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Homology
BLAST of mRNA_H-paniculata_contig19484.4927.1 vs. uniprot
Match: D7FXH9_ECTSI (Centrosomal protein 120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH9_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 2.260e-19 Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 4 WRVGEETAFATRLRKKDQALKEKWAVRETAQRRDRTQAQQEYGKLEGKLRKALSEVEARERGLKTREEAWRTE 222
WRV EE FA RLR+KD+AL++KW RE +RR+ + AQ +Y KLEGKLRKALSEV ARER LK REE+W+T+
Sbjct: 1022 WRVVEEAKFAKRLREKDEALEQKWEAREATRRRELSHAQADYSKLEGKLRKALSEVGARERQLKAREESWKTD 1094
BLAST of mRNA_H-paniculata_contig19484.4927.1 vs. uniprot
Match: A0A835Z851_9STRA (DUF3668 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z851_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 6.840e-10 Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 4 WRVGEETAFATRLRKKDQALKEKWAVRETAQRRDRTQAQQEYGKLEGKLRKALSEVEAR 180
WR EE AFA +L KD AL+++WA R +RR QAQ EY +LEGKLR+AL++VE R
Sbjct: 927 WRAREEAAFARKLAAKDAALEQRWAQRXAERRRSLAQAQAEYARLEGKLRRALTDVEVR 985
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 89.7 |
| Seed ortholog evalue | 6e-16 |
| Seed eggNOG ortholog | 2880.D7FXH9 |
| Preferred name | CEP120 |
| KEGG ko | ko:K16459 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0006810,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007097,GO:0007098,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008022,GO:0008150,GO:0008283,GO:0009987,GO:0010564,GO:0010638,GO:0010824,GO:0010825,GO:0015630,GO:0016043,GO:0021537,GO:0021543,GO:0021846,GO:0021987,GO:0022008,GO:0022027,GO:0022402,GO:0030154,GO:0030900,GO:0030953,GO:0031023,GO:0031122,GO:0031344,GO:0031346,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032886,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045724,GO:0045787,GO:0046605,GO:0046607,GO:0046907,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051726,GO:0060322,GO:0060491,GO:0061351,GO:0065007,GO:0070507,GO:0071840,GO:0090068,GO:0097435,GO:0120032,GO:0120034,GO:0120035,GO:1902017,GO:1902115,GO:1902117 |
| EggNOG free text desc. | interkinetic nuclear migration |
| EggNOG OGs | 2CMAG@1,2QPT0@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03036 |
| Exons | 3 |
| Model size | 224 |
| Cds size | 222 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19484.4927.1 >prot_H-paniculata_contig19484.4927.1 ID=prot_H-paniculata_contig19484.4927.1|Name=mRNA_H-paniculata_contig19484.4927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
QWRVGEETAFATRLRKKDQALKEKWAVRETAQRRDRTQAQQEYGKLEGKL
RKALSEVEARERGLKTREEAWRTE back to topmRNA from alignment at H-paniculata_contig19484:618..3771+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig19484.4927.1 ID=mRNA_H-paniculata_contig19484.4927.1|Name=mRNA_H-paniculata_contig19484.4927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3154bp|location=Sequence derived from alignment at H-paniculata_contig19484:618..3771+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGGCGGGTCGGAGAAGAGACGGCGTTTGCCACGCGTCTCAGAAAGAA
GGTGAACGTATTCATGTGTTGTCGACACCGCATGTGTGAACGATGGCTTT
ATTCTGATGAATGAAACGAGCGAATACCATGAGAGATTTGGTGGTGGTTA
TAATGGTTGTTTAGCAACACGACGAATTGGTCTGTGTAGGGTACGGACGC
TGTCTACGTGGGAGTGCAGCGAACTGTTGGTTGGGGCGATATAGATCTTG
ACTGAATGGGCTCTTTATCGAGGACAAAATGCGGAATGCACGGACGTACG
TATGTACCCGTGGCTTGACCACTATTGTTATACAACATGTATGGTAGAGT
TCGATGCCCGGCATGATTCAACAGTACCGTCGTAGTCCAACGGTACTGTA
ATAATCCAACACCACCGTCGCAATCCAACAGTACTGTCACAGTCCACCAT
CACCGAAAACGTTCGTGTCCATGGGCTATGTAGAAGTAACACGGTATCGT
CAACGTAAACAGTGGTCGTCACTGACGTACCCGTGACCTGTCCACTATAA
TTGCACTCGAATGTTGCTGGATGGAGTTCAGCTGATGATCAATCAATAGT
TCTGTTTGCATCACCTACTGCAGTCCGACGGTAGGTTGTGTTCTCGTGCT
GTTTTTTTTTTTTTTCCCATTGTGGCGTTATGCATGCATACATGTTTGTG
ATGTCGTGTGGCTCTTTTGTTGGGGGGGGAGGCAGGACCAGGCCTTGAAA
GAGAAGTGGGCCGTGAGGGAGACTGCCCAACGGAGGGATAGGACACAAGC
GCAGCAGGAGTATGGAAAGGTGTGTGATGAGGGATGGGAGGCGATGGTTC
ACTTAGCTACATCTTTACGAGCGTCGGTGCTATTCCCCCTGATCATGGGG
AAAGAGAGAAACGGCGATATGTCACCATCATTGTCCAAGATCTACTAAGC
GGCTAAGGCCTTTTGTCCACGAGATGTTTTCGGGCTCGTAGATAGCATGT
AGCTCCTGATATTTTGGATTTGGGGTGTTTTAATATTTGAAATATTTATC
TTGAACTAAACATTTGCTCATAGGGCGTACATGTGTGACCAGCAGCAGGC
GCGGTGGAAAGTTGGAGTTGACAGTATTTTGCAGGGAAAGGGTCGATCGG
ATTGTGTGCGGGCGAAACAGTGTTTGGTGGGTCTTCCCGACGCCTCAAGC
GTAGAAGAAGACCAAAAAATTCTCTCATGTAATTTGCTATTGTGTTTGGT
ATTCGATCTTTTTTTCTTTTTTTTTCCCAACATTCATTGAATCGCCCTTT
TAACGTCTTCGTCTTGGGGAGCTTAATTTTCGTGACATGAGACCTGCTAA
CTTGTGTGGTGTTGTTTTGCTACTAACAGCATATTGGTGAAATGGGAACC
CAAGTTTGAGATGGGGACTCTGGGTTATATTGGAAATAGGCTGTTTCCTG
AAAATCGAATCAGCCTATTTCCAATATAACCCAGAGTCCCCATCTCAAAC
TTGGGTTCCCATTTCACCAATATGCTGTTTACTGTACAAATTTGTCTCAT
ATTGGGTAGCTCCATATGTTGCTTCATCCATAGCTAATTTTTTATAAATG
TCACGCTGTATCGAACCCTTGTCGTGAAGCACACACGTGGAATACACGTC
ACCCCCTCCTATTGGTCATAATCTAATTGTGCTGATAAGTGTACTGTAAA
TGAGTAGAATTTGAAGTCAGCCCCATAACGTCAAGATGGGCACAGGGGGA
CCCATTATGTGAGAGCTTGAGCTTTGGTTCAACCGACTAGGACAGGGTTT
AACTTGAGATTTTGTTTTTAGGGTTATATATATATATATATATATATATG
TTTGCTGTTCATGTAGCAACTGTTTCATGATATACCTACAGTACAGTAAC
ACATGCGAGTGATACGATGATACTCCCTTATGAAGGTTGCCGTGGCTCAT
GTCGTGCGTGGTCGAAGAGGTGCATGAAGTACTGGTATTTGCTCATGATG
GGGTCAGAATTTGATATAGGGAACAGGATCCTTTCGGTGTACCACGCAGT
ATACTGCCCAAATATCCGTCAAGTCTAGTTGAAATTCAATTCGTCTGGTG
GGCATGCGTGCTTTGTTGTGGATGAGCTATAGCAGTGGTGATGGGGGAGT
AAGCACTTGTTCATGTACAGGTCTCTCAGCGTAGTGTACTCCAAGGTCGC
ACACTGGAAGGCTAGCTAGGCCCTAGGCTAGGGGCTGGCACTCCAAAACA
TGACTACACTATGCATGTAGGAGGGCTACACAATGAATTTTTCTATATCC
CCTATTTTCTGTCCTATGTGTCATCACATGCTTTGATGTTGTCCCGCGAT
TGAAGTTTTTCGGCTGTACCTGTTGGTGATGAGAAATACTGTACATTAAG
GCTAAAACGAGTATATGCATATTTTACATGAAAATATGACAAGCCTGAGG
CATAAGATATGCCCCTCCAGGTTATACATGGACACTTATTTAGATTGCCC
GCACATTGTGAGGTTATATGTATTTGTGTGTAGAAATGAAGATACGTCCA
TTAGTCCCCTTGGTCATGGTCTAGTGTTGCTAAAAAGTGTTTTTATTTTT
TTTAACTCCCGCAAGGCTAAGGCAAAAACCTCTATCCGATGCTTCCTACT
AATAAGGGTATTGAAACCAACTGAACTTTGAAGTTGGTCGAGTAATTATA
TGAGCTTTAGCTCCCCCCGCAACCCCACGACCGAATAAAATTTTAACATT
GGAAAAAATCAAAAGAGCTAATTGTCAAAGGCAGTTTCATCTGTGCAATA
CCTGAAAAATATAAATAAAATCGAAAGTAACGATATAAGTTGCCGACTTT
CCAAAAAAAGAAATGGTAAGATATCCCCCTCTTGTGGTGGTAACATACTT
GGTATATCAAAGAAATCAAAATAGTGTAACACCATTCGGTTAACGTCTAT
CCGATGAGCAGATAATCTCTCAATAGGGCGATATATATATGTACATATAT
ATATATATATATATATATATATTGATGATATTTTGAGATATAATCTTTGA
CTATGACCTATCACAGTTGGAGGGAAAGCTGCGGAAGGCCTTGTCAGAGG
TGGAGGCAAGGGAGCGAGGGCTCAAAACTCGGGAAGAAGCCTGGAGGACA
GAAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig19484:618..3771+ >mRNA_H-paniculata_contig19484.4927.1 ID=mRNA_H-paniculata_contig19484.4927.1|Name=mRNA_H-paniculata_contig19484.4927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig19484:618..3771+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGGCGGGTCGGAGAAGAGACGGCGTTTGCCACGCGTCTCAGAAAGAA
GCAGTGGCGGGTCGGAGAAGAGACGGCGTTTGCCACGCGTCTCAGAAAGA
AGGACCAGGCCTTGAAAGAGAAGTGGGCCGTGAGGGAGACTGCCCAACGG
AGGGATAGGACACAAGCGCAGCAGGAGTATGGAAAGGACCAGGCCTTGAA
AGAGAAGTGGGCCGTGAGGGAGACTGCCCAACGGAGGGATAGGACACAAG
CGCAGCAGGAGTATGGAAAGTTGGAGGGAAAGCTGCGGAAGGCCTTGTCA
GAGGTGGAGGCAAGGGAGCGAGGGCTCAAAACTCGGGAAGAAGCCTGGAG
GACAGAATTGGAGGGAAAGCTGCGGAAGGCCTTGTCAGAGGTGGAGGCAA
GGGAGCGAGGGCTCAAAACTCGGGAAGAAGCCTGGAGGACAGAA back to top
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