mRNA_H-paniculata_contig19375.4897.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19375.4897.1
Unique NamemRNA_H-paniculata_contig19375.4897.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19375.4897.1 vs. uniprot
Match: D8LKT4_ECTSI (DUF202 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKT4_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 7.610e-60
Identity = 94/127 (74.02%), Postives = 106/127 (83.46%), Query Frame = 1
Query:    1 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLLSLADDLGTVSMDSLALVLGVTFVLCTLFTYLTGWLRYARVKQVLTWQGDQVKARFGRFGLGYQAKFLGVALILTVPLYIAGGIYTVTE 381
            FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSL+SL DD+G+ +MDS A+ LGV FV CTLFTY+TGWLRY RVK+VLTW G QVK RFGRFGL Y   FLG +L+LTVP+Y   G+  V +
Sbjct:  149 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGSATMDSTAMALGVAFVACTLFTYMTGWLRYTRVKEVLTWTGSQVKGRFGRFGLKYFTWFLGASLVLTVPVYFIAGVNVVED 275          
BLAST of mRNA_H-paniculata_contig19375.4897.1 vs. uniprot
Match: A0A7S2GM95_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GM95_9STRA)

HSP 1 Score: 125 bits (314), Expect = 7.770e-34
Identity = 65/126 (51.59%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    1 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLLSLADDLGTVSMDSLALVLGVTFVLCTLFTYLTGWLRYARVKQVLTWQGDQVKARFGRFGLGYQAKFLGVALILTVPLYIAGGIYTVT 378
            FRG++LKFERV AHLANERTWLAWVRTALS L +A SLL+L+D+     +     V+G   V   L T++TGWLRY RVK VL      + A FGR GL +QA+FL + L +    YI GG + ++
Sbjct:   67 FRGQVLKFERVQAHLANERTWLAWVRTALSALSIAFSLLTLSDESTKQWLKVTLFVVGSLMVANVLMTFVTGWLRYVRVKDVLMLDKQDMSANFGRLGLSHQARFLSLLLFVISFAYITGGSHDIS 192          
BLAST of mRNA_H-paniculata_contig19375.4897.1 vs. uniprot
Match: A0A7S2Y0E1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0E1_9STRA)

HSP 1 Score: 124 bits (312), Expect = 6.350e-33
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    1 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLLSLADDLGTVSMDSLALVLGVTFVLCTLFTYLTGWLRYARVKQVLTWQGDQVKARFGRFGLGYQAKFLGVALILTVPLY 351
            FRGELLKFERVNAHLANERT+LAWVRTALSVL  A S+ SL +D    +   +  + G  +V+  LFTY TGW+RY++V+ +L     +VKA+FGRFGL + AKFL    + T   Y
Sbjct:  122 FRGELLKFERVNAHLANERTFLAWVRTALSVLSSAFSIDSLTEDFSDGAFKVMVFIFGCLYVVGVLFTYTTGWVRYSQVRAILGLPASKVKAQFGRFGLSHVAKFLAFLFLFTAIGY 238          
BLAST of mRNA_H-paniculata_contig19375.4897.1 vs. uniprot
Match: A0A7S2WVC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVC3_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.150e-32
Identity = 65/124 (52.42%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLLSLADDLGTVSMDSLAL---VLGVTFVLCTLFTYLTGWLRYARVKQVLTWQGDQVKARFGRFGLGYQAKFLGVALILTVPLYIAGG 363
            FRG++LKFERV AHLANERTWLAWVRTAL+ L ++ +LL+L+DD    + D LAL   V+G   V+  LFT++TGWLRY RVK VL  +  ++   FGRFGL + A+FL   L+     Y+ G 
Sbjct:  115 FRGQVLKFERVQAHLANERTWLAWVRTALAALSISFTLLTLSDD---ATKDWLALFLFVVGCLMVVNVLFTFITGWLRYVRVKDVLMLRKQEMSDEFGRFGLSHHARFLSALLVAISIAYLGGS 235          
BLAST of mRNA_H-paniculata_contig19375.4897.1 vs. uniprot
Match: A0A7S2FKJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKJ2_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.400e-32
Identity = 63/106 (59.43%), Postives = 78/106 (73.58%), Query Frame = 1
Query:    1 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLLSLADDLGTVSMDSLALVLGVTFVLCTLFTYLTGWLRYARVKQVLTWQGDQVKARFGRFGLGYQAKFL 318
            FRG++LKFERV AHLANERTWLAWVRTALS L +A SLL+L+DD  + S  +L  V+G   V   LFT++TGWLRY RVK VL     ++   FGRFGL +QA+F+
Sbjct:   91 FRGQVLKFERVQAHLANERTWLAWVRTALSALTIAFSLLTLSDDASSASQLAL-FVMGSCMVANVLFTFVTGWLRYVRVKDVLMLTRSEMSENFGRFGLSHQARFM 195          
BLAST of mRNA_H-paniculata_contig19375.4897.1 vs. uniprot
Match: A0A7S3YD22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YD22_HETAK)

HSP 1 Score: 122 bits (306), Expect = 4.920e-32
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    1 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLLSLADDLGTVSMDSLALVLGVTFVLCTLFTYLTGWLRYARVKQVLTWQGDQVKARFGRFGLGYQAKFLGVALILTVPLY 351
            F+GELLKFERVNAHLANERTWLAWVRTAL+VL  A + L L +D  +        VLG  ++   L TY TGWLRYA+V+++L   G  +K +F RFGL +QA++L V L++T   Y
Sbjct:  120 FQGELLKFERVNAHLANERTWLAWVRTALAVLSSAFTFLGLTEDFAS-GTQIFVFVLGGFYIGNVLLTYGTGWLRYAQVREILGLPGSMIKPKFNRFGLSHQARYLAVLLLVTGVSY 235          
BLAST of mRNA_H-paniculata_contig19375.4897.1 vs. uniprot
Match: A0A7S3K4A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4A5_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.760e-27
Identity = 56/123 (45.53%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLLSLADDLGTVSMDSLALVLGVTFVLCTLFTYLTGWLRYARVKQVLTWQGDQVKARFGRFGLGYQAKFLGVALILTVPLYIAGGIY 369
            FR +L+KFE + AHLANERT+LAW+RTAL+ L ++ SLL+L  D     + +    LG  FV     T+LTGWLR+AR++ +L    +QV   F R GL +QA F+ +   L   LY+ GG Y
Sbjct:   82 FRRQLIKFENIQAHLANERTFLAWIRTALASLSISFSLLALVADASKNWLAACLYALGAAFVFSVFTTFLTGWLRFARIRDILMLAQNQVPTDFHRIGLSHQAYFIAILCGLLTFLYLVGGPY 204          
BLAST of mRNA_H-paniculata_contig19375.4897.1 vs. uniprot
Match: F0YI70_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI70_AURAN)

HSP 1 Score: 108 bits (270), Expect = 5.470e-27
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLLSLADDLGTVSMDSLALVLGVTFVLCTLFTYLTGWLRYARVKQVLTWQGDQVKARFGRFGLGYQAKFLGVALILTVPLYI 354
            FR +L+KFE + AHLANERTWLAWVRT+LS L VA SLL+L  D     +  +  +LG  F++     +LTGWLRYAR++ VL     +V A F R G+ +QA+ +G+  I     Y+
Sbjct:   88 FRKQLIKFENIQAHLANERTWLAWVRTSLSALSVAFSLLTLVGDSRESWLAVVLFLLGSGFIVSVFTAFLTGWLRYARIRDVLMLTKREVPAHFHRIGVRHQARLMGLLFIFLTATYL 205          
BLAST of mRNA_H-paniculata_contig19375.4897.1 vs. uniprot
Match: A0A7S2G4H1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4H1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.000e-22
Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLLSLADDLGTVSMDSLALVLGVTFVLCTLFTYLTGWLRYARVKQVLTWQGDQVKARFGRFGLGYQAKFLGVALILTVPLYIAGG 363
            F+ ++LKF+R+NAHLANERTWLAW+RT  S+L   L+L + A+D  + +       +G   ++   FTY+TGW+RY +VK++L    + +  + GR  L YQ   +   L     +Y  GG
Sbjct:   58 FQKQMLKFDRINAHLANERTWLAWIRTTFSLLSCGLTLQTYANDSSSGTWHWWLFAVGCATIVSMDFTYMTGWIRYGKVKEILQQNKEVLGPKMGRLKLKYQTFLVFGTLCTVAVVYWMGG 178          
BLAST of mRNA_H-paniculata_contig19375.4897.1 vs. uniprot
Match: A0A7S2DFA2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DFA2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.620e-20
Identity = 51/126 (40.48%), Postives = 72/126 (57.14%), Query Frame = 1
Query:    1 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLLSLADDLGTVSMDSLALVL---GVTFVLCTLFTYLTGWLRYARVKQVLTWQGDQVKARFGRFGLGYQAKFLGVALILTVPLYIAGGIY 369
            F+ + +KFERV +HLANERTWLAW+R AL++L  A ++  L D +      +++L L   G+ +VL    T + GWLRY R K +L      +   FG  G+  QA  LG  L+ TV  Y + G Y
Sbjct:   99 FQDQYVKFERVLSHLANERTWLAWIRAALTMLSSAFTIWKLYDSVNDKIHPTISLALYSLGLCYVLVVPLTVVVGWLRYERTKHILGLSKVDIHEYFGSLGVVIQAALLGSVLVFTVGCYWSLGDY 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19375.4897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKT4_ECTSI7.610e-6074.02DUF202 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7S2GM95_9STRA7.770e-3451.59Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2Y0E1_9STRA6.350e-3354.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2WVC3_9STRA1.150e-3252.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FKJ2_9STRA1.400e-3259.43Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3YD22_HETAK4.920e-3253.85Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3K4A5_9STRA1.760e-2745.53Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
F0YI70_AURAN5.470e-2746.61Expressed protein n=1 Tax=Aureococcus anophageffer... [more]
A0A7S2G4H1_9STRA5.000e-2238.84Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2DFA2_9STRA5.620e-2040.48Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19375contigH-paniculata_contig19375:3648..4031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.4
Seed ortholog evalue6.7e-47
Seed eggNOG ortholog2880.D8LKT4
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Domain of unknown function (DUF202)
EggNOG OGs2E55D@1,2SBZQ@2759
Ec32 ortholog descriptionDomain of unknown function DUF202
Ec32 orthologEc-11_005450.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929475.1609097-CDS-H-paniculata_contig19375:3647..40311622929475.1609097-CDS-H-paniculata_contig19375:3647..4031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19375 3648..4031 -
1691480877.663995-CDS-H-paniculata_contig19375:3647..40311691480877.663995-CDS-H-paniculata_contig19375:3647..4031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19375 3648..4031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19375.4897.1prot_H-paniculata_contig19375.4897.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19375 3648..4031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19375.4897.1

>prot_H-paniculata_contig19375.4897.1 ID=prot_H-paniculata_contig19375.4897.1|Name=mRNA_H-paniculata_contig19375.4897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLLSLADDLGTVSM
DSLALVLGVTFVLCTLFTYLTGWLRYARVKQVLTWQGDQVKARFGRFGLG
YQAKFLGVALILTVPLYIAGGIYTVTE*
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mRNA from alignment at H-paniculata_contig19375:3648..4031-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19375.4897.1 ID=mRNA_H-paniculata_contig19375.4897.1|Name=mRNA_H-paniculata_contig19375.4897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=384bp|location=Sequence derived from alignment at H-paniculata_contig19375:3648..4031- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCGGGGAGAGCTCCTCAAGTTCGAGCGAGTGAACGCGCATCTGGCCAA CGAGCGCACCTGGCTGGCGTGGGTTCGCACCGCTCTGTCTGTATTGGGCG TCGCGCTCTCGCTGCTTTCCCTGGCCGATGACCTTGGCACGGTGTCGATG GACTCCTTGGCCCTCGTTCTTGGTGTTACGTTTGTGCTCTGCACCCTGTT CACCTACCTGACGGGGTGGCTACGGTACGCCCGGGTGAAGCAGGTACTGA CGTGGCAGGGGGACCAAGTAAAGGCCCGATTCGGTCGGTTCGGTCTGGGC TACCAGGCGAAGTTCTTGGGGGTCGCACTCATCCTTACGGTGCCTCTGTA CATCGCTGGCGGAATTTACACAGTGACAGAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig19375:3648..4031-

>mRNA_H-paniculata_contig19375.4897.1 ID=mRNA_H-paniculata_contig19375.4897.1|Name=mRNA_H-paniculata_contig19375.4897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig19375:3648..4031- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCGGGGAGAGCTCCTCAAGTTCGAGCGAGTGAACGCGCATCTGGCCAA
CGAGCGCACCTGGCTGGCGTGGGTTCGCACCGCTCTGTCTGTATTGGGCG
TCGCGCTCTCGCTGCTTTCCCTGGCCGATGACCTTGGCACGGTGTCGATG
GACTCCTTGGCCCTCGTTCTTGGTGTTACGTTTGTGCTCTGCACCCTGTT
CACCTACCTGACGGGGTGGCTACGGTACGCCCGGGTGAAGCAGGTACTGA
CGTGGCAGGGGGACCAAGTAAAGGCCCGATTCGGTCGGTTCGGTCTGGGC
TACCAGGCGAAGTTCTTGGGGGTCGCACTCATCCTTACGGTGCCTCTGTA
CATCGCTGGCGGAATTTACACAGTGACAGAATAATTTCGGGGAGAGCTCC
TCAAGTTCGAGCGAGTGAACGCGCATCTGGCCAACGAGCGCACCTGGCTG
GCGTGGGTTCGCACCGCTCTGTCTGTATTGGGCGTCGCGCTCTCGCTGCT
TTCCCTGGCCGATGACCTTGGCACGGTGTCGATGGACTCCTTGGCCCTCG
TTCTTGGTGTTACGTTTGTGCTCTGCACCCTGTTCACCTACCTGACGGGG
TGGCTACGGTACGCCCGGGTGAAGCAGGTACTGACGTGGCAGGGGGACCA
AGTAAAGGCCCGATTCGGTCGGTTCGGTCTGGGCTACCAGGCGAAGTTCT
TGGGGGTCGCACTCATCCTTACGGTGCCTCTGTACATCGCTGGCGGAATT
TACACAGTGACAGAATAA
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