prot_H-paniculata_contig1937.4895.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1937.4895.1
Unique Nameprot_H-paniculata_contig1937.4895.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length426
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1937.4895.1 vs. uniprot
Match: A0A6H5KST8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST8_9PHAE)

HSP 1 Score: 456 bits (1174), Expect = 1.870e-141
Identity = 278/434 (64.06%), Postives = 308/434 (70.97%), Query Frame = 0 
Query:    1 MALHGHSAPVTCIASCGLEATDRDLVLSGASDGTALLWSLRRLAASFLTATARRPAARRSPSLVVRGHRGPVTTCAVSDGLGLALTCSDGRALLTSTEGNVLLRAL-KPPSDRKAGGGNXXXXXXXXXXXXXXXSARTFRNPMTPKP--------------PAVRYTACALAEAGYVALAGSRPTAVVLETEGLGDTAATAVPVSHELEVYTVNGRHTARVAGMTRAVRCLSTAGRGELLIVGGDGLMLEVRTTVDLAPLWNLDPYSWATIESFPGGGXXXXXXXXXXREGGGLAAGMGDGKQDWPAVECVELGPNPIAPIVVCVGTADGTLLVQALPDAEEWLRHNMITAVGSMLIKAPGKVFKGTVNTAHSIATKSIRGVGGLVNHTGDIAKEVAGEVGTLVKGVHRAGLIRGVMGYLKRDDNVTESSLQLE 419
            MALHGHSAPVTC+A CGLEA D DLVLSGA+DGTALLWS+RRLA ++++ + RRP ARR P+LVVRGH GPVT CAVSDGLGLALTCSDGRALLT+ EG   LRAL   P+    G   XXXXXXXXXXXXXXX                           PA RYTACAL E GY ALA SR  A     +  G  AA  +PV HELEVYTVNG  TARV+G++ AVRCLSTAGRGELL+VGGDGLMLEVRT   LAP+W+LDP SW TI+ F G G          R      AG        P+VECVELGPNP AP++VCVGT+DG+LLVQALPDAEEWLR+N+I AVGSM+I APGKV KGTVNT HSIATKSIRG GGLVN TGDIAKEV GEVGTL  GV RAGLIRGV+GY  RD+   E     E
Sbjct: 2305 MALHGHSAPVTCLALCGLEAKDSDLVLSGAADGTALLWSIRRLAPNYISDSLRRPTARRCPALVVRGHGGPVTACAVSDGLGLALTCSDGRALLTAIEGTGPLRALGHQPAGSSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAARYTACALGETGYCALASSRLAA----GDEPGAAAAVLLPV-HELEVYTVNGLLTARVSGLSGAVRCLSTAGRGELLVVGGDGLMLEVRTMASLAPVWSLDPESWVTIDCFSGAGGGGGVPRGATR-----GAGAATTPNVPPSVECVELGPNPNAPVLVCVGTSDGSLLVQALPDAEEWLRNNLIVAVGSMIISAPGKVLKGTVNTVHSIATKSIRGAGGLVNTTGDIAKEVVGEVGTLAMGVRRAGLIRGVLGYWNRDEGGLEEEQGRE 2728
[Close]
BLAST of mRNA_H-paniculata_contig1937.4895.1 vs. uniprot
Match: A0A7S2Y2I7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2I7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.780e-13
Identity = 83/273 (30.40%), Postives = 115/273 (42.12%), Query Frame = 0 
Query:   84 ALTCSDGRALLTSTEGNVLLRALK----PPSDRKAGGGNXXXXXXXXXXXXXXXSARTFRNPMTPKPPAVRYTACALAEAGYVALAGSRPTAVVLETEGLGDTAATAVPVSHELEVYTVNGRHTARVAG--MTRAVRCLSTAGRGELLIVGGDGLMLEVRTTVDLAPLWNLDPYSWATIESFPGGGXXXXXXXXXXREGGGLAAGMGDGKQDWPAVECVELGPNPIAPIVVCVGTADGTLLVQALPDAEEWLRHNMITAVGSMLIKAPGKVFK 350
            ALTCS  +AL+ + EG+ LL+A+     PP D  A   N                                +T C L+  GYV          VL    LG        ++ +LEV+TVNG+   RVAG  + R V  +  +  GE++IV G  +M+EVR T  LA L   D        +  G                      G G  D   +  V LGPN  AP+++ +G  DG +L Q+ PD E W  +N  TAV S L+ AP ++ K
Sbjct:    1 ALTCSRRQALVHAVEGDHLLQAVPLPHLPPIDGVAAVDNPRG-----------------------------FTHCGLSALGYV----------VLAVGYLGQMPPGGEHIT-QLEVWTVNGQ---RVAGSVLRRRVHSMQVSQCGEMIIVAGSQMMVEVRETCSLARLRRFDFQPRLATPTHAGA--------------------QGPGLMD---LTSVTLGPNLGAPVLMVMGAEDGGILFQSFPDMERWWMNNSSTAV-SQLVGAPLRIVK 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1937.4895.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KST8_9PHAE1.870e-14164.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2Y2I7_9STRA1.780e-1330.40Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..335
e-value: 1.1E-12
score: 49.2
IPR001680WD40 repeatPFAMPF00400WD40coord: 3..39
e-value: 0.022
score: 15.6
NoneNo IPR availablePANTHERPTHR13743BEIGE/BEACH-RELATEDcoord: 3..319
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 3..322

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1937contigH-paniculata_contig1937:171..2652 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1937.4895.1mRNA_H-paniculata_contig1937.4895.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1937 152..4117 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1937.4895.1 ID=prot_H-paniculata_contig1937.4895.1|Name=mRNA_H-paniculata_contig1937.4895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=426bp
MALHGHSAPVTCIASCGLEATDRDLVLSGASDGTALLWSLRRLAASFLTA
TARRPAARRSPSLVVRGHRGPVTTCAVSDGLGLALTCSDGRALLTSTEGN
VLLRALKPPSDRKAGGGNGGATAGSVGGSGGGGSARTFRNPMTPKPPAVR
YTACALAEAGYVALAGSRPTAVVLETEGLGDTAATAVPVSHELEVYTVNG
RHTARVAGMTRAVRCLSTAGRGELLIVGGDGLMLEVRTTVDLAPLWNLDP
YSWATIESFPGGGGGDGSGGGGGREGGGLAAGMGDGKQDWPAVECVELGP
NPIAPIVVCVGTADGTLLVQALPDAEEWLRHNMITAVGSMLIKAPGKVFK
GTVNTAHSIATKSIRGVGGLVNHTGDIAKEVAGEVGTLVKGVHRAGLIRG
VMGYLKRDDNVTESSLQLEGGDNRR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
IPR036322WD40_repeat_dom_sf