mRNA_H-paniculata_contig19407.4907.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19407.4907.1
Unique NamemRNA_H-paniculata_contig19407.4907.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: D8LLS9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS9_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.870e-33
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 1
Query:    1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
            IQ CWR RVS+SIYRYYRN+I+FRL GDPRLLLRAINPGEA+LFD+AAGVHVRFRLGG++FPPSIYYKV
Sbjct:  175 IQTCWRSRVSKSIYRYYRNVIDFRLGGDPRLLLRAINPGEAALFDRAAGVHVRFRLGGYTFPPSIYYKV 243          
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: A0A7S2RW27_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW27_9STRA)

HSP 1 Score: 105 bits (263), Expect = 4.300e-25
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1
Query:    1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
            IQ CWR   +  +YRYYR++I FRL G+P +LLR INP EA+LFDKA GVHVRFRLGG SFPP++YYKV
Sbjct:  135 IQHCWRSHANTRVYRYYRDLIQFRLTGNPAMLLRTINPREAALFDKATGVHVRFRLGGSSFPPALYYKV 203          
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: A0A3P8ZRC5_ESOLU (Linkage group 21 C11orf65 homolog n=4 Tax=Esox lucius TaxID=8010 RepID=A0A3P8ZRC5_ESOLU)

HSP 1 Score: 103 bits (256), Expect = 1.280e-24
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
            IQ  WRR V   +++Y++N++ FR RGDPRLLLR +NP EA + D AAGVH+RFRLGG SFPPSIYYK+
Sbjct:   63 IQRTWRRHVDTRVFQYFKNLVRFRSRGDPRLLLRRVNPNEADILDAAAGVHIRFRLGGTSFPPSIYYKI 131          
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: H3AGU7_LATCH (Uncharacterized protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AGU7_LATCH)

HSP 1 Score: 101 bits (251), Expect = 2.840e-24
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 1
Query:    1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
            IQ  WR+ +   ++++Y+++INFRL+GDPRLLLR INP EA L D AAG+HVRFRLGG  FPP+IYYK+
Sbjct:   22 IQRAWRKCIDIHVFKFYKSLINFRLKGDPRLLLRCINPREAELLDAAAGIHVRFRLGGIKFPPNIYYKI 90          
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: UPI001EAF48D0 (protein MFI-like n=3 Tax=Oncorhynchus TaxID=8016 RepID=UPI001EAF48D0)

HSP 1 Score: 99.4 bits (246), Expect = 5.190e-24
Identity = 42/69 (60.87%), Postives = 56/69 (81.16%), Query Frame = 1
Query:    1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
            IQ  WRR V   +++Y++N++ FR +GDPRLLL+ +NP EA++ D AAGVH+RFRLGG SFPPSIYYK+
Sbjct:   71 IQRTWRRHVDTRVFQYFKNLVRFRNQGDPRLLLKNVNPREANILDAAAGVHIRFRLGGTSFPPSIYYKI 139          
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: W5M1T2_LEPOC (Chromosome LG3 open reading frame, human C11orf65 n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5M1T2_LEPOC)

HSP 1 Score: 100 bits (250), Expect = 8.000e-24
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
            IQ  WRR +   +++YY+++I+FR +GDPRLLLR +NP EA L D AAGVH+RFRLGG  FPPSIYYK+
Sbjct:   33 IQRAWRRHIDTHVFKYYKDLISFRKKGDPRLLLRYVNPKEADLLDAAAGVHIRFRLGGTKFPPSIYYKI 101          
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: UPI001EE516EA (uncharacterized protein LOC124274849 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE516EA)

HSP 1 Score: 102 bits (253), Expect = 1.220e-23
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
            IQ  WRR +   +YRYYR++INFR RGDP L+LR INP EA + D AAG+HVRFRL G  FPP+IYYK+
Sbjct:  237 IQRAWRRHIDVQVYRYYRDLINFRTRGDPGLMLRCINPNEAKMLDSAAGIHVRFRLAGERFPPNIYYKI 305          
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: H2YYQ0_CIOSA (Uncharacterized protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YYQ0_CIOSA)

HSP 1 Score: 98.6 bits (244), Expect = 1.260e-23
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
            IQ  WRR +   ++RYYR++INFR  GDP L+L+ INP EA L D AAGVH+RFRL G  FPP+IYYK+
Sbjct:    6 IQRAWRRHIDMQVFRYYRDLINFRGHGDPALMLKCINPNEAKLLDSAAGVHIRFRLAGEKFPPNIYYKI 74          
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: A0A7D9K0H6_PARCT (Uncharacterized protein (Fragment) n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9K0H6_PARCT)

HSP 1 Score: 97.4 bits (241), Expect = 1.520e-23
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
            IQ  WR+ V   +YRYYR++I+F+ RGDP LLLR INP EA L D  +G HV+FRLGG +FPP IYYK+
Sbjct:   83 IQKAWRKHVDMQVYRYYRDLISFKFRGDPALLLRCINPREAELLDPGSGTHVKFRLGGRTFPPHIYYKI 151          
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: UPI001EB05E66 (uncharacterized protein LOC124111893 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB05E66)

HSP 1 Score: 101 bits (252), Expect = 1.570e-23
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
            IQ  WRR +   +YRYYR++INFR RGDP L+LR INP EA + D AAG+HVRFRL G  FPP+IYYK+
Sbjct:  216 IQRAWRRHIDIQVYRYYRDLINFRTRGDPGLMLRCINPNEAKMLDSAAGIHVRFRLAGERFPPNIYYKI 284          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLS9_ECTSI1.870e-3385.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S2RW27_9STRA4.300e-2568.12Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3P8ZRC5_ESOLU1.280e-2463.77Linkage group 21 C11orf65 homolog n=4 Tax=Esox luc... [more]
H3AGU7_LATCH2.840e-2462.32Uncharacterized protein n=1 Tax=Latimeria chalumna... [more]
UPI001EAF48D05.190e-2460.87protein MFI-like n=3 Tax=Oncorhynchus TaxID=8016 R... [more]
W5M1T2_LEPOC8.000e-2462.32Chromosome LG3 open reading frame, human C11orf65 ... [more]
UPI001EE516EA1.220e-2363.77uncharacterized protein LOC124274849 n=1 Tax=Halio... [more]
H2YYQ0_CIOSA1.260e-2360.87Uncharacterized protein n=1 Tax=Ciona savignyi Tax... [more]
A0A7D9K0H6_PARCT1.520e-2360.87Uncharacterized protein (Fragment) n=3 Tax=Paramur... [more]
UPI001EB05E661.570e-2363.77uncharacterized protein LOC124111893 n=1 Tax=Halio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19407contigH-paniculata_contig19407:3309..4264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue1.8e-28
Seed eggNOG ortholog2880.D8LLS9
Preferred nameC11orf65
Hectar predicted targeting categorymitochondrion
EggNOG OGs28KCH@1,2QSTG@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_002720.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929477.0315533-CDS-H-paniculata_contig19407:3308..33611622929477.0315533-CDS-H-paniculata_contig19407:3308..3361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19407 3309..3361 +
1691480878.59108-CDS-H-paniculata_contig19407:3308..33611691480878.59108-CDS-H-paniculata_contig19407:3308..3361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19407 3309..3361 +
1622929477.0449498-CDS-H-paniculata_contig19407:4095..42641622929477.0449498-CDS-H-paniculata_contig19407:4095..4264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19407 4096..4264 +
1691480878.6065784-CDS-H-paniculata_contig19407:4095..42641691480878.6065784-CDS-H-paniculata_contig19407:4095..4264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19407 4096..4264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19407.4907.1prot_H-paniculata_contig19407.4907.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19407 3309..4264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19407.4907.1

>prot_H-paniculata_contig19407.4907.1 ID=prot_H-paniculata_contig19407.4907.1|Name=mRNA_H-paniculata_contig19407.4907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGV
HVRFRLGGFSFPPSIYYKVCIRS*
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mRNA from alignment at H-paniculata_contig19407:3309..4264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19407.4907.1 ID=mRNA_H-paniculata_contig19407.4907.1|Name=mRNA_H-paniculata_contig19407.4907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=956bp|location=Sequence derived from alignment at H-paniculata_contig19407:3309..4264+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACAAGGATGCTGGAGGCGAAGAGTGTCCCAGAGTATCTACCGCTACTA CAGGTGAGTCTCAACTACGCCACTTGCAGTAAATAAAAGCCCGATAGTCT GGAGGTACTCAAAATTGCTAGGTATTCAGAGTAGGAGCAATTCGGATTCC GCCGAAGTGCGAGCCATTTTCTTATTGTAAGTGGTTACCGGGACGAGGGG AGTGGGGGGTCGGAGTAGGAGGAAACTCTCGTGTACATCTAGTATGAGTT GTTCAACGATCGAGAGAGGGCAAAGCAGCAGACCTGGAACATTCTATGAT AAGTTGGGAAACGTTCATCTTCTTCCTTACCCCGAGGACGCTACTGCACT ATCTCCAGTTTGTTCAATTCGTGGATAATAACCAAGCAATCCAGCACCTT AAAGATGCTGAGCGTACCTCCATCCACAATCCCCCCCGCCTGCCCAACGA TGTGTCATAGGGCAATGCTTCGTCAAGGTGTTGTGCCAGATAAATCGTCT GATGAAAACGTATACATACAGGGGATGCTAAAGCATAATTCCCGAGGTGT GCTCTGTAGAGCGCTCGCCTAACCATCTAATACACCCCCCTTCCCCCATC GATCGTTTTTTAGTCACATTTGGCAACGTAAGAAAGAGCGACTAGCTATC ATCGGAGACAGTCTTGATAGGAACATAGCTCCATCCTCTCGAGAACTCAT GTGCGTGGTCAACGGTCCGAAACCTAAAGCTACATGATGAGTACAAGTAC ACACACCTGGTCGGTCATTGAACAATTCACGTCCCAGGAACATAATTAAT TTTCGTCTACGCGGAGATCCGCGCTTGCTTCTGCGGGCAATTAATCCAGG AGAGGCGAGTTTGTTCGACAAGGCGGCCGGAGTGCACGTGCGGTTCCGAC TGGGTGGTTTTTCTTTCCCTCCGTCCATCTACTACAAGGTATGCATACGG TCTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig19407:3309..4264+

>mRNA_H-paniculata_contig19407.4907.1 ID=mRNA_H-paniculata_contig19407.4907.1|Name=mRNA_H-paniculata_contig19407.4907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig19407:3309..4264+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACAAGGATGCTGGAGGCGAAGAGTGTCCCAGAGTATCTACCGCTACTA
CAGATACAAGGATGCTGGAGGCGAAGAGTGTCCCAGAGTATCTACCGCTA
CTACAGGAACATAATTAATTTTCGTCTACGCGGAGATCCGCGCTTGCTTC
TGCGGGCAATTAATCCAGGAGAGGCGAGTTTGTTCGACAAGGCGGCCGGA
GTGCACGTGCGGTTCCGACTGGGTGGTTTTTCTTTCCCTCCGTCCATCTA
CTACAAGGTATGCATACGGTCTTAAGAACATAATTAATTTTCGTCTACGC
GGAGATCCGCGCTTGCTTCTGCGGGCAATTAATCCAGGAGAGGCGAGTTT
GTTCGACAAGGCGGCCGGAGTGCACGTGCGGTTCCGACTGGGTGGTTTTT
CTTTCCCTCCGTCCATCTACTACAAGGTATGCATACGGTCTTAA
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