mRNA_H-paniculata_contig1945.4919.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1945.4919.1
Unique NamemRNA_H-paniculata_contig1945.4919.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1945.4919.1 vs. uniprot
Match: UPI001CF1270B (uncharacterized protein LOC114950617 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1270B)

HSP 1 Score: 127 bits (320), Expect = 9.970e-32
Identity = 84/251 (33.47%), Postives = 129/251 (51.39%), Query Frame = 1
Query:    1 MGTPSAPILANITLAISERQLLTKHP-QIYLFRRYIDDIFCIVKNTELETHQIL--ASLYQELNLKLTFDMAQDRIEFLDLIIHKGIRWKNNGRLDLHTHQKKLNLYSYLPYRSAHPRHCKTGFIIGELLRYLITNTDGDSFRKMKDKFFYRLVRRGYPQIFLIPLFSKINFTQRNDKLLKKPTGKPLTSIVFSPEYHPIL-EIPKVKMELIQLLVDQPVGVSSVISRHLPPLVAFKKARTLGSHLVRAAL 741
            MGT  A   ANI +A  E+ +++K   +  +++RYIDD+FC+    E    + +  A+ Y +  +K T +++   I FLD  ++KG R+  +  LD+ TH K+   + Y  + S HP   K GFI GE LR L TN+   +F K    F  RL  RGYP  FL     ++NF  R   L  K        + F  +YHP L  +  + M    L+ +QP  +  V     PP+++++K ++L   LVRA L
Sbjct:   66 MGTKMAVAFANIFMAKIEKGIISKSIIKPLVWKRYIDDVFCLWDTNEDNIKEFVTRANHYHD-TIKFTAEISDSEIAFLDTKVYKGERFNRDSTLDVQTHYKQTETFQYTNFYSCHPPGVKKGFIKGEALRLLRTNSSHSTFNKNMQSFKKRLKNRGYPNEFLEKHLFEVNFKDRKRSLGNKDKSTKKKILPFITQYHPALPNVKNIHMGKWHLIQNQPY-LKEVFQE--PPILSYRKGKSLKDTLVRAKL 312          
BLAST of mRNA_H-paniculata_contig1945.4919.1 vs. uniprot
Match: UPI00109BD10C (uncharacterized protein LOC110237361 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BD10C)

HSP 1 Score: 122 bits (306), Expect = 3.200e-29
Identity = 81/249 (32.53%), Postives = 129/249 (51.81%), Query Frame = 1
Query:    1 MGTPSAPILANITLAISERQLLTKHPQ-IYLFRRYIDDIFCIVKNTELETHQILASLYQELN-LKLTFDMAQDRIEFLDLIIHKGIRWKNNGRLDLHTHQKKLNLYSYLPYRSAHPRHCKTGFIIGELLRYLITNTDGDSFRKMKDKFFYRLVRRGYPQIFLIPLFSKINFTQRNDKLLKKPTGKPLTSIVFSPEYHPILEIPKVKMELIQLLVDQPVGVSSVISRHLPPL---VAFKKARTLGSHLVR 732
            MGTP A   AN  +   E+ L+++    + L++R+IDDIFCI K    +    L+ L    + +KLT  + +++I FLDL+++K     N+ RL   T QK LN Y Y+P+ S HP   K  FI GEL+RY   ++  ++F + + KF+ RL  RGYP  FL+P+F ++ ++ R+  L +K   +    +VF   ++                      +  V  +HLP L   V++K   TL  HL +
Sbjct:  142 MGTPFAVTAANAFMYYLEKDLVSQFSNHLVLYKRFIDDIFCIWKGPRDKLLDFLSCLNSRNDRIKLTHVIEENKISFLDLLLYKD---SNSNRLHFSTFQKPLNKYLYIPFESFHPGSNKKAFIRGELMRYTRNSSTFEAFSETRAKFWKRLRLRGYPVSFLLPIFREVKYSNRSKWLSRKVKTRVDRMVVFKSTFN-----------------CSHANIKRVTEKHLPDLKCIVSYKSTTTLA-HLCK 369          
BLAST of mRNA_H-paniculata_contig1945.4919.1 vs. uniprot
Match: UPI001CF1F6B0 (uncharacterized protein LOC122959501 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1F6B0)

HSP 1 Score: 123 bits (308), Expect = 7.540e-29
Identity = 88/253 (34.78%), Postives = 138/253 (54.55%), Query Frame = 1
Query:    1 MGTPSAPILANITLAISERQLLTKHP-QIYLFRRYIDDIFCIVKNTELETHQIL--ASLYQELNLKLTFDMAQDRIEFLDLIIHKGIRWKNNGRLDLHTHQKKLNLYSYLPYRSAHPRHCKTGFIIGELLRYLITNTDGDSFRKMKDKFFYRLVRRGYPQIFLIPLFSKINFTQRNDKLLKKP-TGKPLTSIVFSPEYHPILEIPKVKMELIQL--LVDQPVGVSSVISRHLPPLVAFKKARTLGSHLVRAAL 741
            MGT  A   A I +A  E+QLL   P +  +++R+IDDIF +    E E +  +  A+ +    +K T +M+ ++I FLD  + KG R+  +  LD+ TH K    + Y  + S HP   K GF+ GE LR L TN+  +SF   K +F  RL+ RGYP+ F   + ++I F+ RN  L  KP T K +  I F   ++P    P +K  LI+   L+     ++ +     PP+VA++K ++L ++LVRA +
Sbjct:  235 MGTKMAVAFAVIFMAHIEKQLLVNSPHKPLIWKRFIDDIFSVWTLPEAEINNFVEFANSFHT-TIKFTHEMSSEKIVFLDTEVFKGPRFITDKILDVQTHFKPTETFQYTHFSSCHPLSVKKGFVKGEALRLLRTNSVKESFEFKKLQFLTRLLERGYPKSFAEDILTEIKFSMRNTALQNKPKTSKKI--IPFVTTFNPAT--PNLKKILIKHWHLIAGNHNLAQIFKN--PPMVAYRKDKSLKNYLVRARI 480          
BLAST of mRNA_H-paniculata_contig1945.4919.1 vs. uniprot
Match: UPI001CF217C3 (uncharacterized protein LOC122958531 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF217C3)

HSP 1 Score: 123 bits (308), Expect = 1.200e-28
Identity = 88/253 (34.78%), Postives = 138/253 (54.55%), Query Frame = 1
Query:    1 MGTPSAPILANITLAISERQLLTKHP-QIYLFRRYIDDIFCIVKNTELETHQIL--ASLYQELNLKLTFDMAQDRIEFLDLIIHKGIRWKNNGRLDLHTHQKKLNLYSYLPYRSAHPRHCKTGFIIGELLRYLITNTDGDSFRKMKDKFFYRLVRRGYPQIFLIPLFSKINFTQRNDKLLKKP-TGKPLTSIVFSPEYHPILEIPKVKMELIQL--LVDQPVGVSSVISRHLPPLVAFKKARTLGSHLVRAAL 741
            MGT  A   A I +A  E+QLL   P +  +++R+IDDIF +    E E +  +  A+ +    +K T +M+ ++I FLD  + KG R+  +  LD+ TH K    + Y  + S HP   K GF+ GE LR L TN+  +SF   K +F  RL+ RGYP+ F   + ++I F+ RN  L  KP T K +  I F   ++P    P +K  LI+   L+     ++ +     PP+VA++K ++L ++LVRA +
Sbjct:  289 MGTKMAVAFAVIFMAHIEKQLLVNSPHKPLIWKRFIDDIFSVWTLPEAEINNFVEFANSFHT-TIKFTHEMSSEKIVFLDTEVFKGPRFITDKILDVQTHFKPTETFQYTHFSSCHPLSVKKGFVKGEALRLLRTNSVKESFEFKKLQFLTRLLERGYPKSFAEDILTEIKFSMRNTALQNKPKTSKKI--IPFVTTFNPAT--PNLKKILIKHWHLIAGNHNLAQIFKN--PPMVAYRKDKSLKNYLVRARI 534          
BLAST of mRNA_H-paniculata_contig1945.4919.1 vs. uniprot
Match: UPI001CF34F53 (uncharacterized protein LOC114965134 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF34F53)

HSP 1 Score: 123 bits (308), Expect = 2.630e-28
Identity = 87/253 (34.39%), Postives = 138/253 (54.55%), Query Frame = 1
Query:    1 MGTPSAPILANITLAISERQLLTKHP-QIYLFRRYIDDIFCI--VKNTELETHQILASLYQELNLKLTFDMAQDRIEFLDLIIHKGIRWKNNGRLDLHTHQKKLNLYSYLPYRSAHPRHCKTGFIIGELLRYLITNTDGDSFRKMKDKFFYRLVRRGYPQIFLIPLFSKINFTQRNDKLLKKP-TGKPLTSIVFSPEYHPILEIPKVKMELIQL--LVDQPVGVSSVISRHLPPLVAFKKARTLGSHLVRAAL 741
            MGT  A   A I +A  E+QLL   P +  +++R+IDDIF +  +  T++      A+ +    +K T +M+ ++I FLD  + KG R+  +  LD+ TH K    + Y  + S HP   K GF+ GE LR L TN+  +SF   K +F  RL+ RGYP+ F   + ++I F+ RN  L  KP T K +  I F   ++P    P +K  LI+   L+     ++ +     PP+VA++K ++L ++LVRA +
Sbjct:  627 MGTKMAVAFAVIFMAHIEKQLLVNSPHKPLIWKRFIDDIFSVWTLPETKINNFVEFANSFHT-TIKFTHEMSSEKIVFLDTEVFKGPRFITDKILDVQTHFKPTETFQYTHFSSCHPLSVKKGFVKGEALRLLRTNSVKESFEFKKLQFLTRLLERGYPKSFAEDILTEIKFSMRNTALQNKPKTSKKI--IPFVTTFNPAT--PNLKKILIKHWHLIAGNHNLAQIFKN--PPMVAYRKDKSLKNYLVRARI 872          
BLAST of mRNA_H-paniculata_contig1945.4919.1 vs. uniprot
Match: UPI001CF381DD (uncharacterized protein LOC122952170 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF381DD)

HSP 1 Score: 122 bits (306), Expect = 4.550e-28
Identity = 82/252 (32.54%), Postives = 128/252 (50.79%), Query Frame = 1
Query:    1 MGTPSAPILANITLAISERQLL--TKHPQIYLFRRYIDDIFCIVKNTELETHQILASLYQEL-NLKLTFDMAQDRIEFLDLIIHKGIRWKNNGRLDLHTHQKKLNLYSYLPYRSAHPRHCKTGFIIGELLRYLITNTDGDSFRKMKDKFFYRLVRRGYPQIFLIPLFSKINFTQRNDKLLKKPTGKPLTSIVFSPEYHPILEIPKVKMELIQ--LLVDQPVGVSSVISRHLPPLVAFKKARTLGSHLVRAAL 741
            MGT  A   ANI +A  E ++L  T+H  I  F+R+IDD+FC+         Q +         +K T ++++  I FLD  ++KG+R+     LD+ TH K    + Y  + S HP   K GFI GE LR L TN+   +F +   KF   L+ RGYP+  +    S++ F  RN  L +KP       + F  +Y P   +P +K  L++   L++Q   +  +     PP++++ + R+L   LVRA L
Sbjct:  506 MGTKMAVAFANIFMAKIETEILSKTRHKPI-AFKRFIDDVFCLWNINREHIDQFIEQCNNHHPTIKFTAEISEQEITFLDTNVYKGVRFNTVSILDVKTHFKPTETFQYTEFTSCHPPGVKKGFIKGEALRLLRTNSSRFNFEENITKFKRNLIARGYPERLIHETLSEVKFENRNAALTQKPKENKRI-LPFVTQYQP--SVPNLKQILMKNWYLIEQQPLLKEIFKE--PPIISYTRGRSLKDILVRAKL 751          
BLAST of mRNA_H-paniculata_contig1945.4919.1 vs. uniprot
Match: UPI001CF247D0 (uncharacterized protein LOC114948263 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF247D0)

HSP 1 Score: 117 bits (294), Expect = 1.010e-26
Identity = 85/256 (33.20%), Postives = 137/256 (53.52%), Query Frame = 1
Query:    1 MGTPSAPILANITLAISERQLLTK---HPQIYLFRRYIDDIFCI--VKNTELETHQILASLYQELNLKLTFDMAQDRIEFLDLIIHKGIRWKNNGRLDLHTHQKKLNLYSYLPYRSAHPRHCKTGFIIGELLRYLITNTDGDSFRKMKDKFFYRLVRRGYPQIFLIPLFSKINFTQRNDKLL-KKPTGKPLTSIVFSPEYHPILEIPKVKMELI---QLLVDQPVGVSSVISRHLPPLVAFKKARTLGSHLVRAAL 741
            MGT +A   ANI +A  E  +L+K    P ++  +RYIDD+F +  +   ++ET    A+L+    +K T +++     FLD  ++KG R+++   LD+ TH K    + Y  + S HP   K GF+ GE LR L TN+  D+F +   +F   L  RGYP+  +  L S+I FT+R   L  K  T K +  + F  +Y P   +  +K  L+    L+ +QP+ +  +     PP++++KK ++L   LVRA L
Sbjct:  289 MGTKTAVSFANIFMAKIETDILSKAVSKPTVW--KRYIDDVFSLWDISKPDIETFIEQANLHHP-TIKFTAEISDTETVFLDTTVYKGTRFRDQSILDVKTHFKPTETFQYTHFTSCHPPSMKNGFVKGEALRILRTNSSKDTFEENISQFKRHLRDRGYPRNLVEKLLSEIKFTRRCSVLKGKNKTQKDI--LPFVTQYRP--SVSNLKQALLTKWHLIQNQPL-LRQIFKE--PPIISYKKGKSLRDLLVRAKL 534          
BLAST of mRNA_H-paniculata_contig1945.4919.1 vs. uniprot
Match: UPI00077B20D0 (uncharacterized protein LOC107335945 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B20D0)

HSP 1 Score: 113 bits (282), Expect = 3.550e-26
Identity = 79/254 (31.10%), Postives = 128/254 (50.39%), Query Frame = 1
Query:    1 MGTPSAPILANITLAIS--ERQLL--TKHPQIYLFRRYIDDIFCIVKNTELETHQILASLYQEL-NLKLTFDMAQDRIEFLDLIIHKGIRWKNNGRLDLHTHQKKLNLYSYLPYRSAHPRHCKTGFIIGELLRYLITNTDGDSFRKMKDKFFYRLVRRGYPQIFLIPLFSKINFTQRNDKLLKKPTGKPLTSIVFSPEYHPILEIPKVKMELIQ--LLVDQPVGVSSVISRHLPPLVAFKKARTLGSHLVRAAL 741
            MGT  A   ANI + ++  E ++L  T++  I  F+R+IDD+FC+         Q +         +K T ++++  I FLD  ++KG+R+     LD+ TH K    + Y  + S HP   K GFI GE LR L TN+   +F +   KF   L+ RGYP+  +    S++ F  R   L +KP       + F  +Y P   +P +K  L++   L++Q   +  +     PP++++ + R+L   LVRA L
Sbjct:   66 MGTKMAVAFANIFIFMAKIETEILSETRYKPI-AFKRFIDDVFCLWNINREHIDQFIEQCNNHHPTIKFTAEISEQEITFLDTNVYKGVRFNTVSILDVKTHFKPTETFQYTEFTSCHPPGVKKGFIKGEALRLLRTNSSRFNFEENITKFKRNLIARGYPERLIHETLSEVKFENRTAALTQKPKENKRI-LPFVTQYQP--SVPNLKQILMKNWYLIEQQPLLKEIFKE--PPIISYTRGRSLKDILVRAKL 313          
BLAST of mRNA_H-paniculata_contig1945.4919.1 vs. uniprot
Match: UPI001CF1D19E (uncharacterized protein LOC122948421 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1D19E)

HSP 1 Score: 109 bits (273), Expect = 3.180e-25
Identity = 78/252 (30.95%), Postives = 127/252 (50.40%), Query Frame = 1
Query:    1 MGTPSAPILANITLAISERQLLTKHPQIYL-FRRYIDDIFCIVKNTELETHQILASLYQE-LNLKLTFDMAQDRIEFLDLIIHKGIRWKNNGRLDLHTHQKKLNLYSYLPYRSAHPRHCKTGFIIGELLRYLITNTDGDSFRKMKDKFFYRLVRRGYPQIFLIPLFSKINFTQRNDKLLK--KPTGKPLTSIVFSPEYHP-ILEIPKVKMELIQLLVDQPVGVSSVISRHLPPLVAFKKARTLGSHLVRAAL 741
            MGT  A   ANI ++  E  +L++     L ++RYIDD+F +      E  + +    +    +K T +++     FLD  ++KG R+K    LD+ +H K    + Y  Y S HP     GFI GE LR L TN+   +F +    F  RL  RGYP+  +  + S++ FT+R   L +  K   KPL    F  +YHP + ++ ++ M     + +QP+ +  +     PP ++++K ++L   LVRA L
Sbjct:   26 MGTKMAVAFANIFMSAVETAILSQSITKPLEWKRYIDDVFSLWDTNREEIGKFIEHANRHHATIKFTAEISDKETTFLDTCVYKGERFKKENILDVRSHFKPTETFQYTHYSSCHPPGVSKGFIKGEALRLLRTNSSKTTFEENIRNFRVRLRMRGYPRHLVDHILSEVKFTERESALQQRQKTQNKPLP---FVTQYHPSVPDLKRIFMGKWHWIENQPL-LREIYKE--PPFISYRKGKSLKDILVRAKL 271          
BLAST of mRNA_H-paniculata_contig1945.4919.1 vs. uniprot
Match: UPI001CF2B6D2 (uncharacterized protein LOC122963392 n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF2B6D2)

HSP 1 Score: 110 bits (274), Expect = 5.560e-24
Identity = 78/252 (30.95%), Postives = 127/252 (50.40%), Query Frame = 1
Query:    1 MGTPSAPILANITLAISERQLLTKHPQIYL-FRRYIDDIFCIVKNTELETHQILASLYQE-LNLKLTFDMAQDRIEFLDLIIHKGIRWKNNGRLDLHTHQKKLNLYSYLPYRSAHPRHCKTGFIIGELLRYLITNTDGDSFRKMKDKFFYRLVRRGYPQIFLIPLFSKINFTQRNDKLLK--KPTGKPLTSIVFSPEYHP-ILEIPKVKMELIQLLVDQPVGVSSVISRHLPPLVAFKKARTLGSHLVRAAL 741
            MGT  A   ANI ++  E  +L++     L ++RYIDD+F +      E  + +    +    +K T +++     FLD  ++KG R+K    LD+ +H K    + Y  Y S HP     GFI GE LR L TN+   +F +    F  RL  RGYP+  +  + S++ FT+R   L +  K   KPL    F  +YHP + ++ ++ M     + +QP+ +  +     PP ++++K ++L   LVRA L
Sbjct:  289 MGTKMAVAFANIFMSAVETAILSQSITKPLEWKRYIDDVFSLWDTNREEIDKFIEHANRHHATIKFTAEISDKETTFLDTCVYKGERFKKENILDVRSHFKPTETFQYTHYSSCHPPGVSKGFIKGEALRLLRTNSSKTTFEENIRNFRVRLRMRGYPRHLVDHILSEVKFTERESALQQRQKTQNKPLP---FVTQYHPSVPDLKRIFMGKWHWIENQPL-LREIYKE--PPFISYRKGKSLKDILVRAKL 534          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1945.4919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CF1270B9.970e-3233.47uncharacterized protein LOC114950617 n=1 Tax=Acrop... [more]
UPI00109BD10C3.200e-2932.53uncharacterized protein LOC110237361 n=1 Tax=Exaip... [more]
UPI001CF1F6B07.540e-2934.78uncharacterized protein LOC122959501 n=2 Tax=Acrop... [more]
UPI001CF217C31.200e-2834.78uncharacterized protein LOC122958531 n=1 Tax=Acrop... [more]
UPI001CF34F532.630e-2834.39uncharacterized protein LOC114965134 n=1 Tax=Acrop... [more]
UPI001CF381DD4.550e-2832.54uncharacterized protein LOC122952170 n=1 Tax=Acrop... [more]
UPI001CF247D01.010e-2633.20uncharacterized protein LOC114948263 n=1 Tax=Acrop... [more]
UPI00077B20D03.550e-2631.10uncharacterized protein LOC107335945 n=1 Tax=Acrop... [more]
UPI001CF1D19E3.180e-2530.95uncharacterized protein LOC122948421 n=1 Tax=Acrop... [more]
UPI001CF2B6D25.560e-2430.95uncharacterized protein LOC122963392 n=3 Tax=Acrop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1945contigH-paniculata_contig1945:490..1233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score105.5
Seed ortholog evalue3.6e-20
Seed eggNOG ortholog400682.PAC_15708465
Hectar predicted targeting categoryother localisation
EggNOG OGs29YJV@1,2RXU5@2759,3A0FB@33154,3BPYT@33208
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size744
Cds size744
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929478.3660386-CDS-H-paniculata_contig1945:489..12331622929478.3660386-CDS-H-paniculata_contig1945:489..1233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1945 490..1233 +
1691480879.1310499-CDS-H-paniculata_contig1945:489..12331691480879.1310499-CDS-H-paniculata_contig1945:489..1233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1945 490..1233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1945.4919.1prot_H-paniculata_contig1945.4919.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1945 490..1233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1945.4919.1

>prot_H-paniculata_contig1945.4919.1 ID=prot_H-paniculata_contig1945.4919.1|Name=mRNA_H-paniculata_contig1945.4919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp
MGTPSAPILANITLAISERQLLTKHPQIYLFRRYIDDIFCIVKNTELETH
QILASLYQELNLKLTFDMAQDRIEFLDLIIHKGIRWKNNGRLDLHTHQKK
LNLYSYLPYRSAHPRHCKTGFIIGELLRYLITNTDGDSFRKMKDKFFYRL
VRRGYPQIFLIPLFSKINFTQRNDKLLKKPTGKPLTSIVFSPEYHPILEI
PKVKMELIQLLVDQPVGVSSVISRHLPPLVAFKKARTLGSHLVRAAL*
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mRNA from alignment at H-paniculata_contig1945:490..1233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1945.4919.1 ID=mRNA_H-paniculata_contig1945.4919.1|Name=mRNA_H-paniculata_contig1945.4919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=744bp|location=Sequence derived from alignment at H-paniculata_contig1945:490..1233+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAACCCCCAGTGCCCCCATCCTGGCTAACATCACATTAGCCATTAG CGAACGACAACTACTTACAAAACACCCACAAATCTATCTCTTCAGAAGGT ATATTGATGACATCTTCTGTATAGTTAAAAATACGGAATTAGAAACACAC CAAATTCTAGCATCACTATACCAAGAACTCAACCTGAAACTAACATTCGA CATGGCCCAAGACAGGATCGAGTTCCTTGATTTGATAATCCACAAAGGTA TCAGATGGAAGAATAATGGACGATTGGACTTACACACCCATCAGAAAAAG CTCAACCTTTATTCATATCTTCCTTACCGCTCAGCACATCCTAGACACTG CAAAACAGGGTTCATCATAGGAGAACTGCTGAGGTACCTTATAACCAACA CAGATGGAGACTCCTTTAGAAAAATGAAGGATAAGTTCTTCTACAGACTA GTTAGGAGAGGATATCCACAAATTTTCCTCATCCCACTATTCAGTAAAAT CAATTTCACACAGAGAAATGATAAACTGTTAAAAAAACCCACAGGTAAAC CGCTCACTAGCATAGTATTTTCCCCGGAATATCATCCTATCTTGGAGATA CCCAAAGTAAAAATGGAACTTATTCAACTGCTAGTGGACCAACCCGTAGG CGTTAGTAGTGTTATCAGCCGCCACCTCCCCCCATTGGTAGCGTTTAAGA AAGCTCGCACGTTAGGCTCACACCTAGTAAGAGCAGCTCTCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1945:490..1233+

>mRNA_H-paniculata_contig1945.4919.1 ID=mRNA_H-paniculata_contig1945.4919.1|Name=mRNA_H-paniculata_contig1945.4919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig1945:490..1233+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAACCCCCAGTGCCCCCATCCTGGCTAACATCACATTAGCCATTAG
CGAACGACAACTACTTACAAAACACCCACAAATCTATCTCTTCAGAAGGT
ATATTGATGACATCTTCTGTATAGTTAAAAATACGGAATTAGAAACACAC
CAAATTCTAGCATCACTATACCAAGAACTCAACCTGAAACTAACATTCGA
CATGGCCCAAGACAGGATCGAGTTCCTTGATTTGATAATCCACAAAGGTA
TCAGATGGAAGAATAATGGACGATTGGACTTACACACCCATCAGAAAAAG
CTCAACCTTTATTCATATCTTCCTTACCGCTCAGCACATCCTAGACACTG
CAAAACAGGGTTCATCATAGGAGAACTGCTGAGGTACCTTATAACCAACA
CAGATGGAGACTCCTTTAGAAAAATGAAGGATAAGTTCTTCTACAGACTA
GTTAGGAGAGGATATCCACAAATTTTCCTCATCCCACTATTCAGTAAAAT
CAATTTCACACAGAGAAATGATAAACTGTTAAAAAAACCCACAGGTAAAC
CGCTCACTAGCATAGTATTTTCCCCGGAATATCATCCTATCTTGGAGATA
CCCAAAGTAAAAATGGAACTTATTCAACTGCTAGTGGACCAACCCGTAGG
CGTTAGTAGTGTTATCAGCCGCCACCTCCCCCCATTGGTAGCGTTTAAGA
AAGCTCGCACGTTAGGCTCACACCTAGTAAGAGCAGCTCTCTAAATGGGA
ACCCCCAGTGCCCCCATCCTGGCTAACATCACATTAGCCATTAGCGAACG
ACAACTACTTACAAAACACCCACAAATCTATCTCTTCAGAAGGTATATTG
ATGACATCTTCTGTATAGTTAAAAATACGGAATTAGAAACACACCAAATT
CTAGCATCACTATACCAAGAACTCAACCTGAAACTAACATTCGACATGGC
CCAAGACAGGATCGAGTTCCTTGATTTGATAATCCACAAAGGTATCAGAT
GGAAGAATAATGGACGATTGGACTTACACACCCATCAGAAAAAGCTCAAC
CTTTATTCATATCTTCCTTACCGCTCAGCACATCCTAGACACTGCAAAAC
AGGGTTCATCATAGGAGAACTGCTGAGGTACCTTATAACCAACACAGATG
GAGACTCCTTTAGAAAAATGAAGGATAAGTTCTTCTACAGACTAGTTAGG
AGAGGATATCCACAAATTTTCCTCATCCCACTATTCAGTAAAATCAATTT
CACACAGAGAAATGATAAACTGTTAAAAAAACCCACAGGTAAACCGCTCA
CTAGCATAGTATTTTCCCCGGAATATCATCCTATCTTGGAGATACCCAAA
GTAAAAATGGAACTTATTCAACTGCTAGTGGACCAACCCGTAGGCGTTAG
TAGTGTTATCAGCCGCCACCTCCCCCCATTGGTAGCGTTTAAGAAAGCTC
GCACGTTAGGCTCACACCTAGTAAGAGCAGCTCTCTAA
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