prot_H-paniculata_contig1944.4917.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1944.4917.1
Unique Nameprot_H-paniculata_contig1944.4917.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length208
Homology
BLAST of mRNA_H-paniculata_contig1944.4917.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.050e-37
Identity = 71/163 (43.56%), Postives = 104/163 (63.80%), Query Frame = 0
Query:   43 ASRGGLPLFWVGDFVLMARVRKTGPYGKLMSRWTVPWRVLSDDREHVYEVQNPVMGEMRYAYVVRVWFYADKELEVTRRMTKVFQYLEYQARYHIERIGDVKKAERGDEYVVRVYWQGLDEEESAWELVSKVLADTPVVLRAQLKQQKVRQPLKRALKMWYAL 205
            ASRG LP F VGD+V++ARVR++G   KL S WT PWRV+S  ++HVY VQN V G++R  +V R+ FYAD EL VT  +  VFQ+   Q  + +E I ++  A  G  Y+VRV W G +E+E  W+ +S +  D P  L+ +L++ K+ + +K  +K  Y +
Sbjct:    7 ASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKLSKEVKDNIKKEYGI 169          
BLAST of mRNA_H-paniculata_contig1944.4917.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 5.190e-36
Identity = 75/204 (36.76%), Postives = 121/204 (59.31%), Query Frame = 0
Query:    2 VKPLTPAQVEHEAERIVEAREERHRNGLCRRKSGRAKSCQRASRGGLPLFWVGDFVLMARVRKTGPYGKLMSRWTVPWRVLSDDREHVYEVQNPVMGEMRYAYVVRVWFYADKELEVTRRMTKVFQYLEYQARYHIERIGDVKKAERGDEYVVRVYWQGLDEEESAWELVSKVLADTPVVLRAQLKQQKVRQPLKRALKMWYAL 205
            +  L   +++ + + +++ +   H+    +    RA+    ASRG LP F VGD+V++ARVR++G   KL S WT PWRV+S  ++HVY VQN V G++R  +V R+ FYAD EL VT  +  VFQ+   Q  + +E I ++  A  G  Y+VRV W G +E+E  W+ +S +  D P  L+ +L++ K+ + +K  +K  Y +
Sbjct:  221 IDTLDATKLKQQVQNVIQTQAVLHKQIQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKLSKEIKDNIKKDYGI 424          
BLAST of mRNA_H-paniculata_contig1944.4917.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 7.900e-35
Identity = 75/204 (36.76%), Postives = 121/204 (59.31%), Query Frame = 0
Query:    2 VKPLTPAQVEHEAERIVEAREERHRNGLCRRKSGRAKSCQRASRGGLPLFWVGDFVLMARVRKTGPYGKLMSRWTVPWRVLSDDREHVYEVQNPVMGEMRYAYVVRVWFYADKELEVTRRMTKVFQYLEYQARYHIERIGDVKKAERGDEYVVRVYWQGLDEEESAWELVSKVLADTPVVLRAQLKQQKVRQPLKRALKMWYAL 205
            +  L   +++ + + +++ +   H+    +    RA+    ASRG LP F VGD+V++ARVR++G   KL S WT PWRV+S  ++HVY VQN V G++R  +V R+ FYAD EL VT  +  VFQ+   Q  + +E I ++  A  G  Y+VRV W G +E+E  W+ +S +  D P  L+ +L++ K+ + +K  +K  Y +
Sbjct: 1444 IDTLDATKLKQQVQNVIQTQAVLHKQVQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKLSKEVKDNIKKEYGI 1647          
BLAST of mRNA_H-paniculata_contig1944.4917.1 vs. uniprot
Match: A0A5D6XN34_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN34_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.640e-7
Identity = 41/136 (30.15%), Postives = 69/136 (50.74%), Query Frame = 0
Query:   44 SRGGLPLFWVGDFVLMARVRKTGPYGKLMSRWTVPWRVLSDDREHVYEVQNPVMGEMRYAYVVRVWFYADKELEVTRRMTKVFQYLEYQARYHIERIGDVKKAERGDEYVVRVYWQGLDEEESAWELVSKVLADTP 179
            S+G    F +GDFVL +R+       KL++RW  P+ V+     H   +Q+    +    +   + FY+D  LEVT  +     ++  Q      R    ++ ERG  + V + W+GL +EE +WEL++ ++AD P
Sbjct:  703 SKGNPCNFSIGDFVLWSRINTGLISNKLLARWVGPFAVIVS-APHSLTIQHLATNQQYIVHPSLLKFYSDSSLEVTEEL---LAHVGNQGVVLSVRDIKARRKERGV-WQVLIAWEGLQDEEDSWELLTSMIADIP 833          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1944.4917.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KAI3_9PHAE1.050e-3743.56Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JVS6_9PHAE5.190e-3636.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE7.900e-3536.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A5D6XN34_9STRA2.640e-730.15Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.40coord: 119..190
e-value: 1.1E-5
score: 27.2
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 135..197
score: 9.354
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 132..180

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1944contigH-paniculata_contig1944:21945..22568 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1944.4917.1mRNA_H-paniculata_contig1944.4917.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1944 21574..23153 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1944.4917.1 ID=prot_H-paniculata_contig1944.4917.1|Name=mRNA_H-paniculata_contig1944.4917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
MVKPLTPAQVEHEAERIVEAREERHRNGLCRRKSGRAKSCQRASRGGLPL
FWVGDFVLMARVRKTGPYGKLMSRWTVPWRVLSDDREHVYEVQNPVMGEM
RYAYVVRVWFYADKELEVTRRMTKVFQYLEYQARYHIERIGDVKKAERGD
EYVVRVYWQGLDEEESAWELVSKVLADTPVVLRAQLKQQKVRQPLKRALK
MWYALMV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000953Chromo/chromo_shadow_dom
IPR016197Chromo-like_dom_sf