGAGGTAGTACCTACAAATGTTGGAAGGTCATTTTGCTCTT
GTGAAAGAAGAAGCGACCCCTGTGACAACTTGTTGATGCCCTCCAACACT
TTCATTGTTGTCCCGCAAACAAGCCATTTGGGTGGATGCCACCTCACTCT
CTGTAACTCGGAGAACAAGAACTGACGGGAAGGGGAAGGCGTCAATGCTA
TTGAATAACCAAGTGAACCGAGAGAACCTGACAATATCTTGGATTGCATT
TATCGTATTATTAGTTTTCGAGCTTTTCCCTATTCCCGCAGTTGCCGTCA
CTGTTGTGGAAACAGAATACACCGGAAAAGAGGTGGAGCTGTGAGAACAA
AACCTTGTCTGCAAGAACAACCTACCTTGATGTTTGCCATAGTGCAGAGT
TGGTGCCATTGCTTTCTCGTACCTATGGTGAGGTTGTCCAGCCGGCTAAA
ACCTCAGCTGTGTATACTCCCCAGCAAAAGTAGACCAAATTGAGCTTATG
GGGAAACAAAGCCACCTCACCGTTTTTTGTTGATGGATGATCTCGATACT
GATGGAATGGTGTGAATAAGTTGAGCGCTGCAGAAAAACTCCATCTGTCC
ATGCTGAACATTTTTTTTTGTACGCTGTATCGTAAAGCCAATGCATATTT
TGAGATTGACCGCGCAAGAGATTGTGAACAAAATCGATTGACTTGTTACT
GGTTTCCCATCGCGCTGGGTGTATGTAGCTGCAGTTCTGCAGAGTCGTTT
CAAGGTGCGAGGAAATTGAACATCAATTCCCCCTCCTGAAGTATTCGAGT
TGATGAGGTGTTACTGGCCTCTCCTCGTCAACTCTCACCGTCATCTGTAG
CCGCACGTCGTATCAGCCTAGACACTTGTTTAACCCTAAATATCACTACT
TTACGTCCCCTGTACGTGTTTTCTGTCTAGCGTTCACAGAGGCTCGTCCG
AAATCGATAAGGCCTCATCGCGCCCCTCATTGTGCGATATATGCTATTCC
ATTCCCCGCCTGTCAAAGACGCCTCCTTTCTTCTACTGTTTTTTTTCATG
TTTCATGCGGAATTCAACATAGGAGAATTATGCAAACGTGACTCTGGGAA
ACGGCGGCCGTCATTGCCGTCATCATAGGAACATTTGAATTTTTGAGTAG
TATGCCCAAAAAGTGATCTCGGCGTTCATCCCCATAATGCCTCTCTTCTA
TCAGACCCCTTCGCCGACTCTCAGGAAGAGCGCCGCGACCAGACCAAGGT
CCATGTTCGAGTGCAGCAACGCAGTGGGCGCAAGTGTATCACCACGGTGC
AAGGGCTAGCCGACGACCTCGACCTGAAGCGCATTCTCAAAGCGTTCAAG
AAGAACTTCAGGTTTGTTTCTGTTTTTTTTTTTTTTTTCAATCTGTTGTT
TACTACGATGTTTGTCATGTAAAATTTTCAACCACCCCCGCTCAAATAGA
AACCATGTGATAGAGGCCTGCGTCGCGCATTCCTAGTGGGGGATACCGAA
CAAGAAATAAATGACATTCACTTTGCATTCTCCCACTTTCCATAGTCTTG
TGTTCATCATGTTTGCTCGCCCCCTGAAGTTGCGATGAAGTGCTCGCGGA
AGCTTTCTGGCTGCATCTTCACCACGACTGCAGCCTACCGATTCCATCTC
CCTGGACCTCGTACTGTTCGGGTAGAAATTACTTTTAACTCTTCGTATTT
AAATCGATACTGATCTTGTGCGTGACAACCACTGTTTTGTTGTTTTAGAC
AAAACCAGTGTACGAAATGTATTGCCTTGTAGTGTTGGTACTTGAGTTAA
GGAAGAAGACCGTGGGGAAGCTTTTTGAAATATCCAACTATCACCAAGTG
ATCGGTCAAGCTCCCTGGGTCAATTTCGCATAAATCTTTCGCAGAACAAA
GCGCATGATATTGGGCACACGATTATCTCTTCGCAGATCTTATTTGCTCC
CATAGAGTGACCACAGCAATCTTTCGCAACGTCGTGACGCCGGTTTGCCA
GGTAGATGGTAACTACCACTTTGTACACAGCTTTTCCGCTTTTTACCTTT
GTCTGTCTCACTTGGTTATTTTACACCAAGTTGAGCAGCGCTTTGCTCCC
TGGGTTATGTGACTTATTCTGCTCACGTATGAGGTAAGATCCCGGATCCA
GGTAAACATGCCCCCCCCCCCCCCTCCGAGATACTCGCGGTTATCCTACG
TCGTCATGTCGGCTTCTATCGGCCCATTTAAAACAAGAAATGACGGTGTG
CAAAGATGGTGCTCCGTGAATTGCGTCGATTGTTTTGCCCTCTTTCGAAG
TTGATTGGACGACGATTAATGCACCTGAAATATTAGCTGCCACACGATCT
CCTCCTCTTGCGCTGTGCCAGTTGCAACGGTGCAATCGTGAGTGATGCAG
ATGGAGGGGAGGTTGTGCAGATGTCAGGAGACCAGCGGACGAACATCCAC
GAATTTCTCGTCGACCAACAGATTTGCGCCGCAAGCCAGGTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1950:12026..15217-

>mRNA_H-paniculata_contig1950.4935.1 ID=mRNA_H-paniculata_contig1950.4935.1|Name=mRNA_H-paniculata_contig1950.4935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig1950:12026..15217- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGACATCCAGAACCTCTCATCGTTTGATGGGCGACATCCAGAACC
TCTCATCGTTTGACCCCTTCGCCGACTCTCAGGAAGAGCGCCGCGACCAG
ACCAAGGTCCATGTTCGAGTGCAGCAACGCAGTGGGCGCAAGTGTATCAC
CACGGTGCAAGGGCTAGCCGACGACCTCGACCTGAAGCGCATTCTCAAAG
CGTTCAAGAAGAACTTCAGACCCCTTCGCCGACTCTCAGGAAGAGCGCCG
CGACCAGACCAAGGTCCATGTTCGAGTGCAGCAACGCAGTGGGCGCAAGT
GTATCACCACGGTGCAAGGGCTAGCCGACGACCTCGACCTGAAGCGCATT
CTCAAAGCGTTCAAGAAGAACTTCAGTTGCAACGGTGCAATCGTGAGTGA
TGCAGATGGAGGGGAGGTTGTGCAGATGTCAGGAGACCAGCGGACGAACA
TCCACGAATTTCTCGTCGACCAACAGATTTGCGCCGCAAGCCAGGTATTG
CAACGGTGCAATCGTGAGTGATGCAGATGGAGGGGAGGTTGTGCAGATGT
CAGGAGACCAGCGGACGAACATCCACGAATTTCTCGTCGACCAACAGATT
TGCGCCGCAAGCCAGGTA
back to top