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Homology
BLAST of mRNA_H-paniculata_contig1937.4895.1 vs. uniprot
Match: A0A6H5KST8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST8_9PHAE) HSP 1 Score: 471 bits (1212), Expect = 1.290e-139 Identity = 284/440 (64.55%), Postives = 314/440 (71.36%), Query Frame = 2
Query: 2 GQVCGEMALHGHSAPVTCIASCGLEATDRDLVLSGASDGTALLWSLRRLAASFLTATARRPAARRSPSLVVRGHRGPVTTCAVSDGLGLALTCSDGRALLTSTEGNVLLRAL-KPPSDRKAGGGNXXXXXXXXXXXXXXXSARTFRNPMTPKP--------------PAVRYTACALAEAGYVALAGSRPTAVVLETEGLGDTAATAVPVSHELEVYTVNGRHTARVAGMTRAVRCLSTAGRGELLIVGGDGLMLEVRTTVDLAPLWNLDPYSWATIESFPGGGXXXXXXXXXXREGGGLAAGMGDGKQDWPAVECVELGPNPIAPIVVCVGTADGTLLVQALPDAEEWLRHNMITAVGSMLIKAPGKVFKGTVNTAHSIATKSIRGVGGLVNHTGDIAKEVAGEVGTLVKGVHRAGLIRGVMGYLKRDDNVTESSLQLE 1276
GQVCGEMALHGHSAPVTC+A CGLEA D DLVLSGA+DGTALLWS+RRLA ++++ + RRP ARR P+LVVRGH GPVT CAVSDGLGLALTCSDGRALLT+ EG LRAL P+ G XXXXXXXXXXXXXXX PA RYTACAL E GY ALA SR A + G AA +PV HELEVYTVNG TARV+G++ AVRCLSTAGRGELL+VGGDGLMLEVRT LAP+W+LDP SW TI+ F G G R AG P+VECVELGPNP AP++VCVGT+DG+LLVQALPDAEEWLR+N+I AVGSM+I APGKV KGTVNT HSIATKSIRG GGLVN TGDIAKEV GEVGTL GV RAGLIRGV+GY RD+ E E
Sbjct: 2299 GQVCGEMALHGHSAPVTCLALCGLEAKDSDLVLSGAADGTALLWSIRRLAPNYISDSLRRPTARRCPALVVRGHGGPVTACAVSDGLGLALTCSDGRALLTAIEGTGPLRALGHQPAGSSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAARYTACALGETGYCALASSRLAA----GDEPGAAAAVLLPV-HELEVYTVNGLLTARVSGLSGAVRCLSTAGRGELLVVGGDGLMLEVRTMASLAPVWSLDPESWVTIDCFSGAGGGGGVPRGATR-----GAGAATTPNVPPSVECVELGPNPNAPVLVCVGTSDGSLLVQALPDAEEWLRNNLIVAVGSMIISAPGKVLKGTVNTVHSIATKSIRGAGGLVNTTGDIAKEVVGEVGTLAMGVRRAGLIRGVLGYWNRDEGGLEEEQGRE 2728
BLAST of mRNA_H-paniculata_contig1937.4895.1 vs. uniprot
Match: A0A7S2Y2I7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2I7_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 5.280e-13 Identity = 83/273 (30.40%), Postives = 115/273 (42.12%), Query Frame = 2
Query: 269 ALTCSDGRALLTSTEGNVLLRALK----PPSDRKAGGGNXXXXXXXXXXXXXXXSARTFRNPMTPKPPAVRYTACALAEAGYVALAGSRPTAVVLETEGLGDTAATAVPVSHELEVYTVNGRHTARVAG--MTRAVRCLSTAGRGELLIVGGDGLMLEVRTTVDLAPLWNLDPYSWATIESFPGGGXXXXXXXXXXREGGGLAAGMGDGKQDWPAVECVELGPNPIAPIVVCVGTADGTLLVQALPDAEEWLRHNMITAVGSMLIKAPGKVFK 1069
ALTCS +AL+ + EG+ LL+A+ PP D A N +T C L+ GYV VL LG ++ +LEV+TVNG+ RVAG + R V + + GE++IV G +M+EVR T LA L D + G G G D + V LGPN AP+++ +G DG +L Q+ PD E W +N TAV S L+ AP ++ K
Sbjct: 1 ALTCSRRQALVHAVEGDHLLQAVPLPHLPPIDGVAAVDNPRG-----------------------------FTHCGLSALGYV----------VLAVGYLGQMPPGGEHIT-QLEVWTVNGQ---RVAGSVLRRRVHSMQVSQCGEMIIVAGSQMMVEVRETCSLARLRRFDFQPRLATPTHAGA--------------------QGPGLMD---LTSVTLGPNLGAPVLMVMGAEDGGILFQSFPDMERWWMNNSSTAV-SQLVGAPLRIVK 206
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 67.4 |
| Seed ortholog evalue | 1.8e-08 |
| Seed eggNOG ortholog | 65071.PYU1_T001287 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | platelet formation |
| EggNOG OGs | KOG1787@1,KOG1787@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 2762 |
| Cds size | 1278 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1937.4895.1 >prot_H-paniculata_contig1937.4895.1 ID=prot_H-paniculata_contig1937.4895.1|Name=mRNA_H-paniculata_contig1937.4895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=426bp
MALHGHSAPVTCIASCGLEATDRDLVLSGASDGTALLWSLRRLAASFLTA TARRPAARRSPSLVVRGHRGPVTTCAVSDGLGLALTCSDGRALLTSTEGN VLLRALKPPSDRKAGGGNGGATAGSVGGSGGGGSARTFRNPMTPKPPAVR YTACALAEAGYVALAGSRPTAVVLETEGLGDTAATAVPVSHELEVYTVNG RHTARVAGMTRAVRCLSTAGRGELLIVGGDGLMLEVRTTVDLAPLWNLDP YSWATIESFPGGGGGDGSGGGGGREGGGLAAGMGDGKQDWPAVECVELGP NPIAPIVVCVGTADGTLLVQALPDAEEWLRHNMITAVGSMLIKAPGKVFK GTVNTAHSIATKSIRGVGGLVNHTGDIAKEVAGEVGTLVKGVHRAGLIRG VMGYLKRDDNVTESSLQLEGGDNRR* back to topmRNA from alignment at H-paniculata_contig1937:152..4117+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1937.4895.1 ID=mRNA_H-paniculata_contig1937.4895.1|Name=mRNA_H-paniculata_contig1937.4895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3966bp|location=Sequence derived from alignment at H-paniculata_contig1937:152..4117+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CGGACAGGTATGCGGCGAGATGGCACTCCATGGCCACTCAGCCCCAGTCA
CGTGCATCGCCTCCTGCGGGCTCGAGGCCACCGACCGCGACCTCGTCCTC
TCGGGCGCGAGCGACGGTACTGCCCTGCTGTGGTCACTGCGCCGGCTAGC
GGCCAGCTTCCTGACGGCCACCGCGCGGCGCCCGGCGGCTCGTCGCAGCC
CGTCCCTGGTCGTGCGAGGACACCGGGGTCCCGTGACCACGTGCGCCGTG
AGCGACGGCCTTGGGCTCGCCTTGACCTGCTCCGATGGGCGCGCTCTGCT
GACCTCGACCGAGGGAAACGTGCTATTACGCGCGCTCAAGCCTCCTTCTG
ACAGGAAAGCTGGCGGTGGCAATGGAGGTGCAACTGCCGGCAGCGTGGGC
GGTAGTGGCGGCGGCGGCAGTGCCAGAACATTTAGAAACCCCATGACACC
GAAACCTCCAGCAGTACGCTACACGGCGTGTGCGCTCGCGGAGGCCGGGT
ATGTGGCCCTCGCCGGTTCCCGACCGACCGCTGTGGTACTCGAAACTGAA
GGGCTAGGTGACACGGCGGCAACGGCGGTGCCCGTGTCGCACGAACTGGA
GGTGTACACGGTGAACGGGCGACACACGGCGAGGGTCGCAGGCATGACTC
GCGCTGTTCGATGCCTATCTACCGCCGGGCGCGGCGAACTGTTAATTGTC
GGGGGTGACGGGCTTATGCTGGAGGTGCGGACGACGGTCGATCTGGCGCC
TTTGTGGAACCTGGACCCCTACAGTTGGGCGACCATTGAAAGCTTCCCTG
GAGGCGGGGGAGGTGACGGCAGCGGCGGCGGTGGTGGGAGAGAAGGGGGC
GGATTAGCTGCGGGCATGGGGGATGGGAAGCAGGACTGGCCAGCAGTGGA
GTGTGTGGAGTTGGGGCCTAACCCGATCGCCCCCATCGTGGTGTGTGTGG
GTACTGCGGACGGTACTTTGTTGGTGCAGGTGAGCATGAGGTTATTAATT
TTTGAGGTGTGGTTAGGGTCATGCTTCGGTATTGCTGCCAGAAATGGCTC
ATTTCCGCACGATCCATCCAACTGCAGGGTGTCAGAAGGTAGTGCGCCGT
CCCTTGATTTTGAATTTGTACGGGGAGCAACAGTTTCTTTAGTCTTCGGG
CATGGTGATATCGTCCAGCTAGAGTTGGGCCCTCTATGGCATGTACACGT
GTTTTGCAACCGATGATGCGCAATATTTGTACGAACTAAATCGCCACCGC
ACCAAACAAGCAGCTAACTGTACCGCGCCCTTGCATTTTTTTTTTCAGGC
GTTGCCGGACGCCGAGGAGTGGCTTCGGCATAACATGATCACGGCGGTGG
GGTCGATGCTCATCAAGGCGCCTGGCAAGGTGTTTAAGGGAACGGTCAAC
ACGGCACACTCTATCGCGACCAAGTCCATCCGGGGAGTAGGAGGCCTGGT
CAACCACACGGGGGTGAGGGGCAGAGGAAAAGAAAGAAAGAAAGAGAGGA
GAGGGAGAGATTAGTCGAACCTTGCTTGCAGACCTATTTTGTTCATAAGG
TGGCAATTAACTTGGTTTTTTTTTTCCAAGGGCAGTTTCCGCTTGTATGT
GGACTGCAGATAGTTTCCCGTGTTTCCCATGCTCGTGTTCCATCAAGATT
CGTTTCAGAGCTGACAGATGTACGTCCGTGATTCGGTTGCTTTCACGCAC
TCGAACAGAGACCTCTATGCTGACGTCTCTGCCCTGAACTAAACATGTTT
CATCTCGCTTGATTTTAGTAAGTTGGTTTCAGTTGCCTCTACCTTGAACG
AAACGCTTCCCCCCCCCCAGACAAGAACGAATAGTTGCAGATGGTTTTCA
CAAAAAATTGAAAGTACTCGCCCAAGTTTCGGAATGAGCTCCTGTACTTT
ATGTGCCCCGGACCATCCACGACTGCTATTAATACTCGTAAATTGAATGG
ACAGGGGCGGGTACTTTATTTTTCATGTGTCCGCTCATTCTGAACCTCAG
GCGAATAGTTACAATTTTTAGTGAAAACCATTCATAAGTATTCATGTTTG
TCCGCGGGGTGAAACGCTCGTTCGCATTTGATCTCGAGTGATAGATCCAT
TGATGGGCAAACAATACACGTTTTGACTTTCCTCTCCCCCCAAGTCTGTT
CAGTTTATGGATAATAACCACGTAACCTAGCAGGTTGAAGATACTGGGCA
TACCTCTGTTTTGTTTTATGATTGTTGTCATGATTTCTCCAATACAGTAA
GTTGTGCATCCCTGCTTATACTTGAGACTTGCTATTTAGTCTACGGTACC
ATCCCCCAAAACCAGCCCTCTGTTTGTTGCTGGCATGTGTGATGACAGGA
TATTGCCAAAGAAGTGGCGGGAGAAGTGGGGACGTTAGTCAAGGGCGTGC
ACCGTGCGGGTCTGATTCGCGGCGTGATGGGCTACCTTAAGCGCGATGAC
AACGTGACGGAGTCTTCGTTGCAGCTGGAGGGCGGGGACAACAGGCGCTA
ACGGCCGCGGCTATAATAGAGTACCACGGTACAACATATTTCGCTCACAA
ATTGGCCGATGGCACTTCACGTGTAACGGTAGTTACGGCGGAGGTGGATT
CACCTGATTGGAAGACGTAGTCTTCAAAACAAACCCATACCAACTATTGT
TGATTGCCACATAAAAATTTGGTGGCTTATTGGACAAGGGAAGTTATTGT
ACTGCTCCCGTAGCAGTAGATTGGACATGACTCGAGGATGAATGGGCGGG
CTGACGGGCGGGCAGGAGGAGGGGTGAGGGGTGACTACACTTATCCCGAG
TTGCGCTGTTTAGTTGTCGTCATGAGCCATAGAGGCCGTGAGTCTTCACC
TACTGTGCTGCCACGCGCACCTTATGCGGAAAGCATGTATTGATATTACA
AAAAAGCGCCAGGTCGATATGTTGCACAAAGGGTACGAGTGATGTAAATA
TGATAATAGTGGGTGGGGTTCAATTCCAGCTGTGGGATATAGCGAATTGC
AGCTTTCCCCCGTTTTTTCACAGCGTGGCTCGCGTTCAGTTGGTGTCTGT
TGTTTGCACCTTGTGCCCATCGAGGGTCAACTGAAGACGCGGTAATCTAC
CATAGTAATATCTCACGGTCTTGTAGTGGGTTTTGCCCTTTTTCCCCACA
CTGAGATGACGGGCGTTTTTTATTTTGTCAGGATTTGCTCGTTATTTCTC
ATGCACGTGTTGACGATTTGCTCATTATTTCTCATGTATGTGTTTGGTAT
AAATATTATTAGTGACTATATGAGGGGTTATTCCTTTACATGCGTTTCTG
GGGTTACGATATTGGAGCTTGAGCAATAGTTGCTGACCGTCTTGAACAGA
ACTGTGCAACAAGAGCAGATACGAGTGAGGCGCGACAGGTTGCTTGAGCG
ATGGGTGTGCTGCAGGCGCGTTGTGGTATTGGTGCCTGTATCTTGGTAAC
AGAATACTGACACCTACGCTTGGTGCATTAGCTGTCCGCCCTTGTACGGC
TACTGTCGACGAAATGCTTTTTGATACAAGATGAGTTCGGTGAGTTACGT
GCGGTGGTGTGTCTGTTTCCCCCCCCGTCTGAGCCTTGTGCCTTTTGTTG
TCAAGACAAGACATAGGCATGATATGTTGTATCCTACTCGTGCTATGACA
AGAGCCAATCAATGTGCCCCTATAGCGTACGTAGGAGTAGTTGCTGTCGT
TGTGAGGGAGGGGGTGAACATAGAAATTTCCTCGTGTTCCTCAGCAGCTG
AGATACTTGGTAAATTCAGGCTTGATAAATTGTAATTTTCATAATATATC
CATTGTGCCTCGTGAAGCTGTTATTGGAGCATATCAAAAAGTCGGGTTTT
CGAGGGTTCGCACGTCTAAATGAACATATACGTAAAAAGCCTCTCTTGAC
GAGAGTCCACATGTTATGTTGTGTCCGAATCAACTATGGCATTCCATTTT
CCTTTTTTATACTACC back to topCoding sequence (CDS) from alignment at H-paniculata_contig1937:152..4117+ >mRNA_H-paniculata_contig1937.4895.1 ID=mRNA_H-paniculata_contig1937.4895.1|Name=mRNA_H-paniculata_contig1937.4895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2556bp|location=Sequence derived from alignment at H-paniculata_contig1937:152..4117+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGCACTCCATGGCCACTCAGCCCCAGTCACGTGCATCGCCTCCTGCGG GCTCGAGGCCACCGACCGCGACCTCGTCCTCTCGGGCGCGAGCGACGGTA CTGCCCTGCTGTGGTCACTGCGCCGGCTAGCGGCCAGCTTCCTGACGGCC ACCGCGCGGCGCCCGGCGGCTCGTCGCAGCCCGTCCCTGGTCGTGCGAGG ACACCGGGGTCCCGTGACCACGTGCGCCGTGAGCGACGGCCTTGGGCTCG CCTTGACCTGCTCCGATGGGCGCGCTCTGCTGACCTCGACCGAGGGAAAC GTGCTATTACGCGCGCTCAAGCCTCCTTCTGACAGGAAAGCTGGCGGTGG CAATGGAGGTGCAACTGCCGGCAGCGTGGGCGGTAGTGGCGGCGGCGGCA GTGCCAGAACATTTAGAAACCCCATGACACCGAAACCTCCAGCAGTACGC TACACGGCGTGTGCGCTCGCGGAGGCCGGGTATGTGGCCCTCGCCGGTTC CCGACCGACCGCTGTGGTACTCGAAACTGAAGGGCTAGGTGACACGGCGG CAACGGCGGTGCCCGTGTCGCACGAACTGGAGGTGTACACGGTGAACGGG CGACACACGGCGAGGGTCGCAGGCATGACTCGCGCTGTTCGATGCCTATC TACCGCCGGGCGCGGCGAACTGTTAATTGTCGGGGGTGACGGGCTTATGC TGGAGGTGCGGACGACGGTCGATCTGGCGCCTTTGTGGAACCTGGACCCC TACAGTTGGGCGACCATTGAAAGCTTCCCTGGAGGCGGGGGAGGTGACGG CAGCGGCGGCGGTGGTGGGAGAGAAGGGGGCGGATTAGCTGCGGGCATGG GGGATGGGAAGCAGGACTGGCCAGCAGTGGAGTGTGTGGAGTTGGGGCCT AACCCGATCGCCCCCATCGTGGTGTGTGTGGGTACTGCGGACGGTACTTT GTTGGTGCAGATGGCACTCCATGGCCACTCAGCCCCAGTCACGTGCATCG CCTCCTGCGGGCTCGAGGCCACCGACCGCGACCTCGTCCTCTCGGGCGCG AGCGACGGTACTGCCCTGCTGTGGTCACTGCGCCGGCTAGCGGCCAGCTT CCTGACGGCCACCGCGCGGCGCCCGGCGGCTCGTCGCAGCCCGTCCCTGG TCGTGCGAGGACACCGGGGTCCCGTGACCACGTGCGCCGTGAGCGACGGC CTTGGGCTCGCCTTGACCTGCTCCGATGGGCGCGCTCTGCTGACCTCGAC CGAGGGAAACGTGCTATTACGCGCGCTCAAGCCTCCTTCTGACAGGAAAG CTGGCGGTGGCAATGGAGGTGCAACTGCCGGCAGCGTGGGCGGTAGTGGC GGCGGCGGCAGTGCCAGAACATTTAGAAACCCCATGACACCGAAACCTCC AGCAGTACGCTACACGGCGTGTGCGCTCGCGGAGGCCGGGTATGTGGCCC TCGCCGGTTCCCGACCGACCGCTGTGGTACTCGAAACTGAAGGGCTAGGT GACACGGCGGCAACGGCGGTGCCCGTGTCGCACGAACTGGAGGTGTACAC GGTGAACGGGCGACACACGGCGAGGGTCGCAGGCATGACTCGCGCTGTTC GATGCCTATCTACCGCCGGGCGCGGCGAACTGTTAATTGTCGGGGGTGAC GGGCTTATGCTGGAGGTGCGGACGACGGTCGATCTGGCGCCTTTGTGGAA CCTGGACCCCTACAGTTGGGCGACCATTGAAAGCTTCCCTGGAGGCGGGG GAGGTGACGGCAGCGGCGGCGGTGGTGGGAGAGAAGGGGGCGGATTAGCT GCGGGCATGGGGGATGGGAAGCAGGACTGGCCAGCAGTGGAGTGTGTGGA GTTGGGGCCTAACCCGATCGCCCCCATCGTGGTGTGTGTGGGTACTGCGG ACGGTACTTTGTTGGTGCAGGCGTTGCCGGACGCCGAGGAGTGGCTTCGG CATAACATGATCACGGCGGTGGGGTCGATGCTCATCAAGGCGCCTGGCAA GGTGTTTAAGGGAACGGTCAACACGGCACACTCTATCGCGACCAAGTCCA TCCGGGGAGTAGGAGGCCTGGTCAACCACACGGGGGCGTTGCCGGACGCC GAGGAGTGGCTTCGGCATAACATGATCACGGCGGTGGGGTCGATGCTCAT CAAGGCGCCTGGCAAGGTGTTTAAGGGAACGGTCAACACGGCACACTCTA TCGCGACCAAGTCCATCCGGGGAGTAGGAGGCCTGGTCAACCACACGGGG GATATTGCCAAAGAAGTGGCGGGAGAAGTGGGGACGTTAGTCAAGGGCGT GCACCGTGCGGGTCTGATTCGCGGCGTGATGGGCTACCTTAAGCGCGATG ACAACGTGACGGAGTCTTCGTTGCAGCTGGAGGGCGGGGACAACAGGCGC TAAGATATTGCCAAAGAAGTGGCGGGAGAAGTGGGGACGTTAGTCAAGGG CGTGCACCGTGCGGGTCTGATTCGCGGCGTGATGGGCTACCTTAAGCGCG ATGACAACGTGACGGAGTCTTCGTTGCAGCTGGAGGGCGGGGACAACAGG CGCTAA back to top
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