mRNA_H-paniculata_contig19459.4921.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19459.4921.1
Unique NamemRNA_H-paniculata_contig19459.4921.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19459.4921.1 vs. uniprot
Match: D7FPL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPL6_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.990e-15
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 VQQKLGCEEWNVEAHLNELLLCEEGCFYSEGRE-SEDPMAFGTLMINLPSEVDGGQLTVFDP 183
            V++ LG  EW VEA L+E+LLCEE CFYSEGRE  E P  F TLM  + S V GG  TVFDP
Sbjct:  157 VKEALGFGEWEVEASLSEMLLCEEDCFYSEGRECDESPGVFATLMFQMTSVVQGGVFTVFDP 218
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BLAST of mRNA_H-paniculata_contig19459.4921.1 vs. uniprot
Match: A0A1Y2HAB9_9FUNG (Fe2OG dioxygenase domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HAB9_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 1.490e-7
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    1 VQQKLGCEEWNVEAHLNELLLCEEGCFYSEGRESE-DPMAFGTLMINLPSEVDGGQLTVFDP 183
            +  KLGC E  +E HL ++L+ E GC +   R++E +   F TL+I LPS   GG+L V+ P
Sbjct:  132 IADKLGCPEMPLELHLYKMLMYESGCHFVRHRDTEKEDRMFATLVIQLPSVHQGGELVVYQP 193
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BLAST of mRNA_H-paniculata_contig19459.4921.1 vs. uniprot
Match: A0A7S2Q299_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q299_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.820e-7
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 VQQKLGCE-EWNVEAHLNELLLCEEGCFYSEGRESE--DPMAFGTLMINLPSEVDGGQLTVFDP 183
            V   LG + E+ +EA L +LLL EEGCF++  R++E  D M F TL++ LPSE +G +L+V+ P
Sbjct:  127 VAHDLGTDAEYKIEASLYKLLLYEEGCFFARHRDNERLDGM-FATLVLELPSEYEGAELSVWSP 189
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BLAST of mRNA_H-paniculata_contig19459.4921.1 vs. uniprot
Match: A0A1Y2HSL0_9FUNG (Fe2OG dioxygenase domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HSL0_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 5.270e-7
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    1 VQQKLGCEEWNVEAHLNELLLCEEGCFYSEGRESE-DPMAFGTLMINLPSEVDGGQLTVFDP 183
            +  KLGC    +E HL ++LL E GC +   R++E +   F TL+I LPS   GG+L V+ P
Sbjct:  132 IADKLGCPAMPLELHLYKMLLYESGCHFVRHRDTEKEDRMFATLVIQLPSVHQGGELVVYQP 193
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BLAST of mRNA_H-paniculata_contig19459.4921.1 vs. uniprot
Match: A0A1Y2HY87_9FUNG (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HY87_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 2.640e-6
Identity = 25/62 (40.32%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    1 VQQKLGCEEWNVEAHLNELLLCEEGCFYSEGRESE-DPMAFGTLMINLPSEVDGGQLTVFDP 183
            V  +LGC +  +E H  +LLL   GC +   R++E +   F TL+I LPS   GG+L V+ P
Sbjct:   88 VATRLGCPDMPLECHFYKLLLYGPGCHFMRHRDTEKEDRMFATLVIQLPSAHQGGELVVYQP 149
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BLAST of mRNA_H-paniculata_contig19459.4921.1 vs. uniprot
Match: A0A6N2D3T3_9BACT (2OG-Fe(II) oxygenase n=1 Tax=Saprospirales bacterium TaxID=2026790 RepID=A0A6N2D3T3_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 4.700e-6
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 VQQKLGCEEWNVEAHLNELLLCEEGCFYSEGRESEDPMA-FGTLMINLPSEVDGGQLTV 174
            V+++LG E + VEAH  +LL+ E+G F+   +++E     FG+L++NLPS  +GG+L +
Sbjct:  104 VKKELGIENYVVEAHFYKLLVYEKGDFFLPHKDTEKESGMFGSLVVNLPSNYEGGELII 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19459.4921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FPL6_ECTSI1.990e-1561.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Y2HAB9_9FUNG1.490e-741.94Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2Q299_9STRA3.820e-746.88Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1Y2HSL0_9FUNG5.270e-741.94Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A1Y2HY87_9FUNG2.640e-640.32Fe2OG dioxygenase domain-containing protein (Fragm... [more]
A0A6N2D3T3_9BACT4.700e-640.682OG-Fe(II) oxygenase n=1 Tax=Saprospirales bacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19459contigH-paniculata_contig19459:2184..2892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size185
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929478.4775238-CDS-H-paniculata_contig19459:2183..22801622929478.4775238-CDS-H-paniculata_contig19459:2183..2280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19459 2184..2280 -
1691480879.159095-CDS-H-paniculata_contig19459:2183..22801691480879.159095-CDS-H-paniculata_contig19459:2183..2280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19459 2184..2280 -
1622929478.4879723-CDS-H-paniculata_contig19459:2806..28921622929478.4879723-CDS-H-paniculata_contig19459:2806..2892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19459 2807..2892 -
1691480879.1734107-CDS-H-paniculata_contig19459:2806..28921691480879.1734107-CDS-H-paniculata_contig19459:2806..2892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19459 2807..2892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19459.4921.1prot_H-paniculata_contig19459.4921.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19459 2184..2892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19459.4921.1

>prot_H-paniculata_contig19459.4921.1 ID=prot_H-paniculata_contig19459.4921.1|Name=mRNA_H-paniculata_contig19459.4921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
VQQKLGCEEWNVEAHLNELLLCEEGCFYSEGRESEDPMAFGTLMINLPSE
VDGGQLTVFDP
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mRNA from alignment at H-paniculata_contig19459:2184..2892-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19459.4921.1 ID=mRNA_H-paniculata_contig19459.4921.1|Name=mRNA_H-paniculata_contig19459.4921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=709bp|location=Sequence derived from alignment at H-paniculata_contig19459:2184..2892- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCAGCAGAAGCTCGGGTGCGAGGAATGGAATGTGGAGGCTCATTTGAA
CGAGCTGCTCCTCTGCGAAGAAGGGTGTTTCTATAGGTAAGCATGTAACC
CAAAGCAAGAACACACCGTGTTCGTGTTCTCACTCGCTAATTTCGCGCGA
AAACAACCGCGACTAAGAAATGACGCGGCGGAAGAAGTAGAAGAGATGTA
ACATTGCACCGCCCGTTTTACATGCCAGTGACAAAACGTGACAGGGCCCA
TCGCTGGTCGGCTGGAAGTTGGTGGACACGATCGGAAAGCAGCAACTGAG
TGGCAAAATCAGTTTTCTTTCGGCAGAATCCGATATCCTAAATATTCGCT
AAAACAGGACAGAATCAACCGCGAATCGGTTCGGAACCGTACCACGAAGT
TATTCCGGCCCCCTTGAGGTGTGTAAGAGCCAAGCGTAACTAACACCTGT
CATGTTACAAACTTTGGAAGAGATCGACACATTCCGTTGGCAGTGGTAAA
TAGCGGGGAAGAGCAGCGCAAGAAATAGTTTCAAAGCTAGTTTCGTATTT
TCATTGCTCTGGTCTGGTGCCCGGGTTACTGAAATAATAACAAACATGAT
GATATCTTGCAGCGAAGGAAGAGAGAGCGAGGATCCCATGGCATTCGGGA
CGCTGATGATCAATCTCCCTTCCGAGGTAGATGGGGGGCAGCTGACCGTG
TTCGACCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig19459:2184..2892-

>mRNA_H-paniculata_contig19459.4921.1 ID=mRNA_H-paniculata_contig19459.4921.1|Name=mRNA_H-paniculata_contig19459.4921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig19459:2184..2892- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCAGCAGAAGCTCGGGTGCGAGGAATGGAATGTGGAGGCTCATTTGAA
CGAGCTGCTCCTCTGCGAAGAAGGGTGTTTCTATAGGTGCAGCAGAAGCT
CGGGTGCGAGGAATGGAATGTGGAGGCTCATTTGAACGAGCTGCTCCTCT
GCGAAGAAGGGTGTTTCTATAGCGAAGGAAGAGAGAGCGAGGATCCCATG
GCATTCGGGACGCTGATGATCAATCTCCCTTCCGAGGTAGATGGGGGGCA
GCTGACCGTGTTCGACCCTCGAAGGAAGAGAGAGCGAGGATCCCATGGCA
TTCGGGACGCTGATGATCAATCTCCCTTCCGAGGTAGATGGGGGGCAGCT
GACCGTGTTCGACCCT
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