prot_H-paniculata_contig1949.4929.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1949.4929.1
Unique Nameprot_H-paniculata_contig1949.4929.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1258
Homology
BLAST of mRNA_H-paniculata_contig1949.4929.1 vs. uniprot
Match: A0A6H5K9D0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D0_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 1.730e-79
Identity = 212/448 (47.32%), Postives = 233/448 (52.01%), Query Frame = 0
Query:   93 SDLEGALDDDDDCEEACRLDSSGWHRRDGLVPRHSGVEIFVGGLTRSTRRDMLRDWFQHAGDVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIETMHRFEFKPGRFLGVLPSDENRTLFVGGLKEEWSCEHICKLLEGQMPGLLKVEPIPDREDRGKIRTFCFLEFASHPEAALVLNRHQVETSATNGGSTERPGGNGEEGMLSVTNAVNSAGTSTAAFEREARVSSISSCPESSCEVVASFAMLPGQGIVRGDGAASATCXXXXXXXXXXXTPAPARTAAASEPASATTDHFLYDEGNPLDFEGAGDGSGIGGNSSLQDAGVVDSSRQQSLGIHNDTTGGSGETYGKERRLSAVSEQDHGRETVFSWGKDASVCPPACSTGGQRAGGGSGGGVPLVVGGTVLKVDWADPLRYHIHLNGGIKGPCAVQEVGMIESRPIRQGTHPRG 540
            SDL  AL DD           + W  R+  VP+  GVEIFVGGLTRSTRRDMLRDWFQHAG+VTEVRIARDKRRRRCRGYGYVRFATSEQAN AIETMHRFEFK GRFLGVLPSDENRTLFVGGL+EEWSC +IC+LL+ +MPGL KVEPIPDREDR KIRTFCFLEFASH EAA++ NRHQ                                                                LP               XXXXXXXXXXX   P  T   S P               L +E              +DA                            RR S  S       T  S G +A+        GG++ G  +G GVPLVVGG  LKVDWADPLRYHIHLNGGIKGP A  E G+   RP  +G   +G
Sbjct:   79 SDLRDALKDDXXXXXESLDLGTAWASRE-FVPK-PGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANLAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFNRHQTSPR------------------------------------------------------------LP-----------QPXXXXXXXXXXXXXXQGP--TTELSLPLXXXXXXXXXXXXAGLRYE--------------RDA----------------------------RRESRSST------TCTSAGDNAA------DGGGEKDG--TGAGVPLVVGGATLKVDWADPLRYHIHLNGGIKGPSAPPESGVQNGRPASRGAGCKG 395          
BLAST of mRNA_H-paniculata_contig1949.4929.1 vs. uniprot
Match: D7FYA2_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA2_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 3.280e-59
Identity = 114/154 (74.03%), Postives = 125/154 (81.17%), Query Frame = 0
Query:   87 EQPMCFSDLEGALDDDDDCEEACRLDSSG--WHRRDGLVPRHSGVEIFVGGLTRSTRRDMLRDWFQHAGDVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIETMHRFEFKPGRFLGVLPSDENRTLFVGGLKEEWSCEHICKLLEGQMPGLL 238
            +QP C SDL  AL+DD            G  W  R+  VP+  GVEIFVGGLTRSTRRDMLRDWFQHAG+VTEVRIARDKRRRRCRGYGYVRFATSEQANRAI+TMHRFEFK GRFLGVLPSDENRTLFVGGL+EEWSC +IC+LL+ +M  LL
Sbjct:   74 QQPHC-SDLRDALNDDXXXXXXXESLDLGAVWASRE-FVPK-PGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMVRLL 224          
BLAST of mRNA_H-paniculata_contig1949.4929.1 vs. uniprot
Match: A0A836CKV5_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV5_9STRA)

HSP 1 Score: 163 bits (413), Expect = 3.580e-37
Identity = 84/171 (49.12%), Postives = 111/171 (64.91%), Query Frame = 0
Query:  128 GVEIFVGGLTRSTRRDMLRDWFQHAGDVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIETMHRFEFKPGRFLG-------------------VLPSDENRTLFVGGLKEEWSCEHICKLLEGQMPGLLKVEPIPDREDRGKIRTFCFLEFASHPEAALVLNRHQVETSA 279
            GVEIFVGGLTRS+ R++L D F H GD+TEVRIARDKRRRRCRGYG+VRF TSEQAN A+E+M  F+FK G +L                    VLPSDENRTL+  G++E+ S + +C  L     G+ ++  +  +ED  K+R FCF+EF ++ +AA+ L  H+    A
Sbjct:  154 GVEIFVGGLTRSSTRELLYDCFSHIGDITEVRIARDKRRRRCRGYGFVRFRTSEQANMAVESMQAFQFKRGCYLSALLNAKKIAXXXXXXXXXXVLPSDENRTLYACGIEEDVSPDAVCWFLTRSFEGIKRIHLMWGKEDVCKLRPFCFIEFHTNEQAAVALLSHRQSMGA 324          
BLAST of mRNA_H-paniculata_contig1949.4929.1 vs. uniprot
Match: A0A836CJD8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD8_9STRA)

HSP 1 Score: 159 bits (403), Expect = 3.230e-36
Identity = 81/187 (43.32%), Postives = 112/187 (59.89%), Query Frame = 0
Query:  128 GVEIFVGGLTRSTRRDMLRDWFQHAGDVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIETMHRFEFKPGRFLGVLPSDENRTLFVGGLKEEWSCEHICKLLEGQMPGL--------------------------LKVEPIPDREDRGKIRTFCFLEFASHPEAALVLNRHQVETSATNGGSTERP 288
            GVEIFVGGLTR++  +ML DWF H G++TEVR+ARDKRRRRCRGYG+VRF  SEQAN AIE M  ++FK G +LG+LPSDENRTL+V G+ + WS + +         G+                          ++++ + DRE   ++R FCF+EF +H  A     R+  ++     GS++ P
Sbjct:  233 GVEIFVGGLTRASSAEMLYDWFCHLGEITEVRVARDKRRRRCRGYGFVRFRNSEQANLAIEAMQGYQFKKGCYLGMLPSDENRTLYVSGMCQSWSQDQVHAYFSANFEGVKRQVELCAARDAAARRAPLCWRRVASIRMQLVWDRETPSRLRPFCFVEFDTHEHATSAHARYHPDSDR---GSSDSP 416          
BLAST of mRNA_H-paniculata_contig1949.4929.1 vs. uniprot
Match: A9STT2_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9STT2_PHYPA)

HSP 1 Score: 100 bits (249), Expect = 2.000e-19
Identity = 58/153 (37.91%), Postives = 85/153 (55.56%), Query Frame = 0
Query:  125 RHSGVEIFVGGLTRSTRRDMLRDWFQHAGDVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIETMHRFEFKPGRFLGVLPSDENRTLFVGGLKEEWSCEHICKLLEGQMPGLLKVEPIPDRED---RGKIRTFCFLEFASHPEAALVLNRHQ 274
            +H  +E+FVGGL + T  + L   F   GDV EVR+ ++ +  + +GY ++RFA++  A RA   + R E + GR  GVLPS+EN TLF+G + + W  E + + L+     +  VE I   ED    G  R F F+EF +H EA     R Q
Sbjct:   14 KHKKLEVFVGGLDKETTEEELESVFGRVGDVVEVRLMKNAQTGKNKGYAFIRFASAAIAKRASHDLERVEIR-GRSCGVLPSEENDTLFLGNISKLWKKETVLETLKKF--AIENVEDITLMEDPQLEGVNRGFAFIEFNTHKEALNAFRRLQ 163          
BLAST of mRNA_H-paniculata_contig1949.4929.1 vs. uniprot
Match: A0A0K9QXL1_SPIOL (Uncharacterized protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QXL1_SPIOL)

HSP 1 Score: 103 bits (256), Expect = 1.630e-18
Identity = 59/160 (36.88%), Postives = 88/160 (55.00%), Query Frame = 0
Query:  129 VEIFVGGLTRSTRRDMLRDWFQHAGDVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIETMHRFEFKPGRFLGVLPSDENRTLFVGGLKEEWSCEHIC-KLLEGQMPGLLKVEPIPDREDRGKIRTFCFLEFASHPEAALVLNRHQVETSATNGGSTER 287
            +EIFVGGL R    D ++  F+  GDV EVR+ +D    + RG+ +VRFAT +QA RA+  M     + G+  G  P+++N TLF+G +   W+ E I  KL +  + G+  +  + D    G  R FCF++FA H +A     R Q + +    G TER
Sbjct:  374 LEIFVGGLDREVVDDDVKKTFEKVGDVVEVRLLKDPSTNKNRGFAFVRFATKDQAKRALTEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKDFNVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQKQDAVF--GHTER 530          
BLAST of mRNA_H-paniculata_contig1949.4929.1 vs. uniprot
Match: A0A7C9F016_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9F016_OPUST)

HSP 1 Score: 102 bits (254), Expect = 2.430e-18
Identity = 60/159 (37.74%), Postives = 86/159 (54.09%), Query Frame = 0
Query:  130 EIFVGGLTRSTRRDMLRDWFQHAGDVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIETMHRFEFKPGRFLGVLPSDENRTLFVGGLKEEWSCEHIC-KLLEGQMPGLLKVEPIPDREDRGKIRTFCFLEFASHPEAALVLNRHQVETSATNGGSTER 287
            EIFVGGL R    D L+  F+  G+V EVR+ +D    + RG+ +VRFAT +QA RA+  M     + G+  G  P+++N TLFVG +   W+ E I  KL +  + G+  +  + D    G  R FCF++FA H +A     R Q   +    G TER
Sbjct:  335 EIFVGGLDREVVEDDLKKAFEKVGEVVEVRLLKDPLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFVGNICNTWTKEAIKQKLKDYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQKPDAIF--GHTER 490          
BLAST of mRNA_H-paniculata_contig1949.4929.1 vs. uniprot
Match: A0A314LEQ0_NICAT (Nucleolin 2 n=18 Tax=Nicotiana TaxID=4085 RepID=A0A314LEQ0_NICAT)

HSP 1 Score: 102 bits (255), Expect = 2.790e-18
Identity = 64/181 (35.36%), Postives = 98/181 (54.14%), Query Frame = 0
Query:  103 DDCEEACRLDSS----GWHRRDGLVPRHSGVEIFVGGLTRSTRRDMLRDWFQHAGDVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIETMHRFEFKPGRFLGVLPSDENRTLFVGGLKEEWSCEHIC-KLLEGQMPGLLKVEPIPDREDRGKIRTFCFLEFASHPEAAL---VLNRHQV 275
            +DCEEA  LD        H ++ +  +   +E+FVGGL R    + L+  FQH G+V +VR+ R+    + +GY +V+FAT EQA+RA+  M     + G+  G  PS++N TLF+G +   W+ E +  KL +  + G+  V  + D +  G  R F FLEF  H +A     +L R  V
Sbjct:  643 EDCEEAEALDDERAQLAAHAKERM--KRKELEVFVGGLDRDAVEEDLKRVFQHVGEVIDVRMHREVSTNKNKGYAFVKFATKEQASRALSEMRNPVIR-GKRCGTAPSEDNDTLFLGNICNTWTKEAVRQKLKDYGVEGVQSVNLVADPKHEGLSRGFAFLEFPCHTDAMTAYKILQRPDV 820          
BLAST of mRNA_H-paniculata_contig1949.4929.1 vs. uniprot
Match: A0A803NB38_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NB38_CHEQI)

HSP 1 Score: 100 bits (250), Expect = 3.810e-18
Identity = 58/160 (36.25%), Postives = 87/160 (54.37%), Query Frame = 0
Query:  129 VEIFVGGLTRSTRRDMLRDWFQHAGDVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIETMHRFEFKPGRFLGVLPSDENRTLFVGGLKEEWSCEHIC-KLLEGQMPGLLKVEPIPDREDRGKIRTFCFLEFASHPEAALVLNRHQVETSATNGGSTER 287
            +EIFVGGL R    D ++  F+  G+V EVR+ +D    + RG+ +VRFAT +QA RA+  M     + G+  G  P+++N TLF+G +   W+ E I  KL +  + G+  +  + D    G  R FCF++FA H +A     R Q   +    G TER
Sbjct:  253 LEIFVGGLDREVIEDDVKKTFEKVGEVVEVRLLKDTLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKDYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQKPDAIF--GHTER 409          
BLAST of mRNA_H-paniculata_contig1949.4929.1 vs. uniprot
Match: UPI00053FBE2C (nucleolin-like isoform X1 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FBE2C)

HSP 1 Score: 100 bits (250), Expect = 8.040e-18
Identity = 59/160 (36.88%), Postives = 86/160 (53.75%), Query Frame = 0
Query:  129 VEIFVGGLTRSTRRDMLRDWFQHAGDVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIETMHRFEFKPGRFLGVLPSDENRTLFVGGLKEEWSCEHIC-KLLEGQMPGLLKVEPIPDREDRGKIRTFCFLEFASHPEAALVLNRHQVETSATNGGSTER 287
            +EIFVGGL R    D ++  F+  G+V EVR+ +D    + RG+ +VRFAT +QA RA+  M       G+  G  P+++N TLF+G +   W+ E I  KL E  + G+  +  + D    G  R FCF++FA H +A     R Q   +    G TER
Sbjct:  344 LEIFVGGLDREVVEDDVKTAFEKVGEVVEVRLLKDPSTNKNRGFAFVRFATKDQAKRALSEMKN-PVICGKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKEYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQKADAVF--GHTER 500          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1949.4929.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9D0_9PHAE1.730e-7947.32RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYA2_ECTSI3.280e-5974.03RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CKV5_9STRA3.580e-3749.12RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CJD8_9STRA3.230e-3643.32RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A9STT2_PHYPA2.000e-1937.91Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A0K9QXL1_SPIOL1.630e-1836.88Uncharacterized protein n=2 Tax=Spinacia oleracea ... [more]
A0A7C9F016_OPUST2.430e-1837.74Uncharacterized protein (Fragment) n=1 Tax=Opuntia... [more]
A0A314LEQ0_NICAT2.790e-1835.36Nucleolin 2 n=18 Tax=Nicotiana TaxID=4085 RepID=A0... [more]
A0A803NB38_CHEQI3.810e-1836.25Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]
UPI00053FBE2C8.040e-1836.88nucleolin-like isoform X1 n=2 Tax=Beta vulgaris su... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 211..289
e-value: 0.077
score: 16.5
coord: 130..204
e-value: 2.2E-19
score: 80.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 131..196
e-value: 2.8E-17
score: 62.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 129..208
score: 16.466
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 210..302
score: 8.876
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 209..283
e-value: 1.8E-9
score: 39.5
NoneNo IPR availablePANTHERPTHR21245FAMILY NOT NAMEDcoord: 67..267
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 130..271

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1949contigH-paniculata_contig1949:5955..13438 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1949.4929.1mRNA_H-paniculata_contig1949.4929.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1949 5878..13453 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1949.4929.1 ID=prot_H-paniculata_contig1949.4929.1|Name=mRNA_H-paniculata_contig1949.4929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1258bp
MAPRQGPHQLFHSDVWGGFRQALPPLGDPGAIGGTGIGRAVADSRHVDPE
TKNPVHNNNHCEGSSGAFSPQQQQQQQQDDLADNNDEQPMCFSDLEGALD
DDDDCEEACRLDSSGWHRRDGLVPRHSGVEIFVGGLTRSTRRDMLRDWFQ
HAGDVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIETMHRFEFKPGRF
LGVLPSDENRTLFVGGLKEEWSCEHICKLLEGQMPGLLKVEPIPDREDRG
KIRTFCFLEFASHPEAALVLNRHQVETSATNGGSTERPGGNGEEGMLSVT
NAVNSAGTSTAAFEREARVSSISSCPESSCEVVASFAMLPGQGIVRGDGA
ASATCGDGASSGSCASTPAPARTAAASEPASATTDHFLYDEGNPLDFEGA
GDGSGIGGNSSLQDAGVVDSSRQQSLGIHNDTTGGSGETYGKERRLSAVS
EQDHGRETVFSWGKDASVCPPACSTGGQRAGGGSGGGVPLVVGGTVLKVD
WADPLRYHIHLNGGIKGPCAVQEVGMIESRPIRQGTHPRGRPTTLVPGRG
VPGTLEWLNRHHPPNAHMGGPSPNWQEASGDGGLGGGYRNSLGGRICQQY
SRYHNTHQYPQQRAVGGSPTCHHGQLSYPNSFVSSGTRERERGHAVVDPP
SAVTMLSPSMRTRSYHDPLSPSISEQGPSESSANGGSGRGRADSFAGLPS
VGSSQGCPAYLQPENRSSGGGVGVGLQQQNEDSGARHGCVQPRFRPHPPG
HLTADLRPSPASESLDPHRYRALELDVGAGGDGGGCDRRRVTGASSGVAA
RELNVGSYGSVSPNNGVHSLSHHHNGGSGGRGHRVLPHSWSVTSPQRGRD
TQERWQQCIQTTDSGSWGREQALVSRAQPWPAAMAKVHVGNNRRTGGQSD
DDEGASSRWMDRGGRAERRETTTSEALGARSVYDACSHPPSSHQMDAMEP
FPRHGSRVPTGLVIGNPAGVLPRRGSGRWDQQQQQGGWTSEVGSASVSSG
LSSHRRFNDSEVTREGPSPAGFPVYESGFDNSANPTPRHASTLLNSQGSS
RTRIQSSATPPLSASGDIGSDSAAGLPSATFTKAPPPPGFSVPCKLVPSL
GPGAGGADPPLSSAAVAAVDGSRDWLRLHGGGGGGGSWQGGGGGGVVVGN
GADISVGAAGSGSGSGGENMELSWAARQGNDGSGAAGTSAIAGSCGMRIC
DQGERFMADVQVEQQLLWDVTGGGGGAGDSGRGAHQSSWLSTVLPPRRRE
GEGTWGP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf