mRNA_H-paniculata_contig195.4933.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig195.4933.1
Unique NamemRNA_H-paniculata_contig195.4933.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig195.4933.1 vs. uniprot
Match: A0A6H5JVN5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN5_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 4.190e-86
Identity = 182/456 (39.91%), Postives = 254/456 (55.70%), Query Frame = 1
Query:    1 FDPSQQNHYAVEDEPLLTTERRPVYRTVVDAVTKSEGHPFMVDAPVGAGKTSVEE*SPQS*EALAKLS*SLPLQV*LLYNCQEVVLRVQCSYYLSTSRFSPVLYVTYGLKQNVL--TF*DVALSSYGTSF------------P*RMKFAFEASDNTLQDLLQNSNPFGGKTVIFSGDWRQIAPVVNVGSAADT-VDAAVISSSL*TEVIRMRLTISQRGRLDKPYSSFVVC--------------SALIPLSNEHDSSQSDQFSLQNTQDIEDLISFVYPNLSCDHRVFHDKVILAAANAMINVINDTILRKIPGVEVKFTSADSMIQDEDT-RNALSFTSPEHIHNIEIPSIPTHDLRLKSGVLSTIIRNLNLSGDLVNVQKGIVRGVSQNSRVLQLELLTPNRPIVLVPRVIFRSQIGRKSVSFQRVQFPLRFTYSLTIITSQGQTLSRIGLDL 1278
            FDPS Q  YA   EP LT+ +R VY  VVDAV  ++  PFM+DAP G GK+  E+         A+L       V ++ +     L++   +   +    P       L + ++   F D+   S                 P   +   E  + TL+D+ ++   +GG T+ FSGDWRQ  PV    + A+T V+A+ ISS L  +  RMRLT+SQR   D  Y+SFV                +  +PLSN HD+S +D FSLQ T D  DLI+FVYP++  D R  +D+ ILA  N  I+  ND I  +  G  V F S+D +I+D +   ++ +F S EH++NI+ P +P H L++KS  L+ +IRNL  S  LVN QK ++RGVS NSRV+++EL + +  IVL+ R  F +Q+GR  ++F RVQFPLR  YSLTI  SQGQTLSRIGLDL
Sbjct:    5 FDPSAQTAYADRFEPGLTSGQRVVYNAVVDAVRNNQPQPFMIDAPAGTGKSHTEK------VIAARLREGFTA-VLIVASTGIAALQLPGGWTAHSMFKLP-------LNEKLVDGAFCDIKSESQRAELIRKRTFIIFDELPMTHRCCIETLERTLRDIRRSEALYGGITICFSGDWRQCGPVAPFATPAETTVEASFISSDLWPKTKRMRLTMSQRDEEDPAYASFVRSIGEKIHPTTTFSDGAKRVPLSNTHDTSTTDHFSLQYTTDFNDLINFVYPDIHEDARHLNDRAILATTNISIDSCNDAISSRRHGDNVTFHSSDRLIKDHNNPASSTAFRSTEHLNNIDTPGVPPHQLQIKSDALAMLIRNLIFSEGLVNGQKVVIRGVSPNSRVVRVEL-SSDHSIVLILRTSFHAQVGRNGITFNRVQFPLRIAYSLTINNSQGQTLSRIGLDL 445          
BLAST of mRNA_H-paniculata_contig195.4933.1 vs. uniprot
Match: A0A6H5J9C5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C5_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 6.220e-83
Identity = 152/317 (47.95%), Postives = 201/317 (63.41%), Query Frame = 1
Query:  397 KFAFEASDNTLQDLLQNSNPFGGKTVIFSGDWRQIAPVVNVGSAADTVDAAVISSSL*TEVIRMRLTISQRGRLDKPYSSFVVC--------------SALIPLSNEHDSSQSDQFSLQNTQDIEDLISFVYPNLSCDHRVFHDKVILAAANAMINVINDTILRKIPGVEVKFTSADSMIQDEDTRNALSFTSPEHIHNIEIPSIPTHDLRLKSGVLSTIIRNLNLSGDLVNVQKGIVRGVSQNSRVLQLELLTPNRP--IVLVPRVIFRSQIGRKSVSFQRVQFPLRFTYSLTIITSQGQTLSRIGLDLRSFVFSH 1299
            ++  EA D TL+DL+    PFGGKT++FSGDWRQ  P+V   +  DTVDAA ISS L   V+R RL  SQR + D  Y+SFV                S L PL+N  +   ++ F L+ T D ++L+ FVYP+LS   R+++ + ILA  N  I+  NDTI    PG  V F S+DS+I DE  R   +F SPEH++ + +  IP H+L+LK+  L+ I RNLN S  LVN QK +V  VS +SRVLQ++LLT  RP  IVL+PR+ F+ ++GR  + F R QFPLR  YS+TI  SQGQTLS+IGLDLRS  F+H
Sbjct:   93 RYCVEALDRTLKDLMAVDQPFGGKTILFSGDWRQTGPIVKNAAPTDTVDAAFISSPLWKGVMRFRLNKSQRDKEDPQYASFVRSIGEGSRPTVTMSDGSKLTPLNNHDNEDTANHFQLRYTTDFDELLRFVYPDLSQQSRIWNTRAILATTNHSIDRSNDTISDNRPGNYVSFFSSDSLISDEKNRRT-AFASPEHLNQLNVQGIPPHELKLKTDTLALITRNLNFSEGLVNGQKCVVLAVSASSRVLQVQLLTEERPRPIVLIPRINFQGKVGRNGICFTRKQFPLRTAYSMTINKSQGQTLSKIGLDLRSSPFAH 408          
BLAST of mRNA_H-paniculata_contig195.4933.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 1.190e-65
Identity = 171/487 (35.11%), Postives = 243/487 (49.90%), Query Frame = 1
Query:    1 FDPSQQNHYAVEDEPLLTTERRPVYRTVVDAVTKSEGHPFMVDAPVGAGKTSVEE*SPQS*EALAKL----------------------S*SLPLQV*LLYNCQEVVLRVQCSYYLSTSRFSPVLYVTYGLKQNVLTF*DVALSSYGTSFP*RMKFAFEASDNTLQDLLQNSNPFGGKTVIFSGDWRQIAPVVNVGSAADTVDAAVISSSL*TEVIRMRLTISQRGRLDKPYS----------SFVVCSAL----------------IPLSNE-----HDSSQSDQFSLQNTQDIEDLISFVYPN-LSCDHRVFHDKVILAAANAMINVINDTILRKIPGVEVKFTSADSMIQDEDTRNALSFTSPEHIHNIEIPSIPTHDLRLKSGVLSTIIRNLNLSGDLVNVQKGIVRGVSQNSRVLQLELLTPNRPIVLVPRVIFRSQIGRKSVSFQRVQFPLRFTYSLTIITSQGQTLSRIGLDLRSFVFSH 1299
            FDP+Q + +  E    LT E+R VY TVV +VT    + FM+DAP G GKT  E        +++KL                         LPL+        + V    C+    + R   +       K +++ + ++ +S          +F+ EA + TLQDL+ N N  GGKTV+ SGD RQI P +  G  A T+DA++ISS L   V RMRLTISQR R +  Y              VC                   +PL+          S  DQF + NT   E+LI FVY + L+ D   F  + IL++ NA I++IN  +L  +PG  +   S D++   +   N L F +   ++ I++  +P H L LK   +  I RNLN    LVN QK IVRG S  +R++ +ELL     +VL+PR+   +++GR  ++F R+Q PLR  Y+LTI  SQGQTLS+IGLDLRS VF+H
Sbjct:  276 FDPAQMSAFVDEHLANLTHEQRHVYDTVVSSVTSGASNLFMIDAPAGTGKTYTESILCARLRSMSKLVLCVASTGIAGLQLPGGWTAHSMFKLPLE-------DKNVSGAMCNISAESQRAEVLR------KCDLIVWDEIPMSH---------RFSVEALNLTLQDLMGNDNIMGGKTVLLSGDLRQIGPFIKHGGPAGTIDASLISSPLWPHVQRMRLTISQRHRKNAAYVRCFCSKCRYVGMSVCXXXGIGTQAHTTANDGIDAVPLAYRLFMKFRTDSPKDQFVIDNTDSFEELIDFVYQDILTADPTDFKARAILSSTNATIDLINSHVLDILPGDMLTAYSCDTVDPHD---NNLDFVATADLNAIDVSGVPPHALELKLNCMVMITRNLNFKQGLVNGQKAIVRGYS--TRIVHVELLDGLSSLVLIPRIRLNAKVGRNGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTH 735          
BLAST of mRNA_H-paniculata_contig195.4933.1 vs. uniprot
Match: A0A6H5L0V2_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V2_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 3.240e-62
Identity = 126/303 (41.58%), Postives = 170/303 (56.11%), Query Frame = 1
Query:  397 KFAFEASDNTLQDLLQNSNPFGGKTVIFSGDWRQIAPVVNVGSAADTVDAAVISSSL*TEVIRMRLTISQRGRLDKPYSSFVVCSALIPLSNEHDSSQSDQFSLQNTQDIEDLISFVYPNLSCDHRVFHDKVILAAANAMINVINDTILRKIPGVEVKFTSADSMIQDEDTRNALSFTSPEHIHNIEIPSIPTHDLRLKSGVLSTIIRNLNLSGDLVNVQKGIVRGVSQNSRVLQLELLTPN--RPIVLVPRVIFRSQIGRKSVSFQRVQFPLRFTYSLTIITSQGQTLSRIGLDLRSFVFSH 1299
            ++  EA D TL+DL++N   FGGKT++FSGDWRQ  P+V  GS  DTVDAAVISS     + R+RLT SQR + D  Y+SFV                                                           NV  D           K  ++DS+I+DE +  + +F +PEH++ + +  IP H+L+LKS  L+ ++RNLN +  LVN QK I++GVS NSRV+Q+ELLT +   PIVL+PR+ F +Q+GR  +SF RVQFPLR  Y++TI  SQGQTL +IGLDLRS  F+H
Sbjct:   39 RYCVEALDRTLKDLMRNDRLFGGKTILFSGDWRQTGPIVKHGSPTDTVDAAVISSHRWKHISRLRLTKSQRDKDDPAYASFVR----------------------------------------------------------NVGED-----------KLPTSDSLIKDESS-TSTAFAAPEHLNQLHVSGIPPHELQLKSNGLAMLVRNLNFAEGLVNGQKCILKGVSPNSRVIQVELLTDDLPHPIVLIPRINFTAQVGRNGISFMRVQFPLRSAYAMTINKSQGQTLKKIGLDLRSSPFAH 271          
BLAST of mRNA_H-paniculata_contig195.4933.1 vs. uniprot
Match: A0A6H5L0I5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I5_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 2.820e-54
Identity = 152/451 (33.70%), Postives = 217/451 (48.12%), Query Frame = 1
Query:    1 FDPSQQNHYAVEDEPLLTTERRPVYRTVVDAVTKSEGHPFMVDAPVGAGKTSVEE*SPQS*EALAKL----------------------S*SLPLQV*LLYNCQEVVLRVQCSYYLSTSRFSPVLYVTYGLKQNVLTF*DVALSSYGTSFP*RMKFAFEASDNTLQ-DLLQNSNPFGGKTVIFSGDWRQIAPVVNVGSAADTVDAAVISSSL*TEVIRMRLTISQRGRLDKPYSSFVVCSALIPLSNEHDSSQSDQFSLQNTQDIEDLISFVYPNLSCDHRVFHDKVILAAANAMINVINDTILRKIPGVEVKFTSADSMIQDEDTRNALSFTSPEHIHNIEIPSIPTHDLRLKSGVLSTIIRNLNLSGDLVNVQKGIVRGVSQNSRVLQLELLTPNRPIVLVPRVIFRSQIGRKSVSFQRVQFPLRFTYSLTIITSQGQTLSRIGLDLRS 1284
            FDP+Q + +  E    LT E+R VY TVV +VT    + FM+DAP G GKT  E        +++KL                         LPL+       ++ V    C+    + R   +       K +++ + ++ +S          +F+ EA + TLQ DLL N N  GGKTV+ SGD RQI PVV  G  A+T+DA++ISS L   V RMRLTISQR R D  Y+S                                                    IL++ NA I++IN  +L  +PG  +   S D++   +   N L F +   ++ I++  +P H L LK   +  I RNLN    LVN QK IVRG S  +R++ +ELL     +VL+PR+   +++GR  ++F R+Q PLR  Y+LTI  SQGQT+ +IGLDLRS
Sbjct:  439 FDPAQMSAFVDEHLANLTHEQRHVYDTVVSSVTSGASNLFMIDAPAGTGKTYTESILCARLRSMSKLVLCVASTGIAGLQLPGGWTAHSMFKLPLE-------EKNVSGAMCNISAESQRAEVLR------KCDLIVWDEIPMSH---------RFSVEALNLTLQADLLGNDNIMGGKTVLLSGDLRQIGPVVKHGGPAETIDASLISSPLWPHVQRMRLTISQRDREDAAYAS---------------------------------------------------AILSSTNATIDLINSHVLDILPGDMLTAYSCDTVDPHD---NNLDFVATADLNAIDVSGVPPHALELKLNCMVMITRNLNFKQGLVNGQKAIVRGYS--TRIVHVELLDGLSSLVLIPRIRLNAKVGRNGIAFSRLQLPLRVCYALTINKSQGQTVPKIGLDLRS 811          
BLAST of mRNA_H-paniculata_contig195.4933.1 vs. uniprot
Match: A0A6H5JNR7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR7_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 1.950e-52
Identity = 124/304 (40.79%), Postives = 167/304 (54.93%), Query Frame = 1
Query:  397 KFAFEASDNTLQDLLQNSNPFGGKTVIFSGDWRQIAPVVNVGSAADTVDAAVISSSL*TEVIRMRLTISQRGRLDKPYSSFVVCSALIPLSNEHD--SSQSDQFSLQNTQDIEDLISFVYPN-LSCDHRVFHDKVILAAANAMINVINDTILRKIPGVEVKFTSADSMIQDEDTRNALSFTSPEHIHNIEIPSIPTHDLRLKSGVLSTIIRNLNLSGDLVNVQKGIVRGVSQNSRVLQLELLTPNRPIVLVPRVIFRSQIGRKSVSFQRVQFPLRFTYSLTIITSQGQTLSRIGLDLRSFVFSH 1299
            +F+ EA + TLQDL+ N N  GGKTV+ SGD RQI PVV  G  A+T+DA++ISS L   V RMRLTISQR +        +     +PL+  H+   S  DQF + NT   E+LI FVY + L+ D   F  + I                                +   D  N L F +   ++ I++  +P H L LK   +  I RNLN    LVN QK IVRG S  +R++ +ELL     +VL+PR+   +++GR  ++F R+Q PLR  Y+LTI  SQGQTLS+IGLDLRS VF+H
Sbjct:   93 RFSVEALNLTLQDLMGNDNIMGGKTVLLSGDLRQIGPVVKHGGPAETIDASLISSPLWPHVQRMRLTISQRTQAHTTTDDGIDA---VPLAYIHEVPDSPKDQFFIDNTDSFEELIDFVYQDILTADPTDFKARAIC-------------------------------LDPHD--NNLDFVATADLNAIDVSGVPPHALELKLNCMVMITRNLNFKQGLVNGQKAIVRGYS--TRIVHVELLDGLSSLVLIPRIRLNAKVGRNGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTH 358          
BLAST of mRNA_H-paniculata_contig195.4933.1 vs. uniprot
Match: A0A6H5KXS1_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS1_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 8.250e-45
Identity = 105/254 (41.34%), Postives = 148/254 (58.27%), Query Frame = 1
Query:  586 MRLTISQRGRLDKPYSSFVVCSAL-------------IPLS--NEHDSSQSDQFSLQNTQDIEDLISFVYPN-LSCDHRVFHDKVILAAANAMINVINDTILRKIPGVEVKFTSADSMIQDEDTRNALSFTSPEHIHNIEIPSIPTHDLRLKSGVLSTIIRNLNLSGDLVNVQKGIVRGVSQNSRVLQLELLTPNRPIVLVPRVIFRSQIGRKSVSFQRVQFPLRFTYSLTIITSQGQTLSRIGLDLRSFVFSH 1299
            MRLTISQR R D  Y++FV    +             +PL+  NE   S  DQF + NT   E+LI FVY + L+ D   F  + IL++ NA I++IN  +L  +PG  +   S D++   +   N L F +   ++ I++  +P H L LK   +  I RNLN    LVN QK IVRG S  +R++ +ELL     +VL+PR+   +++GR  ++F R+Q PLR  Y+LTI  SQGQTLS+IGLDLRS VF+H
Sbjct:    1 MRLTISQRDRKDAAYAAFVRNIGIGTQAHTTDDGIDAVPLAYINEVPDSPKDQFVIDNTDSFEELIDFVYQDILTADPTDFKARAILSSTNATIDLINSHVLDILPGDMLTAYSCDTVDPHD---NNLDFVATADLNAIDVSGVPPHALELKLNCMVMITRNLNFKQGLVNGQKAIVRGYS--TRIVHVELLDGLSSLVLIPRIRLNAKVGRNGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTH 249          
BLAST of mRNA_H-paniculata_contig195.4933.1 vs. uniprot
Match: UPI001ED8867E (uncharacterized protein LOC124173554 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8867E)

HSP 1 Score: 172 bits (435), Expect = 6.740e-43
Identity = 138/432 (31.94%), Postives = 209/432 (48.38%), Query Frame = 1
Query:   28 AVEDEPLLTTERRPVYRTVVDAVT-KSEGHPFMVDAPVGAGKTSVEE*SP---QS*EALAKLS*SLPLQV*LLYNCQEVVLRVQCSYYLSTSRFSPVLYVTYGLKQNVLTF*DVALSSYGTSFP*RMKFAFEASDNTLQDLLQNSNPFGGKTVIFSGDWRQIAPVVNVGSAADTVDAAVISSSL*TEVIRMRLTISQRGRLDKPYSSFV--VCSALIPLSNEHDSSQSDQFSLQNTQDIEDLISFVYP-NLSCDHRVFHDKVILAAANAMINVINDTILRKIPGVEVKFTSADSMIQDEDTRNALSFTSPEHIHNIEIPSIPTHDLRLKSGVLSTIIRNLNLSGDLVNVQKGIVRGVSQNSRVLQLELLTPNRP-IVLVPRVIFRSQIGRKSVSFQRVQFPLRFTYSLTIITSQGQTLSRIGLDLRSFVFSH 1299
            A+E  P LT E+  V   +++AVT + E   F +D P G GKT V        +S  A+   + S  +    L +   +         L T+       VT G  Q        +L  +  + P   K   E  D  L+D+ QN   FGGK ++ +GD+RQI P++  G+  D ++A++ SS L   +I+ RL    R R D+ Y+ FV  V    +P  +           + N   +EDL++FVYP ++  +      + IL+  N  I  IN  +LR +P   V+  SADS        N    T  + ++N+    +P H L LK G +  +IRN++ +  LVN  K  V  +S+      +E   P RP  VL+PR+ F+ Q+    +   R QFPL+  Y +TI  +QGQTL ++GLDLRS VFSH
Sbjct: 1076 ALEWRPKLTEEQLSVSDAIINAVTGEDENKVFFIDGPSGTGKTVVLNYITARLRSEGAVVLCTASTGIAA--LNHLGGITAHSMFQLPLETNDPHATCGVTGG-SQRAELIRRASLIIWDEA-PMAHKVTVEILDRCLRDICQNRQAFGGKVMVLAGDFRQIPPIIPDGAKVDIIEASLKSSQLWPNIIKKRLRTILRSREDQDYTDFVLEVGENKVPSISIGIYRPIPLRMIINATSLEDLMNFVYPRDVLFNPEQCVRRAILSGTNLNIAEINAAVLRMLPNEAVRLCSADSTPCAGPEDNVHIHT--DVLNNVSHTGVPDHILELKVGCMVILIRNISFTDGLVNGTKLFVEKISRRF----VEARVPGRPDTVLIPRICFKFQVSNSGIEMIRRQFPLKVAYGMTINKAQGQTLDKVGLDLRSDVFSH 1497          
BLAST of mRNA_H-paniculata_contig195.4933.1 vs. uniprot
Match: UPI000BBE1442 (uncharacterized protein LOC106362971 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE1442)

HSP 1 Score: 170 bits (430), Expect = 2.920e-42
Identity = 140/470 (29.79%), Postives = 228/470 (48.51%), Query Frame = 1
Query:    1 FDPSQQNHYAVEDEPLLTTERRPVYRTVVDAVTKSEGHPFMVDAPVGAGKT------------SVEE*SPQS*EALAKLS*SLPLQV*LLYNCQEVVLRVQCSYYLSTSRFSPVLYVTYGLKQNVLTF*DVALSSYGTSFP*RMKFAFEASDNTLQDLLQNSN------PFGGKTVIFSGDWRQIAPVVNVGSAADTVDAAVISSSL*TEVIRMRLTISQRGRLD-KPYSSFVV-----CSALIPLSNEHDSSQSDQFSLQNT-------QDIEDLISFVYPNLSCDHR---VFHDKVILAAANAMINVINDTILRKIPGVEVKFTSADSMIQDEDTRNALSFTSP-EHIHNIEIPSIPTHDLRLKSGVLSTIIRNLNLSGDLVNVQKGIVRGVSQNSRVLQLELLT--PNRPIVLVPRVIFRSQIGRKSVSFQRVQFPLRFTYSLTIITSQGQTLSRIGLDLRSFVFSH 1299
            FD +++     +  P L  E+R +Y  V+ +V +++G  F +    G GKT            S ++  P +  A+A L         LL   +    R +    L    F  V   T     N+ +F   A        P   + A EA D TL+D+L  S+      PFGGKTV+  GD+RQI PV+  G+  +TV+AAV  S L        L+ + R + D K ++ +++      +AL P    +  +  DQ  + ++         ++ L   V+P+ + D++      D  IL   NA ++ IN  +L KIPG E +F S DS  +DE        T P E++++++   +P H + LK GV   ++RN+N +  L N  + IV  + +  RV++ E+LT  P +  VL+PR++          +F+R QFP+R +Y++TI  SQGQTL+++ L L   VF+H
Sbjct:  836 FDIAEETRIHQDLFPKLNEEQRAIYDDVMGSVLENQGKLFFIYGAGGTGKTFLYRTIISALRSSKKKVIPVASSAIAAL---------LLPGGRTAHSRFKIPLKLYEDTFCEVKNGT-----NLASFLSQADLIIWDEVPMAHRHAIEAVDRTLRDILSLSDRTALNRPFGGKTVLLGGDFRQILPVIPQGTRQETVNAAVNHSHLWNHCEIHVLSTNMRVQSDEKDFAKWILQVGDGVAALAPQKEIYTEAAEDQILIDDSLLLPVTSNPLDILCQSVFPDFTNDYKDMEKIRDSAILTPKNATVDEINTYLLSKIPGAEQEFLSYDSFAEDEKHSGEFDLTYPLEYLNSLQFSGLPAHRICLKVGVPIMLLRNINQAEGLCNGTRLIVTHLGE--RVIKAEVLTSSPRKQTVLIPRIVLSPTESNHPFTFRRRQFPVRVSYAMTINKSQGQTLAKVALYLPKPVFTH 1289          
BLAST of mRNA_H-paniculata_contig195.4933.1 vs. uniprot
Match: UPI000BBE7F93 (uncharacterized protein LOC106354889 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE7F93)

HSP 1 Score: 159 bits (403), Expect = 4.560e-41
Identity = 108/326 (33.13%), Postives = 176/326 (53.99%), Query Frame = 1
Query:  397 KFAFEASDNTLQDLLQNSN------PFGGKTVIFSGDWRQIAPVVNVGSAADTVDAAVISSSL*TEVIRMRLTISQRGRLD-KPYSSFVV-----CSALIPLSNEHDSSQSDQFSLQNT-------QDIEDLISFVYPNLSCDHR---VFHDKVILAAANAMINVINDTILRKIPGVEVKFTSADSMIQDEDTRNALSFTSP-EHIHNIEIPSIPTHDLRLKSGVLSTIIRNLNLSGDLVNVQKGIVRGVSQNSRVLQLELLT--PNRPIVLVPRVIFRSQIGRKSVSFQRVQFPLRFTYSLTIITSQGQTLSRIGLDLRSFVFSH 1299
            + A EA D TL+D+L  S+      PFGGKTV+  GD+RQI PV+  G+  +TV+AAV  S L        L+ + R + D K ++ +++      +AL P    +  +  DQ  + ++         ++ L   V+P+ + D++      D  IL   NA ++ IN  +L KIPG E +F S DS  +DE        T P E++++++   +P H + LK GV   ++RN+N +  L N  + IV  + +  RV++ E+LT  P +  VL+PR++          + +R QFP+R +Y++TI  SQGQTL+++ L L   VF+H
Sbjct:    4 RHAIEAVDRTLRDILSLSDRTALNRPFGGKTVLLGGDFRQILPVIPQGTRQETVNAAVNHSHLWNHCEIHVLSTNMRVQSDEKDFAKWILQVGDGVAALAPQKEIYTEAAEDQILIDDSLLLPVTSNPLDILCQSVFPDFTNDYKDMEKIRDSAILTPKNATVDEINTYLLSKIPGAEQEFLSYDSFAEDEKHSGEFDLTYPLEYLNSLQFSGLPAHRICLKVGVPIMLLRNINQAEGLCNGTRLIVTHLGE--RVIKAEVLTSSPRKQTVLIPRIVLSPTESNHPFTLRRRQFPVRVSYAMTINKSQGQTLAKVALYLPKPVFTH 327          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig195.4933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVN5_9PHAE4.190e-8639.91ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5J9C5_9PHAE6.220e-8347.95ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JZJ6_9PHAE1.190e-6535.11ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5L0V2_9PHAE3.240e-6241.58ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5L0I5_9PHAE2.820e-5433.70ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JNR7_9PHAE1.950e-5240.79ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KXS1_9PHAE8.250e-4541.34ATP-dependent DNA helicase (Fragment) n=1 Tax=Ecto... [more]
UPI001ED8867E6.740e-4331.94uncharacterized protein LOC124173554 n=1 Tax=Ischn... [more]
UPI000BBE14422.920e-4229.79uncharacterized protein LOC106362971 n=1 Tax=Brass... [more]
UPI000BBE7F934.560e-4133.13uncharacterized protein LOC106354889 n=1 Tax=Brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig195contigH-paniculata_contig195:24186..25526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score114.0
Seed ortholog evalue9.6e-23
Seed eggNOG ortholog3712.Bo9g150240.1
KEGG koko:K07466,ko:K15255
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP-dependent DNA helicase
EggNOG OGs37Q72@33090,3GCCF@35493,3HWI1@3699,COG0507@1,KOG0987@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_006650.1
EC3.6.4.12
COG Functional cat.D
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03032,ko03400
Exons2
Model size1299
Cds size714
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig195.4933.1prot_H-paniculata_contig195.4933.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig195 24771..25526 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929480.361752-UTR-H-paniculata_contig195:24185..247701622929480.361752-UTR-H-paniculata_contig195:24185..24770Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig195 24186..24770 +
1691480880.163851-UTR-H-paniculata_contig195:24185..247701691480880.163851-UTR-H-paniculata_contig195:24185..24770Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig195 24186..24770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929480.3760257-CDS-H-paniculata_contig195:24770..248261622929480.3760257-CDS-H-paniculata_contig195:24770..24826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig195 24771..24826 +
1691480880.1758718-CDS-H-paniculata_contig195:24770..248261691480880.1758718-CDS-H-paniculata_contig195:24770..24826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig195 24771..24826 +
1622929480.3859217-CDS-H-paniculata_contig195:24868..255261622929480.3859217-CDS-H-paniculata_contig195:24868..25526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig195 24869..25526 +
1691480880.1836348-CDS-H-paniculata_contig195:24868..255261691480880.1836348-CDS-H-paniculata_contig195:24868..25526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig195 24869..25526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig195.4933.1

>prot_H-paniculata_contig195.4933.1 ID=prot_H-paniculata_contig195.4933.1|Name=mRNA_H-paniculata_contig195.4933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp
MRLTISQRGRLDKPYSSFVVCSALIPLSNEHDSSQSDQFSLQNTQDIEDL
ISFVYPNLSCDHRVFHDKVILAAANAMINVINDTILRKIPGVEVKFTSAD
SMIQDEDTRNALSFTSPEHIHNIEIPSIPTHDLRLKSGVLSTIIRNLNLS
GDLVNVQKGIVRGVSQNSRVLQLELLTPNRPIVLVPRVIFRSQIGRKSVS
FQRVQFPLRFTYSLTIITSQGQTLSRIGLDLRSFVFSH
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mRNA from alignment at H-paniculata_contig195:24186..25526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig195.4933.1 ID=mRNA_H-paniculata_contig195.4933.1|Name=mRNA_H-paniculata_contig195.4933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1341bp|location=Sequence derived from alignment at H-paniculata_contig195:24186..25526+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGACCCCTCCCAGCAAAACCACTACGCTGTCGAAGATGAGCCCCTTCT CACAACTGAACGGAGACCTGTATATCGCACCGTCGTCGATGCTGTTACTA AGAGCGAAGGCCACCCCTTCATGGTAGATGCCCCTGTAGGAGCCGGCAAA ACCTCTGTAGAAGAGTGATCGCCGCAAAGTTGAGAAGCGCTGGCAAAACT GTCGTAATCGTTGCCTCTACAGGTATAGCTGCTTTACAACTGCCAGGAGG TCGTACTCCGCGTTCAATGTTCATACTACCTCTCGACGAGTAGGTTCAGC CCGGTGCTGTATGTAACATACGGCCTGAAACAGAACGTGCTGACGTTTTA AGATGTTGCACTCTCATCATATGGGACAAGCTTCCCATGACGCATGAAAT TTGCGTTTGAAGCTTCAGACAACACTCTGCAGGATCTTCTCCAGAATTCG AATCCTTTCGGGGGGAAGACAGTTATATTCAGCGGCGATTGGAGACAGAT TGCGCCTGTTGTAAATGTTGGTTCTGCCGCAGATACCGTTGATGCTGCTG TCATCTCAAGCTCCTTATAGACTGAGGTAATACGTATGCGCCTGACGATA TCCCAGAGAGGCAGGCTAGATAAACCCTACTCATCTTTCGTGTGAGCTGT CGGTGAAGATCGTATTCCCCGACGATCATCCAGCGTATGCTCAGCTCTCA TACCACTCAGTAATGAACACGATTCTTCTCAATCTGACCAGTTTTCCCTC CAGAATACGCAAGACATTGAAGACCTCATATCCTTCGTGTATCCCAACCT CTCTTGCGACCACCGTGTATTTCACGACAAAGTAATTCTCGCAGCTGCAA ATGCCATGATTAATGTCATCAACGACACGATCCTCAGGAAAATACCAGGC GTAGAAGTAAAATTTACTAGTGCAGACTCCATGATCCAAGATGAAGACAC ACGCAACGCCCTTTCATTCACCTCTCCTGAGCATATTCACAACATTGAAA TCCCCAGCATCCCTACCCACGACCTGCGTCTTAAATCAGGAGTTTTGTCC ACGATCATTCGTAATTTGAACCTGTCAGGGGACTTAGTCAATGTTCAGAA AGGTATCGTCCGAGGTGTATCGCAGAACTCACGTGTTCTGCAACTCGAAC TCCTCACCCCCAACCGACCTATTGTACTTGTGCCAAGAGTCATTTTCCGA TCTCAGATTGGTCGCAAAAGTGTATCTTTTCAACGAGTTCAATTCCCTCT CCGGTTTACTTATTCTCTAACCATTATCACATCTCAGGGACAAACACTTT CACGAATAGGCCTTGACCTGCGGAGCTTCGTCTTCTCACAC
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Coding sequence (CDS) from alignment at H-paniculata_contig195:24186..25526+

>mRNA_H-paniculata_contig195.4933.1 ID=mRNA_H-paniculata_contig195.4933.1|Name=mRNA_H-paniculata_contig195.4933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig195:24186..25526+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCCTGACGATATCCCAGAGAGGCAGGCTAGATAAACCCTACTCATC
TTTCGTATGCGCCTGACGATATCCCAGAGAGGCAGGCTAGATAAACCCTA
CTCATCTTTCGTCGTATGCTCAGCTCTCATACCACTCAGTAATGAACACG
ATTCTTCTCAATCTGACCAGTTTTCCCTCCAGAATACGCAAGACATTGAA
GACCTCATATCCTTCGTGTATCCCAACCTCTCTTGCGACCACCGTGTATT
TCACGACAAAGTAATTCTCGCAGCTGCAAATGCCATGATTAATGTCATCA
ACGACACGATCCTCAGGAAAATACCAGGCGTAGAAGTAAAATTTACTAGT
GCAGACTCCATGATCCAAGATGAAGACACACGCAACGCCCTTTCATTCAC
CTCTCCTGAGCATATTCACAACATTGAAATCCCCAGCATCCCTACCCACG
ACCTGCGTCTTAAATCAGGAGTTTTGTCCACGATCATTCGTAATTTGAAC
CTGTCAGGGGACTTAGTCAATGTTCAGAAAGGTATCGTCCGAGGTGTATC
GCAGAACTCACGTGTTCTGCAACTCGAACTCCTCACCCCCAACCGACCTA
TTGTACTTGTGCCAAGAGTCATTTTCCGATCTCAGATTGGTCGCAAAAGT
GTATCTTTTCAACGAGTTCAATTCCCTCTCCGGTTTACTTATTCTCTAAC
CATTATCACATCTCAGGGACAAACACTTTCACGAATAGGCCTTGACCTGC
GGAGCTTCGTCTTCTCACACCGTATGCTCAGCTCTCATACCACTCAGTAA
TGAACACGATTCTTCTCAATCTGACCAGTTTTCCCTCCAGAATACGCAAG
ACATTGAAGACCTCATATCCTTCGTGTATCCCAACCTCTCTTGCGACCAC
CGTGTATTTCACGACAAAGTAATTCTCGCAGCTGCAAATGCCATGATTAA
TGTCATCAACGACACGATCCTCAGGAAAATACCAGGCGTAGAAGTAAAAT
TTACTAGTGCAGACTCCATGATCCAAGATGAAGACACACGCAACGCCCTT
TCATTCACCTCTCCTGAGCATATTCACAACATTGAAATCCCCAGCATCCC
TACCCACGACCTGCGTCTTAAATCAGGAGTTTTGTCCACGATCATTCGTA
ATTTGAACCTGTCAGGGGACTTAGTCAATGTTCAGAAAGGTATCGTCCGA
GGTGTATCGCAGAACTCACGTGTTCTGCAACTCGAACTCCTCACCCCCAA
CCGACCTATTGTACTTGTGCCAAGAGTCATTTTCCGATCTCAGATTGGTC
GCAAAAGTGTATCTTTTCAACGAGTTCAATTCCCTCTCCGGTTTACTTAT
TCTCTAACCATTATCACATCTCAGGGACAAACACTTTCACGAATAGGCCT
TGACCTGCGGAGCTTCGTCTTCTCACAC
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