mRNA_H-paniculata_contig19485.4928.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19485.4928.1
Unique NamemRNA_H-paniculata_contig19485.4928.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19485.4928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19485contigH-paniculata_contig19485:753..3533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size262
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19485.4928.1prot_H-paniculata_contig19485.4928.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19485 2089..3533 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929479.6250641-UTR-H-paniculata_contig19485:752..7901622929479.6250641-UTR-H-paniculata_contig19485:752..790Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19485 753..790 -
1691480879.8303719-UTR-H-paniculata_contig19485:752..7901691480879.8303719-UTR-H-paniculata_contig19485:752..790Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19485 753..790 -
1622929479.6448421-UTR-H-paniculata_contig19485:2087..20881622929479.6448421-UTR-H-paniculata_contig19485:2087..2088Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19485 2088..2088 -
1691480879.8402464-UTR-H-paniculata_contig19485:2087..20881691480879.8402464-UTR-H-paniculata_contig19485:2087..2088Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19485 2088..2088 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929479.6578307-CDS-H-paniculata_contig19485:2088..21681622929479.6578307-CDS-H-paniculata_contig19485:2088..2168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19485 2089..2168 -
1691480879.8490546-CDS-H-paniculata_contig19485:2088..21681691480879.8490546-CDS-H-paniculata_contig19485:2088..2168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19485 2089..2168 -
1622929479.6753778-CDS-H-paniculata_contig19485:3391..35331622929479.6753778-CDS-H-paniculata_contig19485:3391..3533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19485 3392..3533 -
1691480879.8585029-CDS-H-paniculata_contig19485:3391..35331691480879.8585029-CDS-H-paniculata_contig19485:3391..3533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19485 3392..3533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19485.4928.1

>prot_H-paniculata_contig19485.4928.1 ID=prot_H-paniculata_contig19485.4928.1|Name=mRNA_H-paniculata_contig19485.4928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
RKRANVGPKADGHRTASEVGEGLQSATPLTATPATASSTSMTSPSPPEPF
PKISPHRRGYCVRHHAGPARMPR*
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mRNA from alignment at H-paniculata_contig19485:753..3533-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19485.4928.1 ID=mRNA_H-paniculata_contig19485.4928.1|Name=mRNA_H-paniculata_contig19485.4928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2781bp|location=Sequence derived from alignment at H-paniculata_contig19485:753..3533- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTAAGCGAGCAAATGTTGGTCCCAAGGCCGACGGTCACCGGACGGCGAG
CGAGGTCGGCGAGGGTCTCCAGTCGGCGACTCCTCTCACCGCCACGCCGG
CAACCGCGAGCAGCACCTCCATGACCTCTCCATCCCCGCCAGGTGCGTAC
GGGAGCGCCAGCGTTACTCGCAATCGACCGCTCAACAACGTGCAGCATAT
CCGAAACAAAGATGTAGTAGCAGTGTCGGGCCATCTCGGTGTAGTGGCTC
TAGGCGTTTGCGCTCCGACGTCGTTGCATGTATATACACGTAGAAACGTC
GCACACACTCACGATATGCCTCAAGTCGTTATGATCAATAGTCGTACCCT
CGCTTTTCCCCCCGCCGCCTCGCCGCCCCGCCCCCGTCGTCTCGCCTGTC
TTTCGACCACTGACACGCCTCCACCTTTCTTTAGAGCCCTTCCCCGAGAT
TCCGCCTCACCTCCGCAAATACTGCGTGAGGCACGAGACCCTCCCAGCAT
GGCCACCTAGGTAAGGTTACTCGGTGATGTAAGGACGGTGTGGTATATGG
CGAATTTCCCGCTCGGACTCCGGTAAATGCTGGTTCGTCGTGTCGCACTC
GGGCGATGCCATCTAGTAGGGCGAAGCTAGTGGCGAATGCAGTATCTCTC
CGACGAACGAACCAGAGAGAGTGAACCCAATATCCTGTGTGGATTTACCG
TCCGGACGTCAGCTGGTAGGGAGTCCCGAAGAGAGACACGGCAGAACACT
ATAGGACGGAAATCGCAGATACCGTGTGTCCCGATAAATTCCCGGACGCA
AGACCCAACTTCACCCGTATACCCCCGCTCTCGTTGCCGTTCGATGTTCC
GTAATTTTTTCATACACTCGGTGTCCGACGTCAGCGGGACCTCGTCGACT
CCGAGTTTCTCGTCGACTGGGGATCGCAAGCGAGCAAATGTTGGTCCCAA
GGCCGACGGTCACCGGACGGCGAGCGAGGTCGGCGAGGGTCTCCAGTCGG
CGACTCCTCTCACCACCACGCCGGCAACCGCGAGCAGCACCTCCATGACC
TCTCCATCCCCGCCAGGTGCGTACGGAACCGCTAGCGTTACTCGCAATCG
ACGCGTCAACAACGTGCAGCATATCCGAAACAAAGATGTAGTAGCAGTGT
CGGGCCATCGTCGTGCAGTGGCTCTAGGCGTTTGCGCTCCGACGTCGCTG
CATATGTATATACACGTAGAAACGTCGCACACACTCACGATATGCCTCAA
GTCGTTATGATCAATAGTCGTACCCTCGTTTTTCCCCCCGCCGCCTCGCC
GCCCCGCCCCGCCCCCGTCGTCTCGCTTGTCTTTCGACCACTGACACGCC
TCCACCTTTCTTTAGAGCCCTTCCCCAAGATCTCGCCACACCGCCGCGGA
TACTGCGTGCGGCATCACGCCGGCCCTGCACGGATGCCTAGGTAGGGTTA
CTCGGTGATGTAAGGACGGTGTGATATAAGGCGAATTTCCCGGTCGGACT
CCGGTACATGCTGGTTCGTCGTGTCACACTCGAGCGGTGCCGTCTAGTAG
GGCGAAGCTAGTGGCAAATACAGTATCTCTCCGACGAACGAACCAGAGAG
AGTGAACCCAATATCCTGTGTGGATTTACCGTCCGGACGTCAGCTGATAG
GGAGTCCCGAAGAGAGACACGGCAGAATAATATAGGACGGAAATCGCAGA
TACCGTGTGTCCCGATAAATTCCCGGACGCAAGACCCAACATCACCCGTA
TACCCCCGCTCTCGTTGCCGTGCGATATTCCGTCATTTTTTCATACACTC
GGTGTCCGACGTCAGCGAGACCTCGTCGACTCCGAGTTTCTCGTCGACGG
GGGACCGTAAGCGAGCAAATGTTGGTCCCAAGGCCGACGGTCACCGGACG
GCGAGCGAGGTCGGCGAGGGTCTCCAGTCGGCGACTCCTCTCACCGCCAC
GCCGGCAACCGCGAGCAGCACCTCCATGACCTCTCCATCCCCGCCAGGTG
CGTACGGAACCGCTAGCGTTACTCGCAATCGACGCGTCAACAACGTGTAG
CATATCCCAAACAAAGATGTAGTAGCAGTGTCGGGCTATCTTCATGTAGT
GGCTCTAGGCGTTTGCGTTCCGACGTCGCTGCATGTATATACACGTAGAA
ACGTCGCACACACTCACGATATGCCTCAAGTCGTTATGATTAATAGTCGT
ACCCTCGCTTCTCCCCCCGCCGCCTCGCCGCCCCGCCCCCGTCGTCTCGC
CTGTCTTTCGACAACTGACACGCCTCCACCTTTCTTTAGAGCCCTTTCCC
GAGATTCCGCCTCACCTCCGCAAATACTGCGTGAGGCACGAGACCCTCCC
AGCATGGCCACCTAGGTATGGTTACTCGGTGATGTAAGGACGGTGTGGTA
TAAGGCGAATTTCCCGCTCGGACTCCGGTAAATGCTGGTTCGTCGTGTCG
CGTTCGGGCGTTGCCGTCTAGTAGGGCGAAGATAGTGGCAAATGCAGTAT
CTCTCCGACGAACGAACCAGAGAGAGTGAACCCAATATCCTGTGTGGATT
CACCGTCCGGACGTCAGCTGGTAGGGAGTCCCGAAGAGAGACACGGCCGA
ACACTATAGGACGGAAATCGCAGATACCGTGTGTCCCGATAAATTCCCGG
ACGCAAGACCCGACATCACCCGTATACCCCCGCTCTCGTTGCCGTTCGAT
GTTCCGTAATTTTTTCATACACTCGGTGTCCGACGTCAGCGAGACCTCGT
CGACTCCGAGTTTCTCGTCGACGGGGGACCG
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Coding sequence (CDS) from alignment at H-paniculata_contig19485:753..3533-

>mRNA_H-paniculata_contig19485.4928.1 ID=mRNA_H-paniculata_contig19485.4928.1|Name=mRNA_H-paniculata_contig19485.4928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig19485:753..3533- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTAAGCGAGCAAATGTTGGTCCCAAGGCCGACGGTCACCGGACGGCGAG
CGAGGTCGGCGAGGGTCTCCAGTCGGCGACTCCTCTCACCGCCACGCCGG
CAACCGCGAGCAGCACCTCCATGACCTCTCCATCCCCGCCAGCGTAAGCG
AGCAAATGTTGGTCCCAAGGCCGACGGTCACCGGACGGCGAGCGAGGTCG
GCGAGGGTCTCCAGTCGGCGACTCCTCTCACCGCCACGCCGGCAACCGCG
AGCAGCACCTCCATGACCTCTCCATCCCCGCCAGAGCCCTTCCCCAAGAT
CTCGCCACACCGCCGCGGATACTGCGTGCGGCATCACGCCGGCCCTGCAC
GGATGCCTAGGTAGAGCCCTTCCCCAAGATCTCGCCACACCGCCGCGGAT
ACTGCGTGCGGCATCACGCCGGCCCTGCACGGATGCCTAGGTAG
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