mRNA_H-paniculata_contig19443.4918.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig19443.4918.1 vs. uniprot
Match: A0A6H5KXM9_9PHAE (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXM9_9PHAE) HSP 1 Score: 232 bits (592), Expect = 1.060e-70 Identity = 115/138 (83.33%), Postives = 127/138 (92.03%), Query Frame = 1
Query: 34 VDTVDENENETAGRGMISNREIKEGDELFALPINLLLTKDAAQKEFGADVITEELSEYIAIALLLVAERAKGEKSFWKPYLDVLPTVEDVYPTYLWTEEDIALLNGSPVIATTDSMRRKLELEYATVEKDLLDKFPEV 447
VDTVDENENETAGRGMI+NREIKEGDELF LPI+LLLTKDAA+KEFGADVITE+LSEYIAIALL V E+AKG+ SFW Y+ VLPTVE+VYPTYLW EED+ALL GSPVIA T+SMRRKLE+EYATVE DLLDKFPE+
Sbjct: 211 VDTVDENENETAGRGMIANREIKEGDELFTLPIDLLLTKDAAKKEFGADVITEDLSEYIAIALLAVHEKAKGKDSFWSSYIGVLPTVEEVYPTYLWAEEDLALLEGSPVIAATESMRRKLEVEYATVENDLLDKFPEI 348
BLAST of mRNA_H-paniculata_contig19443.4918.1 vs. uniprot
Match: A0A836CJC2_9STRA (Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC2_9STRA) HSP 1 Score: 185 bits (469), Expect = 2.960e-53 Identity = 88/134 (65.67%), Postives = 115/134 (85.82%), Query Frame = 1
Query: 34 VDTVDENENETAGRGMISNREIKEGDELFALPINLLLTKDAAQKEFGADVITEELSEYIAIALLLVAERAKGEKSFWKPYLDVLPTVEDVYPTYLWTEEDIALLNGSPVIATTDSMRRKLELEYATVEKDLLDK 435
VDTVDE ENE AGRGM++NREIKEGDELF +P++LLLTK+ A+ EFG DVIT+++SEYIAIALLL+ ERAKG+ SFW PY++VLPT+++V PT+ W EE+++LL GSPVI +T+SM RKLE EYA +++ +L K
Sbjct: 133 VDTVDEAENERAGRGMVANREIKEGDELFHIPLDLLLTKERARTEFGHDVITDDMSEYIAIALLLMGERAKGKDSFWAPYINVLPTLDEVAPTWSWPEEELSLLEGSPVIRSTESMARKLEAEYAALQQGILTK 266
BLAST of mRNA_H-paniculata_contig19443.4918.1 vs. uniprot
Match: A0A7S3UXM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXM7_HETAK) HSP 1 Score: 162 bits (409), Expect = 6.450e-45 Identity = 73/138 (52.90%), Postives = 107/138 (77.54%), Query Frame = 1
Query: 34 VDTVDENENETAGRGMISNREIKEGDELFALPINLLLTKDAAQKEFGADVITEELSEYIAIALLLVAERAKGEKSFWKPYLDVLPTVEDVYPTYLWTEEDIALLNGSPVIATTDSMRRKLELEYATVEKDLLDKFPEV 447
+DT DE + E +GRGM++ +IKEGDELF LP+ + L K AAQKEFG +I + LSEY AIA+LL+ ER+KG SFWKPY+DVLP++E+V PT +W+E+++A L GSP+++ T S+R KL+ E+ T+++D+ K P++
Sbjct: 73 IDTADELDQEPSGRGMLARYDIKEGDELFCLPLEITLNKKAAQKEFGKSIIHDGLSEYFAIAILLIKERSKGADSFWKPYIDVLPSLEEVNPTVVWSEDELAALEGSPLVSATLSLRLKLQKEFETLQQDVFSKHPDL 210
BLAST of mRNA_H-paniculata_contig19443.4918.1 vs. uniprot
Match: A0A0G4EI96_VITBC (SET domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EI96_VITBC) HSP 1 Score: 143 bits (360), Expect = 4.110e-37 Identity = 68/138 (49.28%), Postives = 99/138 (71.74%), Query Frame = 1
Query: 34 VDTVDENENETAGRGMISNREIKEGDELFALPINLLLTKDAAQKEFGADVITEELSEYIAIALLLVAERAKGEKSFWKPYLDVLPTVEDVYPTYLWTEEDIALLNGSPVIATTDSMRRKLELEYATVEKDLLDKFPEV 447
D +DEN E+AGRG+++ +++ +E+ ++P+ L TKDAA++ FG D++ + +SE+IAIALLL+ ERAKG+ SF+ PYLDVLPT+E+V PT++W EED+ LL GS T S+R KL EY V +L K PE+
Sbjct: 154 TDVMDENAGESAGRGLLAKKQLDVNEEVLSVPLRLCFTKDAARRVFGPDIVDDGMSEHIAIALLLIHERAKGDDSFFFPYLDVLPTIEEVNPTFVWPEEDVELLRGSQAFITATSLREKLLNEYDRVRSLVLTKKPEM 291
BLAST of mRNA_H-paniculata_contig19443.4918.1 vs. uniprot
Match: A0A7S0XQ84_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XQ84_9STRA) HSP 1 Score: 142 bits (357), Expect = 8.410e-37 Identity = 69/141 (48.94%), Postives = 101/141 (71.63%), Query Frame = 1
Query: 34 VDTVDENENETAGRGMISNREIKEGDELFALPINLLLTKDAAQKEFGADVITEELSEYIAIALLLVAER-AKGEKSFWKPYLDVLPTVEDVYPTYLWTEEDIALLNGSPVIATTDSMRRKLELEYATV---EKDLLDKFPE 444
+T DE NE++GRG+++ R+I +GD LF +P L LTK +A+K G DV++ E++EY+AIA L+ ER +GEKSFWKPY+DVLP E+V PT+ W ++D++ L+GSPVIA T S++ KL+ EY + E L+ K P+
Sbjct: 115 TETKDEITNESSGRGLLARRDINDGDNLFKIPTKLCLTKASARKALGKDVLSREINEYLAIACQLIHERYVEGEKSFWKPYIDVLPETEEVNPTFTWNDDDLSFLDGSPVIAATKSLQMKLQREYDALLGGEDGLIAKHPD 255
BLAST of mRNA_H-paniculata_contig19443.4918.1 vs. uniprot
Match: B5Y418_PHATC (Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y418_PHATC) HSP 1 Score: 141 bits (355), Expect = 1.600e-36 Identity = 70/141 (49.65%), Postives = 101/141 (71.63%), Query Frame = 1
Query: 34 VDTVDENENETAGRGMISNREIKEGDELFALPINLLLTKDAAQKEFGADVITEELSEYIAIALLLVAER-AKGEKSFWKPYLDVLPTVEDVYPTYLWTEEDIALLNGSPVIATTDSMRRKLELEYATV---EKDLLDKFPE 444
+T DE NE++GRG+++ R+I +GDEL +P+ L +TK AA+K G DV+ E++EY+A+A L+ ER +GE+S WKPYLDVLP +++V PT+ W +ED+A LNGSPVIA T S++ KL EY + E LL K+P+
Sbjct: 114 TETKDEITNESSGRGLLARRDINDGDELLRIPMALCMTKSAARKAVGKDVLPSEINEYLAMACHLIYERNVRGEESPWKPYLDVLPDIDEVNPTFTWPDEDLAFLNGSPVIAATKSLQMKLRREYDALLGGEDGLLAKYPD 254
BLAST of mRNA_H-paniculata_contig19443.4918.1 vs. uniprot
Match: A0A7S2JZ65_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZ65_9STRA) HSP 1 Score: 141 bits (355), Expect = 1.820e-36 Identity = 71/141 (50.35%), Postives = 97/141 (68.79%), Query Frame = 1
Query: 34 VDTVDENENETAGRGMISNREIKEGDELFALPINLLLTKDAAQKEFGADVITEELSEYIAIALLLVAER-AKGEKSFWKPYLDVLPTVEDVYPTYLWTEEDIALLNGSPVIATTDSMRRKLELEYATV---EKDLLDKFPE 444
V+TVDE NET GRG+++ R I +GDEL +P+ L LT ++A+ G DVIT ++EY+AIA L+ E GEKSFWKPY+DVLPTVE+V PT+ W +ED+ L GSPV+ T S++ KL EY + E L ++FP+
Sbjct: 128 VETVDETTNETTGRGLLARRNINDGDELLQIPMRLCLTLESARTALGKDVITNGMNEYLAIATQLIHETYVLGEKSFWKPYIDVLPTVEEVNPTFTWPDEDLDFLKGSPVVPATKSLQIKLRKEYDALLGGEGGLCERFPD 268
BLAST of mRNA_H-paniculata_contig19443.4918.1 vs. uniprot
Match: A0A448ZJ96_9STRA (SET domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJ96_9STRA) HSP 1 Score: 140 bits (354), Expect = 2.350e-36 Identity = 68/141 (48.23%), Postives = 100/141 (70.92%), Query Frame = 1
Query: 34 VDTVDENENETAGRGMISNREIKEGDELFALPINLLLTKDAAQKEFGADVITEELSEYIAIALLLVAER-AKGEKSFWKPYLDVLPTVEDVYPTYLWTEEDIALLNGSPVIATTDSMRRKLELEYATV---EKDLLDKFPE 444
+T DE NE++GRG+++ R+I +GD L +P+ L LTK +A+K G DV+ E++EY+AIA L+ ER GEKSFWKPY+DVLP E+V PT+ W+++D++ LNGSP+IA T S++ KL+ EY + E L+ K P+
Sbjct: 120 TETKDEITNESSGRGLLARRDINDGDSLLKVPLKLCLTKASARKALGKDVLPREINEYLAIACQLIHERYVLGEKSFWKPYIDVLPETEEVNPTFTWSDDDLSFLNGSPIIAATKSLQMKLQREYNDLLGGEDGLISKHPD 260
BLAST of mRNA_H-paniculata_contig19443.4918.1 vs. uniprot
Match: A0A1Z5JTW8_FISSO (SET domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTW8_FISSO) HSP 1 Score: 137 bits (346), Expect = 2.260e-35 Identity = 67/141 (47.52%), Postives = 99/141 (70.21%), Query Frame = 1
Query: 34 VDTVDENENETAGRGMISNREIKEGDELFALPINLLLTKDAAQKEFGADVITEELSEYIAIALLLVAER-AKGEKSFWKPYLDVLPTVEDVYPTYLWTEEDIALLNGSPVIATTDSMRRKLELEYATV---EKDLLDKFPE 444
DT DE NE++GRG+++ R+I +GDEL +P+ + +TK A+K G D + E++EY+AIA L+ E+ ++S+WKPYLDVLPTV +V PT+ W+E+D+A L GSPVIA T S++ KL+ EY + + L+ KFPE
Sbjct: 83 TDTKDEITNESSGRGLLARRDINDGDELLKIPMKMCMTKANARKALGKDALPSEINEYLAIACHLIFEKFVMADQSYWKPYLDVLPTVNEVSPTFTWSEDDLAFLEGSPVIAATKSLQMKLKREYDALLGGDNGLVAKFPE 223
BLAST of mRNA_H-paniculata_contig19443.4918.1 vs. uniprot
Match: A0A1E7FJ75_9STRA (Ribulose-1,5-bisphosphate caboxylase, small subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJ75_9STRA) HSP 1 Score: 135 bits (340), Expect = 2.270e-34 Identity = 65/140 (46.43%), Postives = 100/140 (71.43%), Query Frame = 1
Query: 34 VDTVDENENETAGRGMISNREIKEGDELFALPINLLLTKDAAQKEFGADVITEELSEYIAIALLLVAER-AKGEKSFWKPYLDVLPTVEDVYPTYLWTEEDIALLNGSPVIATTDSMRRKLELEYATV---EKDLLDKFP 441
+T DE NE++GRG+++ R+I +GD L +PI L LTK +A+ G DV+ E++EY+A+A L+ ER G+KSF+KPY+DVLP E+V PT+ W+++D++ LNGSPVIA T S++ KL+ EY ++ + L +K+P
Sbjct: 125 TETKDEITNESSGRGLLARRDINDGDNLLKVPIKLCLTKSSARTALGKDVLPSEINEYLAVACQLIHERYVLGDKSFFKPYIDVLPETEEVNPTFTWSDDDLSFLNGSPVIAATQSLQMKLQREYDSLLGGDDGLCNKYP 264 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19443.4918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19443.4918.1 >prot_H-paniculata_contig19443.4918.1 ID=prot_H-paniculata_contig19443.4918.1|Name=mRNA_H-paniculata_contig19443.4918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp MYASDGLGTDQVDTVDENENETAGRGMISNREIKEGDELFALPINLLLTKback to top mRNA from alignment at H-paniculata_contig19443:1595..3342+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig19443.4918.1 ID=mRNA_H-paniculata_contig19443.4918.1|Name=mRNA_H-paniculata_contig19443.4918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1748bp|location=Sequence derived from alignment at H-paniculata_contig19443:1595..3342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig19443:1595..3342+ >mRNA_H-paniculata_contig19443.4918.1 ID=mRNA_H-paniculata_contig19443.4918.1|Name=mRNA_H-paniculata_contig19443.4918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig19443:1595..3342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |