mRNA_H-paniculata_contig19407.4907.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: D8LLS9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS9_ECTSI) HSP 1 Score: 128 bits (322), Expect = 1.870e-33 Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 1
Query: 1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
IQ CWR RVS+SIYRYYRN+I+FRL GDPRLLLRAINPGEA+LFD+AAGVHVRFRLGG++FPPSIYYKV
Sbjct: 175 IQTCWRSRVSKSIYRYYRNVIDFRLGGDPRLLLRAINPGEAALFDRAAGVHVRFRLGGYTFPPSIYYKV 243
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: A0A7S2RW27_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW27_9STRA) HSP 1 Score: 105 bits (263), Expect = 4.300e-25 Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
IQ CWR + +YRYYR++I FRL G+P +LLR INP EA+LFDKA GVHVRFRLGG SFPP++YYKV
Sbjct: 135 IQHCWRSHANTRVYRYYRDLIQFRLTGNPAMLLRTINPREAALFDKATGVHVRFRLGGSSFPPALYYKV 203
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: A0A3P8ZRC5_ESOLU (Linkage group 21 C11orf65 homolog n=4 Tax=Esox lucius TaxID=8010 RepID=A0A3P8ZRC5_ESOLU) HSP 1 Score: 103 bits (256), Expect = 1.280e-24 Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
IQ WRR V +++Y++N++ FR RGDPRLLLR +NP EA + D AAGVH+RFRLGG SFPPSIYYK+
Sbjct: 63 IQRTWRRHVDTRVFQYFKNLVRFRSRGDPRLLLRRVNPNEADILDAAAGVHIRFRLGGTSFPPSIYYKI 131
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: H3AGU7_LATCH (Uncharacterized protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AGU7_LATCH) HSP 1 Score: 101 bits (251), Expect = 2.840e-24 Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
IQ WR+ + ++++Y+++INFRL+GDPRLLLR INP EA L D AAG+HVRFRLGG FPP+IYYK+
Sbjct: 22 IQRAWRKCIDIHVFKFYKSLINFRLKGDPRLLLRCINPREAELLDAAAGIHVRFRLGGIKFPPNIYYKI 90
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: UPI001EAF48D0 (protein MFI-like n=3 Tax=Oncorhynchus TaxID=8016 RepID=UPI001EAF48D0) HSP 1 Score: 99.4 bits (246), Expect = 5.190e-24 Identity = 42/69 (60.87%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
IQ WRR V +++Y++N++ FR +GDPRLLL+ +NP EA++ D AAGVH+RFRLGG SFPPSIYYK+
Sbjct: 71 IQRTWRRHVDTRVFQYFKNLVRFRNQGDPRLLLKNVNPREANILDAAAGVHIRFRLGGTSFPPSIYYKI 139
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: W5M1T2_LEPOC (Chromosome LG3 open reading frame, human C11orf65 n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5M1T2_LEPOC) HSP 1 Score: 100 bits (250), Expect = 8.000e-24 Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
IQ WRR + +++YY+++I+FR +GDPRLLLR +NP EA L D AAGVH+RFRLGG FPPSIYYK+
Sbjct: 33 IQRAWRRHIDTHVFKYYKDLISFRKKGDPRLLLRYVNPKEADLLDAAAGVHIRFRLGGTKFPPSIYYKI 101
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: UPI001EE516EA (uncharacterized protein LOC124274849 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE516EA) HSP 1 Score: 102 bits (253), Expect = 1.220e-23 Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1
Query: 1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
IQ WRR + +YRYYR++INFR RGDP L+LR INP EA + D AAG+HVRFRL G FPP+IYYK+
Sbjct: 237 IQRAWRRHIDVQVYRYYRDLINFRTRGDPGLMLRCINPNEAKMLDSAAGIHVRFRLAGERFPPNIYYKI 305
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: H2YYQ0_CIOSA (Uncharacterized protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YYQ0_CIOSA) HSP 1 Score: 98.6 bits (244), Expect = 1.260e-23 Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 1
Query: 1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
IQ WRR + ++RYYR++INFR GDP L+L+ INP EA L D AAGVH+RFRL G FPP+IYYK+
Sbjct: 6 IQRAWRRHIDMQVFRYYRDLINFRGHGDPALMLKCINPNEAKLLDSAAGVHIRFRLAGEKFPPNIYYKI 74
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: A0A7D9K0H6_PARCT (Uncharacterized protein (Fragment) n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9K0H6_PARCT) HSP 1 Score: 97.4 bits (241), Expect = 1.520e-23 Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 1
Query: 1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
IQ WR+ V +YRYYR++I+F+ RGDP LLLR INP EA L D +G HV+FRLGG +FPP IYYK+
Sbjct: 83 IQKAWRKHVDMQVYRYYRDLISFKFRGDPALLLRCINPREAELLDPGSGTHVKFRLGGRTFPPHIYYKI 151
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Match: UPI001EB05E66 (uncharacterized protein LOC124111893 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB05E66) HSP 1 Score: 101 bits (252), Expect = 1.570e-23 Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1
Query: 1 IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVHVRFRLGGFSFPPSIYYKV 207
IQ WRR + +YRYYR++INFR RGDP L+LR INP EA + D AAG+HVRFRL G FPP+IYYK+
Sbjct: 216 IQRAWRRHIDIQVYRYYRDLINFRTRGDPGLMLRCINPNEAKMLDSAAGIHVRFRLAGERFPPNIYYKI 284 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19407.4907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19407.4907.1 >prot_H-paniculata_contig19407.4907.1 ID=prot_H-paniculata_contig19407.4907.1|Name=mRNA_H-paniculata_contig19407.4907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp IQGCWRRRVSQSIYRYYRNIINFRLRGDPRLLLRAINPGEASLFDKAAGVback to top mRNA from alignment at H-paniculata_contig19407:3309..4264+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig19407.4907.1 ID=mRNA_H-paniculata_contig19407.4907.1|Name=mRNA_H-paniculata_contig19407.4907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=956bp|location=Sequence derived from alignment at H-paniculata_contig19407:3309..4264+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig19407:3309..4264+ >mRNA_H-paniculata_contig19407.4907.1 ID=mRNA_H-paniculata_contig19407.4907.1|Name=mRNA_H-paniculata_contig19407.4907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig19407:3309..4264+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |