mRNA_H-paniculata_contig19435.4914.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19435.4914.1
Unique NamemRNA_H-paniculata_contig19435.4914.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19435.4914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19435contigH-paniculata_contig19435:147..485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19435.4914.1prot_H-paniculata_contig19435.4914.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19435 154..471 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929477.76151-UTR-H-paniculata_contig19435:146..1531622929477.76151-UTR-H-paniculata_contig19435:146..153Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19435 147..153 +
1691480878.9612916-UTR-H-paniculata_contig19435:146..1531691480878.9612916-UTR-H-paniculata_contig19435:146..153Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19435 147..153 +
1622929477.7876856-UTR-H-paniculata_contig19435:471..4851622929477.7876856-UTR-H-paniculata_contig19435:471..485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19435 472..485 +
1691480878.988817-UTR-H-paniculata_contig19435:471..4851691480878.988817-UTR-H-paniculata_contig19435:471..485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19435 472..485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929477.7770684-CDS-H-paniculata_contig19435:153..4711622929477.7770684-CDS-H-paniculata_contig19435:153..471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19435 154..471 +
1691480878.978969-CDS-H-paniculata_contig19435:153..4711691480878.978969-CDS-H-paniculata_contig19435:153..471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19435 154..471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19435.4914.1

>prot_H-paniculata_contig19435.4914.1 ID=prot_H-paniculata_contig19435.4914.1|Name=mRNA_H-paniculata_contig19435.4914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MLESGEIFLKIEYEVKNGSNVADQSCLRRNVTTTMKQNGDIFLSLLELLD
YLSCANTEQTRVERRGRGGSVKDWCPHGQECYTRTSVCFTVAQTVLPPQL
LLQVR*
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mRNA from alignment at H-paniculata_contig19435:147..485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19435.4914.1 ID=mRNA_H-paniculata_contig19435.4914.1|Name=mRNA_H-paniculata_contig19435.4914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig19435:147..485+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGAGAATGTTGGAGAGCGGGGAAATATTTCTAAAAATTGAATATGAAG
TGAAAAATGGGTCAAATGTAGCAGATCAATCGTGTCTACGCAGAAACGTG
ACAACGACAATGAAACAAAATGGAGATATCTTTCTCAGTCTCTTAGAATT
ACTGGACTACTTATCTTGTGCTAATACAGAACAAACTAGGGTGGAGAGGC
GGGGGAGGGGAGGTAGCGTCAAAGACTGGTGTCCCCATGGCCAGGAATGC
TACACACGAACAAGTGTTTGCTTCACTGTCGCTCAAACCGTGCTCCCGCC
CCAGCTACTCCTTCAAGTCAGGTAAATTTTAGGGCTGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig19435:147..485+

>mRNA_H-paniculata_contig19435.4914.1 ID=mRNA_H-paniculata_contig19435.4914.1|Name=mRNA_H-paniculata_contig19435.4914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig19435:147..485+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGAGAGCGGGGAAATATTTCTAAAAATTGAATATGAAGTGAAAAA
TGGGTCAAATGTAGCAGATCAATCGTGTCTACGCAGAAACGTGACAACGA
CAATGAAACAAAATGGAGATATCTTTCTCAGTCTCTTAGAATTACTGGAC
TACTTATCTTGTGCTAATACAGAACAAACTAGGGTGGAGAGGCGGGGGAG
GGGAGGTAGCGTCAAAGACTGGTGTCCCCATGGCCAGGAATGCTACACAC
GAACAAGTGTTTGCTTCACTGTCGCTCAAACCGTGCTCCCGCCCCAGCTA
CTCCTTCAAGTCAGGTAAATGTTGGAGAGCGGGGAAATATTTCTAAAAAT
TGAATATGAAGTGAAAAATGGGTCAAATGTAGCAGATCAATCGTGTCTAC
GCAGAAACGTGACAACGACAATGAAACAAAATGGAGATATCTTTCTCAGT
CTCTTAGAATTACTGGACTACTTATCTTGTGCTAATACAGAACAAACTAG
GGTGGAGAGGCGGGGGAGGGGAGGTAGCGTCAAAGACTGGTGTCCCCATG
GCCAGGAATGCTACACACGAACAAGTGTTTGCTTCACTGTCGCTCAAACC
GTGCTCCCGCCCCAGCTACTCCTTCAAGTCAGGTAA
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