mRNA_H-paniculata_contig19387.4899.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19387.4899.1
Unique NamemRNA_H-paniculata_contig19387.4899.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19387.4899.1 vs. uniprot
Match: A0A6H5KQC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC1_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.240e-10
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 VRLVVFQGGRRESVAQVLVTRNLD---DGNTEYGHVKCIKVRSDFRGQGFGYLLLKEA 165
            VRL VFQGGRR SVAQ+L +   +   + N  YGHVK +KV  DFRG G G LL KEA
Sbjct:  123 VRLAVFQGGRRVSVAQILFSLKQEWRGESNHTYGHVKSVKVDQDFRGIGLGPLLFKEA 180
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BLAST of mRNA_H-paniculata_contig19387.4899.1 vs. uniprot
Match: D7FMU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMU8_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 7.440e-10
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 VRLVVFQGGRRESVAQVLVTRNLD---DGNTEYGHVKCIKVRSDFRGQGFGYLLLKE 162
            VRL VFQGGRR SVAQ+L +   +   + N  YGHVK +KV  DFRG G G LL KE
Sbjct:  124 VRLAVFQGGRRMSVAQILFSLKQEGRGENNHAYGHVKSVKVDQDFRGIGLGPLLFKE 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19387.4899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQC1_9PHAE1.240e-1058.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMU8_ECTSI7.440e-1057.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19387contigH-paniculata_contig19387:355..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size166
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929475.4723864-CDS-H-paniculata_contig19387:354..5191622929475.4723864-CDS-H-paniculata_contig19387:354..519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19387 355..519 +
1691480877.7934246-CDS-H-paniculata_contig19387:354..5191691480877.7934246-CDS-H-paniculata_contig19387:354..519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19387 355..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19387.4899.1prot_H-paniculata_contig19387.4899.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19387 355..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19387.4899.1

>prot_H-paniculata_contig19387.4899.1 ID=prot_H-paniculata_contig19387.4899.1|Name=mRNA_H-paniculata_contig19387.4899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
VRLVVFQGGRRESVAQVLVTRNLDDGNTEYGHVKCIKVRSDFRGQGFGYL
LLKEA
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mRNA from alignment at H-paniculata_contig19387:355..520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19387.4899.1 ID=mRNA_H-paniculata_contig19387.4899.1|Name=mRNA_H-paniculata_contig19387.4899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=166bp|location=Sequence derived from alignment at H-paniculata_contig19387:355..520+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAGGCTGGTGGTCTTTCAAGGCGGAAGACGCGAGTCGGTGGCTCAGGT
TCTCGTCACGCGTAACCTCGACGACGGAAACACCGAGTACGGTCACGTGA
AATGCATCAAGGTCCGGAGCGATTTTCGCGGTCAGGGCTTCGGGTACCTT
CTTTTGAAAGAGGCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19387:355..520+

>mRNA_H-paniculata_contig19387.4899.1 ID=mRNA_H-paniculata_contig19387.4899.1|Name=mRNA_H-paniculata_contig19387.4899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig19387:355..520+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAGGCTGGTGGTCTTTCAAGGCGGAAGACGCGAGTCGGTGGCTCAGGT
TCTCGTCACGCGTAACCTCGACGACGGAAACACCGAGTACGGTCACGTGA
AATGCATCAAGGTCCGGAGCGATTTTCGCGGTCAGGGCTTCGGGTACCTT
CTTTTGAAAGAGGCGGTCAGGCTGGTGGTCTTTCAAGGCGGAAGACGCGA
GTCGGTGGCTCAGGTTCTCGTCACGCGTAACCTCGACGACGGAAACACCG
AGTACGGTCACGTGAAATGCATCAAGGTCCGGAGCGATTTTCGCGGTCAG
GGCTTCGGGTACCTTCTTTTGAAAGAGGCG
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