mRNA_H-paniculata_contig19481.4926.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19481.4926.1
Unique NamemRNA_H-paniculata_contig19481.4926.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19481.4926.1 vs. uniprot
Match: D7FTP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP6_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.210e-23
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 QADVMSIEVLLLEDLVECKEKLSEELTSTASRAVTIEGVVAALPNEDDVVRMRAYNWQDVQDLQGV 198
            +ADV SIEV+LLEDLVECKEKL EEL ST++R  T+ GVVAALP E D+ R+RAYNWQDVQDLQGV
Sbjct:   24 KADVTSIEVMLLEDLVECKEKLEEELKSTSARGDTMNGVVAALPAEGDIARLRAYNWQDVQDLQGV 89
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BLAST of mRNA_H-paniculata_contig19481.4926.1 vs. uniprot
Match: A0A6H5KT89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT89_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 9.060e-23
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 QADVMSIEVLLLEDLVECKEKLSEELTSTASRAVTIEGVVAALPNEDDVVRMRAYNWQDVQDLQGV 198
            +ADV SIEV+LLEDLVECKEKL EEL ST++RA T+ GVVAALP E D+ R+RAYNWQDVQDLQ V
Sbjct:  245 KADVTSIEVMLLEDLVECKEKLEEELKSTSARAETMNGVVAALPAEGDIARLRAYNWQDVQDLQEV 310
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BLAST of mRNA_H-paniculata_contig19481.4926.1 vs. uniprot
Match: A0A835Z020_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z020_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.740e-14
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 QADVMSIEVLLLEDLVECKEKLSEELTSTASRAVTIEGVVAALPNEDDVVRMRAYNWQDVQDLQ 192
            +AD++SIEV+LLED+ +C+E+L  EL ST +R   I+GVVAALP  DD  R R Y+W+D+Q LQ
Sbjct:   24 KADLISIEVILLEDMSDCREQLVAELASTVTRVDRIDGVVAALPRSDDRSRARLYDWEDIQSLQ 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19481.4926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTP6_ECTSI3.210e-2375.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT89_9PHAE9.060e-2375.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z020_9STRA1.740e-1456.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19481contigH-paniculata_contig19481:3514..4653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue2.7e-17
Seed eggNOG ortholog2880.D7FTP6
Hectar predicted targeting categoryother localisation
EggNOG OGs2C8GG@1,2T1QJ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size198
Cds size186
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19481.4926.1prot_H-paniculata_contig19481.4926.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19481 3514..4641 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929479.4790058-CDS-H-paniculata_contig19481:3513..36481622929479.4790058-CDS-H-paniculata_contig19481:3513..3648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19481 3514..3648 -
1691480879.7707295-CDS-H-paniculata_contig19481:3513..36481691480879.7707295-CDS-H-paniculata_contig19481:3513..3648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19481 3514..3648 -
1622929479.4913404-CDS-H-paniculata_contig19481:4590..46411622929479.4913404-CDS-H-paniculata_contig19481:4590..4641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19481 4591..4641 -
1691480879.7813516-CDS-H-paniculata_contig19481:4590..46411691480879.7813516-CDS-H-paniculata_contig19481:4590..4641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19481 4591..4641 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929479.5072405-UTR-H-paniculata_contig19481:4641..46531622929479.5072405-UTR-H-paniculata_contig19481:4641..4653Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19481 4642..4653 -
1691480879.7917576-UTR-H-paniculata_contig19481:4641..46531691480879.7917576-UTR-H-paniculata_contig19481:4641..4653Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19481 4642..4653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19481.4926.1

>prot_H-paniculata_contig19481.4926.1 ID=prot_H-paniculata_contig19481.4926.1|Name=mRNA_H-paniculata_contig19481.4926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MSIEVLLLEDLVECKEKLSEELTSTASRAVTIEGVVAALPNEDDVVRMRA
YNWQDVQDLQGV
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mRNA from alignment at H-paniculata_contig19481:3514..4653-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19481.4926.1 ID=mRNA_H-paniculata_contig19481.4926.1|Name=mRNA_H-paniculata_contig19481.4926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig19481:3514..4653- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGGACGTGATGTCGATCGAGGTTTTGCTTCTGGAGGACCTCGTCGA
GTGCAAAGAGAAGGTGAGCGAGCGATGGATGAATGGATGAATAAAAATAG
ATGTAGGTGTGTGTGTGTGTGTTTCTGTTGGTAATATCCAAATTACAACG
GTAGTGAAACTGACATTTTTTATTTTTTTTTTAACCCCCGGAAGGCTAAG
GCAAAAACCTTTATCCGATGCTTCCATACCGAAGTATTTCTACATTTCCT
TTAACAGAACAGAGTTGTTTGTTCCTCTACGGGGTAGGCGCCACCCCTGT
TCGGCCGAACCAAGTAGGCAGTGTGAGGGTTGCACCCAGTAAAAGACCTC
TGACTAGACTTGTAGTCATGCTCAGTTCACGGGCTATCATACCCGTTCGG
GCGTAGGTCCGTGTGAGCGAAACTGAGATAGACGAGATAAAAAGTGAAAT
GTTTATATTAGTTTTTAGTACGTGTACGTACATATGTGGGTCACGCTAAG
GTTTGTTTCTGTGAGAAATATGTCACTTTTGAAGAAGCTAGAGTTCTTTT
TTTGTCTGTTGACAAGGAATTGCCAAATTCGGTTTTGTTTTTTGCAGAAT
TCGGAAAAAATAAATCGTACGAGTGAACGAAGGACCGTGTCCATCAGACA
TGGCGTCGGTCGTGACTACCCTCCATATCACATGCTGTGTGTGACGGTTT
TGTGTGACCGGACCGACCGTGACTGGGCTCGTGAATATTGAAGTATAACG
TATATACCGGAAATGTAATGAAGTATGACACATATAGAAGAGGCAAAATT
GCTAAGCTGGAAGCGTTGTCGGACAGTTTTTCTGTTATGCCAGTTGACTG
TAACTGACTAGTTGACTGTAACTGACCAGGTAAACTTAGTCTGCATTCTT
GTAAATCGATGGTGGTCTGTCTCCCCATAGCATCGTACGCTTAACGTTCC
CACGATTTTTTGTGTATTTTGTTTTCTTTTTTTTTTTCACAAAAAAAAAA
AAAAGCTGTCAGAAGAGCTCACGTCTACGGCATCGAGAGCAGTCACGATT
GAGGGAGTGGTTGCGGCTTTACCGAACGAGGACGACGTGGTACGCATGAG
GGCATACAACTGGCAAGATGTTCAAGATTTACAGGGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig19481:3514..4653-

>mRNA_H-paniculata_contig19481.4926.1 ID=mRNA_H-paniculata_contig19481.4926.1|Name=mRNA_H-paniculata_contig19481.4926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig19481:3514..4653- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGATCGAGGTTTTGCTTCTGGAGGACCTCGTCGAGTGCAAAGAGAA
GATGTCGATCGAGGTTTTGCTTCTGGAGGACCTCGTCGAGTGCAAAGAGA
AGCTGTCAGAAGAGCTCACGTCTACGGCATCGAGAGCAGTCACGATTGAG
GGAGTGGTTGCGGCTTTACCGAACGAGGACGACGTGGTACGCATGAGGGC
ATACAACTGGCAAGATGTTCAAGATTTACAGGGGGTGCTGTCAGAAGAGC
TCACGTCTACGGCATCGAGAGCAGTCACGATTGAGGGAGTGGTTGCGGCT
TTACCGAACGAGGACGACGTGGTACGCATGAGGGCATACAACTGGCAAGA
TGTTCAAGATTTACAGGGGGTG
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