mRNA_H-paniculata_contig1944.4917.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1944.4917.1
Unique NamemRNA_H-paniculata_contig1944.4917.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1944.4917.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 6.650e-35
Identity = 71/164 (43.29%), Postives = 105/164 (64.02%), Query Frame = 3 
Query:  498 ASRGGLPLFWVGDFVLMARVRKTGPYGKLMSRWTVPWRVLSDDREHVYEVQNPVMGEMRYAYVVRVWFYADKELEVTRRMTKVFQYLEYQARYHIERIGDVKKAERGDEYVVRVYWQGLDEEESAWELVSKVLADTPVVLRAQLKQQKVRQPLKRALKMWYALM 989
            ASRG LP F VGD+V++ARVR++G   KL S WT PWRV+S  ++HVY VQN V G++R  +V R+ FYAD EL VT  +  VFQ+   Q  + +E I ++  A  G  Y+VRV W G +E+E  W+ +S +  D P  L+ +L++ K+ + +K  +K  Y ++
Sbjct:    7 ASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKLSKEVKDNIKKEYGIV 170
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BLAST of mRNA_H-paniculata_contig1944.4917.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.500e-33
Identity = 75/205 (36.59%), Postives = 122/205 (59.51%), Query Frame = 3 
Query:  375 VKPLTPAQVEHEAERIVEAREERHRNGLCRRKSGRAKSCQRASRGGLPLFWVGDFVLMARVRKTGPYGKLMSRWTVPWRVLSDDREHVYEVQNPVMGEMRYAYVVRVWFYADKELEVTRRMTKVFQYLEYQARYHIERIGDVKKAERGDEYVVRVYWQGLDEEESAWELVSKVLADTPVVLRAQLKQQKVRQPLKRALKMWYALM 989
            +  L   +++ + + +++ +   H+    +    RA+    ASRG LP F VGD+V++ARVR++G   KL S WT PWRV+S  ++HVY VQN V G++R  +V R+ FYAD EL VT  +  VFQ+   Q  + +E I ++  A  G  Y+VRV W G +E+E  W+ +S +  D P  L+ +L++ K+ + +K  +K  Y ++
Sbjct:  221 IDTLDATKLKQQVQNVIQTQAVLHKQIQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKLSKEIKDNIKKDYGIV 425
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BLAST of mRNA_H-paniculata_contig1944.4917.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 4.260e-32
Identity = 75/205 (36.59%), Postives = 122/205 (59.51%), Query Frame = 3 
Query:  375 VKPLTPAQVEHEAERIVEAREERHRNGLCRRKSGRAKSCQRASRGGLPLFWVGDFVLMARVRKTGPYGKLMSRWTVPWRVLSDDREHVYEVQNPVMGEMRYAYVVRVWFYADKELEVTRRMTKVFQYLEYQARYHIERIGDVKKAERGDEYVVRVYWQGLDEEESAWELVSKVLADTPVVLRAQLKQQKVRQPLKRALKMWYALM 989
            +  L   +++ + + +++ +   H+    +    RA+    ASRG LP F VGD+V++ARVR++G   KL S WT PWRV+S  ++HVY VQN V G++R  +V R+ FYAD EL VT  +  VFQ+   Q  + +E I ++  A  G  Y+VRV W G +E+E  W+ +S +  D P  L+ +L++ K+ + +K  +K  Y ++
Sbjct: 1444 IDTLDATKLKQQVQNVIQTQAVLHKQVQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKLSKEVKDNIKKEYGIV 1648
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BLAST of mRNA_H-paniculata_contig1944.4917.1 vs. uniprot
Match: A0A5D6XN34_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN34_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 4.970e-6
Identity = 41/136 (30.15%), Postives = 69/136 (50.74%), Query Frame = 3 
Query:  501 SRGGLPLFWVGDFVLMARVRKTGPYGKLMSRWTVPWRVLSDDREHVYEVQNPVMGEMRYAYVVRVWFYADKELEVTRRMTKVFQYLEYQARYHIERIGDVKKAERGDEYVVRVYWQGLDEEESAWELVSKVLADTP 908
            S+G    F +GDFVL +R+       KL++RW  P+ V+     H   +Q+    +    +   + FY+D  LEVT  +     ++  Q      R    ++ ERG  + V + W+GL +EE +WEL++ ++AD P
Sbjct:  703 SKGNPCNFSIGDFVLWSRINTGLISNKLLARWVGPFAVIVS-APHSLTIQHLATNQQYIVHPSLLKFYSDSSLEVTEEL---LAHVGNQGVVLSVRDIKARRKERGV-WQVLIAWEGLQDEEDSWELLTSMIADIP 833
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BLAST of mRNA_H-paniculata_contig1944.4917.1 vs. uniprot
Match: F0WVN2_9STRA (AlNc14C300G10369 protein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WVN2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.530e-6
Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 2 
Query:    5 VKWCAIFGAPRTWVGETAARFKNRALRKTAAALGIHHHFSVADSAWTNGTVGRVMREVLR 184
            ++W ++FG  + WV +    F N  +     ALG ++HF+ A   W NGTV R+MRE++R
Sbjct:   40 LRWFSLFGECKNWVSDQGTHFLNAVINHMKRALGANYHFTTARRPWANGTVERLMRELVR 99
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BLAST of mRNA_H-paniculata_contig1944.4917.1 vs. uniprot
Match: A0A225VCH1_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VCH1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.390e-5
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 2 
Query:    2 LVKWCAIFGAPRTWVGETAARFKNRALRKTAAALGIHHHFSVADSAWTNGTVGRVMREVL 181
            L  WCA +G P+T + +  + F+N   +  AA L +  +F+   SAW NGTVGR+ R+VL
Sbjct:  344 LAMWCARYGIPKTLLSDQGSHFRNEMAKNLAARLKVKLNFTPVYSAWLNGTVGRLNRDVL 403
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1944.4917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KAI3_9PHAE6.650e-3543.29Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JVS6_9PHAE1.500e-3336.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE4.260e-3236.59Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A5D6XN34_9STRA4.970e-630.15Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
F0WVN2_9STRA8.530e-638.33AlNc14C300G10369 protein n=1 Tax=Albugo laibachii ... [more]
A0A225VCH1_9STRA3.390e-541.67Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1944contigH-paniculata_contig1944:21574..23153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue3.3e-11
Seed eggNOG ortholog4792.ETI44702
Hectar predicted targeting categoryother localisation
EggNOG OGs2CTK3@1,2RGJN@2759,3QI7W@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1580
Cds size624
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1944.4917.1prot_H-paniculata_contig1944.4917.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1944 21945..22568 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929478.15504-UTR-H-paniculata_contig1944:21573..219441622929478.15504-UTR-H-paniculata_contig1944:21573..21944Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1944 21574..21944 +
1691480879.0610237-UTR-H-paniculata_contig1944:21573..219441691480879.0610237-UTR-H-paniculata_contig1944:21573..21944Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1944 21574..21944 +
1622929478.1876376-UTR-H-paniculata_contig1944:22568..231531622929478.1876376-UTR-H-paniculata_contig1944:22568..23153Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1944 22569..23153 +
1691480879.0795028-UTR-H-paniculata_contig1944:22568..231531691480879.0795028-UTR-H-paniculata_contig1944:22568..23153Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1944 22569..23153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929478.166883-CDS-H-paniculata_contig1944:21944..225681622929478.166883-CDS-H-paniculata_contig1944:21944..22568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1944 21945..22568 +
1691480879.0721593-CDS-H-paniculata_contig1944:21944..225681691480879.0721593-CDS-H-paniculata_contig1944:21944..22568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1944 21945..22568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1944.4917.1

>prot_H-paniculata_contig1944.4917.1 ID=prot_H-paniculata_contig1944.4917.1|Name=mRNA_H-paniculata_contig1944.4917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
MVKPLTPAQVEHEAERIVEAREERHRNGLCRRKSGRAKSCQRASRGGLPL
FWVGDFVLMARVRKTGPYGKLMSRWTVPWRVLSDDREHVYEVQNPVMGEM
RYAYVVRVWFYADKELEVTRRMTKVFQYLEYQARYHIERIGDVKKAERGD
EYVVRVYWQGLDEEESAWELVSKVLADTPVVLRAQLKQQKVRQPLKRALK
MWYALMV*
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mRNA from alignment at H-paniculata_contig1944:21574..23153+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1944.4917.1 ID=mRNA_H-paniculata_contig1944.4917.1|Name=mRNA_H-paniculata_contig1944.4917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1580bp|location=Sequence derived from alignment at H-paniculata_contig1944:21574..23153+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGGTGAAGTGGTGCGCGATTTTTGGTGCGCCACGCACGTGGGTCGGCG
AGACTGCGGCGCGTTTCAAGAACCGTGCGCTGCGGAAGACTGCGGCAGCG
CTGGGGATTCACCATCATTTCTCGGTCGCCGACTCCGCGTGGACGAATGG
CACGGTCGGGCGGGTGATGCGCGAAGTGCTTAGGGCGCGCTGCAAGCGAC
GTTGGTGGAGGGAAGCAAACCGTTGGGGGAGTGGATGACGGTGGTGCTGG
CGGTGCAATGGGCGCTCGATATGGCGTGAAGGCCGAGTATCGGCACTACA
CCGTTCACTGTGATGATGGGCCGTGAGCCGCGGACAGGGTTTGAGGCTTT
GATGGAGGAAGCCAGCGAGGGATGGTGAAGCCGCTGACTCCCGCACAGGT
GGAGCATGAGGCGGAGCGGATCGTAGAGGCGCGGGAGGAACGCCACCGAA
ACGGTTTATGCCGTAGAAAATCCGGACGGGCGAAGAGTTGCCAGCGCGCA
AGTCGCGGGGGGTTGCCGCTTTTTTGGGTGGGTGATTTCGTGTTGATGGC
GCGCGTGCGAAAAACCGGGCCCTACGGTAAGCTAATGAGCAGGTGGACAG
TGCCGTGGCGGGTGTTGTCGGATGACAGAGAGCACGTGTACGAGGTACAA
AATCCTGTCATGGGCGAAATGCGCTACGCCTACGTGGTACGCGTGTGGTT
TTACGCGGACAAGGAGTTGGAGGTAACCCGTCGCATGACCAAGGTGTTCC
AGTACCTTGAATACCAAGCGCGATATCATATCGAGAGGATTGGAGACGTA
AAGAAGGCGGAGCGTGGTGATGAGTACGTGGTTCGTGTATATTGGCAGGG
GCTGGATGAAGAGGAAAGCGCGTGGGAGCTGGTATCGAAGGTGTTGGCGG
ATACACCGGTGGTGTTGCGTGCCCAGCTGAAACAACAGAAAGTAAGGCAA
CCGCTGAAGAGAGCTTTGAAGATGTGGTATGCACTGATGGTATGAGGTAT
CAGGTGATGGATTTGGAGTGCATACTTGTTTGGAGACGACGGAGGGTGCC
AAAACTATAGTCACATAGGTGGACGGAAGCATGTGGGGCGGTTGACGATG
GAATGTTCGGAAGTTAATGCCGGGCTGAGTCTAATATTGACGGTGTTTGG
TGACCGTATGATCACCGGTGATGGTTCATGATGTGAGAGATACGGTTTAT
CATAGGTGACATTTGCCGAATTTTTTCGTGGGAAATTGAAATACTGGGCG
ACCAACAAACGTTGTGATGATTTGCTGGCAGGGGATTTGCTTGACGGACG
GGGACTTGTTGGTATCATGTTTTTTGCGAAAACATAGCGTATATCGTTGT
CGAGTGATGCTTGAATGATTTTCGCATGTTTGGGCGTCCGTCGGATGTTT
TCGGATTATTTTGTTGGAAATGCCGTATGAAACTACGAACTTTGCCCTAT
CGTTTGCGAGATTTTTCGTGCTCCCAAAGCGCAGGCAAGTGCCACTGATG
GATCGATGGTGGAAGGTATCATGGACGGGGGGGGAAGACATAATTACGGC
GGTCGAGGGTGGCTTGGCGCCGGGCGATTC
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Coding sequence (CDS) from alignment at H-paniculata_contig1944:21574..23153+

>mRNA_H-paniculata_contig1944.4917.1 ID=mRNA_H-paniculata_contig1944.4917.1|Name=mRNA_H-paniculata_contig1944.4917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig1944:21574..23153+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAGCCGCTGACTCCCGCACAGGTGGAGCATGAGGCGGAGCGGAT
CGTAGAGGCGCGGGAGGAACGCCACCGAAACGGTTTATGCCGTAGAAAAT
CCGGACGGGCGAAGAGTTGCCAGCGCGCAAGTCGCGGGGGGTTGCCGCTT
TTTTGGGTGGGTGATTTCGTGTTGATGGCGCGCGTGCGAAAAACCGGGCC
CTACGGTAAGCTAATGAGCAGGTGGACAGTGCCGTGGCGGGTGTTGTCGG
ATGACAGAGAGCACGTGTACGAGGTACAAAATCCTGTCATGGGCGAAATG
CGCTACGCCTACGTGGTACGCGTGTGGTTTTACGCGGACAAGGAGTTGGA
GGTAACCCGTCGCATGACCAAGGTGTTCCAGTACCTTGAATACCAAGCGC
GATATCATATCGAGAGGATTGGAGACGTAAAGAAGGCGGAGCGTGGTGAT
GAGTACGTGGTTCGTGTATATTGGCAGGGGCTGGATGAAGAGGAAAGCGC
GTGGGAGCTGGTATCGAAGGTGTTGGCGGATACACCGGTGGTGTTGCGTG
CCCAGCTGAAACAACAGAAAGTAAGGCAACCGCTGAAGAGAGCTTTGAAG
ATGTGGTATGCACTGATGGTATGAATGGTGAAGCCGCTGACTCCCGCACA
GGTGGAGCATGAGGCGGAGCGGATCGTAGAGGCGCGGGAGGAACGCCACC
GAAACGGTTTATGCCGTAGAAAATCCGGACGGGCGAAGAGTTGCCAGCGC
GCAAGTCGCGGGGGGTTGCCGCTTTTTTGGGTGGGTGATTTCGTGTTGAT
GGCGCGCGTGCGAAAAACCGGGCCCTACGGTAAGCTAATGAGCAGGTGGA
CAGTGCCGTGGCGGGTGTTGTCGGATGACAGAGAGCACGTGTACGAGGTA
CAAAATCCTGTCATGGGCGAAATGCGCTACGCCTACGTGGTACGCGTGTG
GTTTTACGCGGACAAGGAGTTGGAGGTAACCCGTCGCATGACCAAGGTGT
TCCAGTACCTTGAATACCAAGCGCGATATCATATCGAGAGGATTGGAGAC
GTAAAGAAGGCGGAGCGTGGTGATGAGTACGTGGTTCGTGTATATTGGCA
GGGGCTGGATGAAGAGGAAAGCGCGTGGGAGCTGGTATCGAAGGTGTTGG
CGGATACACCGGTGGTGTTGCGTGCCCAGCTGAAACAACAGAAAGTAAGG
CAACCGCTGAAGAGAGCTTTGAAGATGTGGTATGCACTGATGGTATGA
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