mRNA_H-paniculata_contig19391.4902.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19391.4902.1
Unique NamemRNA_H-paniculata_contig19391.4902.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19391.4902.1 vs. uniprot
Match: A0A6H5KU04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU04_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 6.420e-6
Identity = 23/62 (37.10%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    1 IKLASDKFSSKRTRPINVNHHAICDVVDGEKVTIVYVGTGSQHADILTKAAEERTFEGHIHA 186
            I L  + FSS R++ I+V  H I ++    ++++ Y+ T  QHAD+LTKA      E H +A
Sbjct:   44 ISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNA 105
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BLAST of mRNA_H-paniculata_contig19391.4902.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 3.410e-5
Identity = 23/62 (37.10%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    1 IKLASDKFSSKRTRPINVNHHAICDVVDGEKVTIVYVGTGSQHADILTKAAEERTFEGHIHA 186
            I L  + FSS R++ I+V  H I ++    ++++ Y+ T  QHAD+LTKA      E H +A
Sbjct:  304 ISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNA 365
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BLAST of mRNA_H-paniculata_contig19391.4902.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 3.530e-5
Identity = 23/62 (37.10%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    1 IKLASDKFSSKRTRPINVNHHAICDVVDGEKVTIVYVGTGSQHADILTKAAEERTFEGHIHA 186
            I L  + FSS R++ I+V  H I ++    ++++ Y+ T  QHAD+LTKA      E H +A
Sbjct: 1179 ISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNA 1240
[Close]
BLAST of mRNA_H-paniculata_contig19391.4902.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 3.550e-5
Identity = 23/62 (37.10%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    1 IKLASDKFSSKRTRPINVNHHAICDVVDGEKVTIVYVGTGSQHADILTKAAEERTFEGHIHA 186
            I L  + FSS R++ I+V  H I ++    ++++ Y+ T  QHAD+LTKA      E H +A
Sbjct: 1732 ISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNA 1793
[Close]
BLAST of mRNA_H-paniculata_contig19391.4902.1 vs. uniprot
Match: K1WQ84_TRIAC (Uncharacterized protein n=1 Tax=Trichosporon asahii var. asahii (strain CBS 8904) TaxID=1220162 RepID=K1WQ84_TRIAC)

HSP 1 Score: 46.2 bits (108), Expect = 9.580e-5
Identity = 23/62 (37.10%), Postives = 33/62 (53.23%), Query Frame = 1 
Query:    1 IKLASDKFSSKRTRPINVNHHAICDVVDGEKVTIVYVGTGSQHADILTKAAEERTFEGHIHA 186
            I++A    S    + I+V HH + + V+  K+T+ YV T  QHAD+ TKA    T   H  A
Sbjct:   31 IRIAEKPVSFPLAKHIDVRHHFVREEVEKGKITLSYVKTSDQHADVFTKALPGPTHAFHTKA 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19391.4902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KU04_9PHAE6.420e-637.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K6_9PHAE3.410e-537.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKS3_9PHAE3.530e-537.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE3.550e-537.10Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
K1WQ84_TRIAC9.580e-537.10Uncharacterized protein n=1 Tax=Trichosporon asahi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19391contigH-paniculata_contig19391:1704..1895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929476.012889-CDS-H-paniculata_contig19391:1703..18951622929476.012889-CDS-H-paniculata_contig19391:1703..1895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19391 1704..1895 +
1691480878.049415-CDS-H-paniculata_contig19391:1703..18951691480878.049415-CDS-H-paniculata_contig19391:1703..1895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19391 1704..1895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19391.4902.1prot_H-paniculata_contig19391.4902.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19391 1704..1895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19391.4902.1

>prot_H-paniculata_contig19391.4902.1 ID=prot_H-paniculata_contig19391.4902.1|Name=mRNA_H-paniculata_contig19391.4902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
IKLASDKFSSKRTRPINVNHHAICDVVDGEKVTIVYVGTGSQHADILTKA
AEERTFEGHIHAC*
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mRNA from alignment at H-paniculata_contig19391:1704..1895+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19391.4902.1 ID=mRNA_H-paniculata_contig19391.4902.1|Name=mRNA_H-paniculata_contig19391.4902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig19391:1704..1895+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAAGCTCGCCAGCGACAAGTTCAGCAGCAAGAGGACGAGGCCCATCAA
CGTTAATCATCACGCCATTTGTGATGTTGTAGATGGAGAAAAGGTTACCA
TTGTGTATGTAGGAACGGGGAGTCAGCATGCAGATATACTGACCAAGGCT
GCGGAGGAGCGTACGTTTGAGGGGCATATACATGCGTGCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig19391:1704..1895+

>mRNA_H-paniculata_contig19391.4902.1 ID=mRNA_H-paniculata_contig19391.4902.1|Name=mRNA_H-paniculata_contig19391.4902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig19391:1704..1895+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAAGCTCGCCAGCGACAAGTTCAGCAGCAAGAGGACGAGGCCCATCAA
CGTTAATCATCACGCCATTTGTGATGTTGTAGATGGAGAAAAGGTTACCA
TTGTGTATGTAGGAACGGGGAGTCAGCATGCAGATATACTGACCAAGGCT
GCGGAGGAGCGTACGTTTGAGGGGCATATACATGCGTGCTAAATCAAGCT
CGCCAGCGACAAGTTCAGCAGCAAGAGGACGAGGCCCATCAACGTTAATC
ATCACGCCATTTGTGATGTTGTAGATGGAGAAAAGGTTACCATTGTGTAT
GTAGGAACGGGGAGTCAGCATGCAGATATACTGACCAAGGCTGCGGAGGA
GCGTACGTTTGAGGGGCATATACATGCGTGCTAA
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