mRNA_H-paniculata_contig1936.4893.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1936.4893.1
Unique NamemRNA_H-paniculata_contig1936.4893.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: D8LUB7_ECTSI (Intraflagellar transport protein 172 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB7_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 1.440e-76
Identity = 133/160 (83.12%), Postives = 146/160 (91.25%), Query Frame = 1
Query:    1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDRDMARRKQS-TEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQ 477
            IY   EL+I EY RNE  ILGAVRTEHIS HLLSV LS+K PRR DRD+ARR+Q+ TEGTKTVAYLLDAQTINIK+L+TNAT+SV+HDS++DWLELNSRADLLLFRDRRRRLHLYN+RTQ RGTLL+YCTYVQWVPDSDVVVAQNR ALCVWYNIHAPDQ
Sbjct:  367 IYQDRELTIGEYARNE-GILGAVRTEHISAHLLSVCLSDKPPRRGDRDLARRRQNVTEGTKTVAYLLDAQTINIKDLVTNATSSVSHDSKIDWLELNSRADLLLFRDRRRRLHLYNLRTQTRGTLLNYCTYVQWVPDSDVVVAQNRGALCVWYNIHAPDQ 525          
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: F0YKY3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKY3_AURAN)

HSP 1 Score: 211 bits (537), Expect = 5.060e-60
Identity = 108/163 (66.26%), Postives = 131/163 (80.37%), Query Frame = 1
Query:    1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDR----DMARRKQSTEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQ 477
            +YHA EL++VEYG NE   LG VRT+HISGHLLSVR++E+ P  +D     D  R + S    K +AYLLDAQTINIK+L+T ++T+V+ DS++DWLELN RA LLLFRDRRR+LHLY++ TQ R TLL+YCTYVQWVPDSDVVVAQNR+ LCVWYNIH PDQ
Sbjct:  390 VYHAGELALVEYGCNEA--LGTVRTDHISGHLLSVRINER-PNPTDGNPPLDDERERSSWPDNKKIAYLLDAQTINIKDLVTGSSTTVSQDSKIDWLELNGRASLLLFRDRRRQLHLYDIETQTRTTLLNYCTYVQWVPDSDVVVAQNRNNLCVWYNIHTPDQ 549          
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: F0Y092_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y092_AURAN)

HSP 1 Score: 210 bits (534), Expect = 1.280e-59
Identity = 108/163 (66.26%), Postives = 131/163 (80.37%), Query Frame = 1
Query:    1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDR----DMARRKQSTEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQ 477
            +YHA EL++VEYG NE   LG VRT+HISGHLLSVR++E+ P  +D     D  R + S    K +AYLLDAQTINIK+L+T ++T+V+ DS++DWLELN RA LLLFRDRRR+LHLY++ TQ R TLL+YCTYVQWVPDSDVVVAQNR+ LCVWYNIH PDQ
Sbjct:  436 VYHAGELALVEYGCNET--LGTVRTDHISGHLLSVRINER-PSPTDGSPPLDDERERSSGLDNKKIAYLLDAQTINIKDLVTGSSTTVSQDSKIDWLELNGRASLLLFRDRRRQLHLYDIETQTRTTLLNYCTYVQWVPDSDVVVAQNRNNLCVWYNIHTPDQ 595          
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: A0A835YVD3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVD3_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.370e-59
Identity = 108/172 (62.79%), Postives = 131/172 (76.16%), Query Frame = 1
Query:    1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRS---DRDMARRKQSTEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQARAQNKQYRG 507
            ++ A ELS+VEYG NEV    AVRT+HIS HLLSVRL+E+ PR     D D  R  +     K +AYLLDAQT+N+KNL+T A+ +VNHD R+DWLELNSR +LLLFRD+RR+LHL+NV  Q R TLL+ C YVQWVPDSDVVVAQ+R++LCVWYNIHAPDQ    N Q +G
Sbjct:  414 VFAAGELSVVEYGHNEVA--AAVRTDHISAHLLSVRLNERPPRTGAPDDPDTPRADEHDGQNKKMAYLLDAQTVNVKNLVTQASVTVNHDCRIDWLELNSRGNLLLFRDKRRQLHLFNVDNQTRTTLLNLCNYVQWVPDSDVVVAQSRTSLCVWYNIHAPDQVT--NHQIKG 581          
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: A0A7S4E4W1_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4W1_9STRA)

HSP 1 Score: 209 bits (532), Expect = 2.380e-59
Identity = 104/159 (65.41%), Postives = 130/159 (81.76%), Query Frame = 1
Query:    1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDRDMARRKQSTEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQ 477
            +YHA EL++VEYG NE    G VRT++ISGHLLSVR++E  P R+D D A        +K +AYLLDAQTINIK+L+T ++++V+ +S++DWLELN RA+LLLFRD+RR+LHLY+VRTQ R TLL+YCTYVQWVP SDVVVAQNR +LCVWYNIH PDQ
Sbjct:  435 VYHAGELTLVEYGCNEA--CGTVRTDYISGHLLSVRMNEPQPTRADDDFA-------NSKKMAYLLDAQTINIKDLVTGSSSTVSQNSKIDWLELNGRANLLLFRDKRRQLHLYDVRTQARTTLLTYCTYVQWVPHSDVVVAQNRGSLCVWYNIHTPDQ 584          
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: A0A835Z5T0_9STRA (Intraflagellar transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5T0_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.520e-58
Identity = 108/172 (62.79%), Postives = 131/172 (76.16%), Query Frame = 1
Query:    1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRS---DRDMARRKQSTEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQARAQNKQYRG 507
            ++ A ELS+VEYG NEV    AVRT+HIS HLLSVRL+E+ PR     D D  R  +     K +AYLLDAQT+N+KNL+T A+ +VNHD R+DWLELNSR +LLLFRD+RR+LHL+NV  Q R TLL+ C YVQWVPDSDVVVAQ+R++LCVWYNIHAPDQ    N Q +G
Sbjct:  318 VFAAGELSVVEYGHNEVA--AAVRTDHISAHLLSVRLNERPPRTGAPDDPDTPRADEHDGQNKKMAYLLDAQTVNVKNLVTQASVTVNHDCRIDWLELNSRGNLLLFRDKRRQLHLFNVDNQTRTTLLNLCNYVQWVPDSDVVVAQSRTSLCVWYNIHAPDQVT--NHQIKG 485          
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: A0A7S2W0W8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0W8_9STRA)

HSP 1 Score: 202 bits (513), Expect = 8.550e-57
Identity = 100/159 (62.89%), Postives = 127/159 (79.87%), Query Frame = 1
Query:    1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDRDMARRKQSTEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQ 477
            +YHA ELS++EYG NE   LG+VRTE+ISGHLLSVR++E    R+         + E +K +AYLLD QT+ +K+L+T  + ++NHDS++DW+ELN+R +LLLFRD+RR LHLY+V  QIR TLL++CTYVQWVPDSDVVVAQNRS LCVWYNIHAPDQ
Sbjct:  407 VYHAGELSLIEYGSNEP--LGSVRTEYISGHLLSVRINE----RAVGGDGAAPDTEEDSKQIAYLLDTQTVALKDLVTQTSATINHDSKIDWIELNTRGNLLLFRDKRRHLHLYDVDQQIRHTLLNFCTYVQWVPDSDVVVAQNRSNLCVWYNIHAPDQ 559          
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: A0A5D6XF22_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Pythiaceae TaxID=4782 RepID=A0A5D6XF22_9STRA)

HSP 1 Score: 191 bits (486), Expect = 3.660e-53
Identity = 99/169 (58.58%), Postives = 129/169 (76.33%), Query Frame = 1
Query:    1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDRDMARRKQ---------STEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQA 480
            +Y A ELS++EYG+N+  ILG+VRTEH+S HLLSVR++E+  + +D   A  K           T  +K VA+LLD QTI++K+L  +A+T++NHDSR+DWLELNSR  LLLFRD+RR+LHL+++  Q R TLL+YC YVQWVPDSDVVVAQNR+ L VWYNI APD+A
Sbjct:  424 VYQAGELSLIEYGQND--ILGSVRTEHLSTHLLSVRINERAQQLADAGSAHSKTLPTAGSGGPETAESKKVAFLLDLQTISVKDLHLHASTTINHDSRIDWLELNSRGSLLLFRDKRRQLHLFDLDAQRRSTLLNYCNYVQWVPDSDVVVAQNRTNLSVWYNIRAPDKA 590          
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: F0WBZ0_9STRA (Intraflagellar transport protein 172 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBZ0_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.720e-52
Identity = 100/164 (60.98%), Postives = 125/164 (76.22%), Query Frame = 1
Query:    1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDRDMARRKQSTE----GTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQA 480
            +Y A EL+++EYGRNEV  LG VRTEH++ HLLS+R++E+ P   +    R KQS        K +AYLLD QTI+IK+L T+ + +VNHD R+DWLELN R +LLLFRD+RR+LHL++V  Q R TLL+YC YVQWVPDSDVVVAQNRS L VWYNI APD+A
Sbjct:  409 VYQAGELTLIEYGRNEV--LGCVRTEHLNPHLLSIRINER-PSLEEVISQRNKQSDRVMALTNKKIAYLLDLQTISIKDLHTHTSATVNHDCRIDWLELNGRGNLLLFRDKRRQLHLFDVEAQHRVTLLNYCNYVQWVPDSDVVVAQNRSNLSVWYNIRAPDKA 569          
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: A0A482ST81_9ARCH (ANAPC4_WD40 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ST81_9ARCH)

HSP 1 Score: 189 bits (479), Expect = 3.140e-52
Identity = 96/159 (60.38%), Postives = 126/159 (79.25%), Query Frame = 1
Query:    1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDRDMARRKQSTEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQ 477
            IY+A E +IVEYG +EV  LG+VRT++++ H++S+R++E+ P  +D             K +A+LLDAQTI+IK+L+T A+ +V+HDSR+DWLELNSRA LLLFRD+RR LHL+N+ TQ R  LL++CTYVQWVP SDVVVAQNR+ LCVWYNIHAPDQ
Sbjct:  342 IYYAGEANIVEYGIDEV--LGSVRTQYMTSHVISLRINER-PHDTD------------NKKIAFLLDAQTISIKDLVTQASITVSHDSRIDWLELNSRASLLLFRDKRRYLHLFNLETQSRSQLLNFCTYVQWVPGSDVVVAQNRNTLCVWYNIHAPDQ 485          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUB7_ECTSI1.440e-7683.13Intraflagellar transport protein 172 n=1 Tax=Ectoc... [more]
F0YKY3_AURAN5.060e-6066.26Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0Y092_AURAN1.280e-5966.26Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A835YVD3_9STRA1.370e-5962.79Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A7S4E4W1_9STRA2.380e-5965.41Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A835Z5T0_9STRA1.520e-5862.79Intraflagellar transport protein n=1 Tax=Tribonema... [more]
A0A7S2W0W8_9STRA8.550e-5762.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5D6XF22_9STRA3.660e-5358.58Uncharacterized protein (Fragment) n=2 Tax=Pythiac... [more]
F0WBZ0_9STRA1.720e-5260.98Intraflagellar transport protein 172 putative n=1 ... [more]
A0A482ST81_9ARCH3.140e-5260.38ANAPC4_WD40 domain-containing protein n=1 Tax=arch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1936contigH-paniculata_contig1936:678..2939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score261.9
Seed ortholog evalue2.1e-67
Seed eggNOG ortholog2880.D8LUB7
Preferred nameIFT172
KEGG koko:K19676
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000226,GO:0001501,GO:0001654,GO:0001655,GO:0001822,GO:0001838,GO:0001841,GO:0001843,GO:0001894,GO:0001895,GO:0001947,GO:0002009,GO:0002119,GO:0002164,GO:0003002,GO:0003007,GO:0003143,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005815,GO:0005856,GO:0005871,GO:0005875,GO:0005929,GO:0005930,GO:0006355,GO:0006357,GO:0006508,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0008134,GO:0008150,GO:0008152,GO:0008285,GO:0008544,GO:0008589,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009798,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009953,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010970,GO:0014020,GO:0015630,GO:0016043,GO:0016331,GO:0016485,GO:0019219,GO:0019222,GO:0019538,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021915,GO:0021953,GO:0022008,GO:0022607,GO:0022611,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0030990,GO:0030992,GO:0031122,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031514,GO:0031982,GO:0032006,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0035050,GO:0035148,GO:0035239,GO:0035295,GO:0035735,GO:0035869,GO:0036064,GO:0036126,GO:0040024,GO:0042073,GO:0042127,GO:0042592,GO:0042995,GO:0043009,GO:0043010,GO:0043053,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045494,GO:0045880,GO:0045892,GO:0045934,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048565,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048736,GO:0048793,GO:0048856,GO:0048869,GO:0048871,GO:0050678,GO:0050680,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0055115,GO:0055123,GO:0060021,GO:0060041,GO:0060173,GO:0060249,GO:0060255,GO:0060271,GO:0060322,GO:0060348,GO:0060429,GO:0060562,GO:0060606,GO:0060972,GO:0061371,GO:0061525,GO:0065007,GO:0065008,GO:0070925,GO:0070986,GO:0071704,GO:0071840,GO:0072001,GO:0072175,GO:0072359,GO:0080090,GO:0097014,GO:0097223,GO:0097225,GO:0097228,GO:0097435,GO:0097542,GO:0097598,GO:0097708,GO:0097729,GO:0097730,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901564,GO:1902531,GO:1902679,GO:1903506,GO:1903507,GO:1905515,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.cilium assembly
EggNOG OGsKOG3616@1,KOG3616@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons5
Model size534
Cds size534
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1936.4893.1prot_H-paniculata_contig1936.4893.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1936 678..2939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929474.2744136-CDS-H-paniculata_contig1936:677..7311622929474.2744136-CDS-H-paniculata_contig1936:677..731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1936 678..731 +
1691480877.17477-CDS-H-paniculata_contig1936:677..7311691480877.17477-CDS-H-paniculata_contig1936:677..731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1936 678..731 +
1622929474.2887702-CDS-H-paniculata_contig1936:1221..13291622929474.2887702-CDS-H-paniculata_contig1936:1221..1329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1936 1222..1329 +
1691480877.1887634-CDS-H-paniculata_contig1936:1221..13291691480877.1887634-CDS-H-paniculata_contig1936:1221..1329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1936 1222..1329 +
1622929474.2996242-CDS-H-paniculata_contig1936:1696..17561622929474.2996242-CDS-H-paniculata_contig1936:1696..1756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1936 1697..1756 +
1691480877.1977186-CDS-H-paniculata_contig1936:1696..17561691480877.1977186-CDS-H-paniculata_contig1936:1696..1756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1936 1697..1756 +
1622929474.3205836-CDS-H-paniculata_contig1936:2175..22911622929474.3205836-CDS-H-paniculata_contig1936:2175..2291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1936 2176..2291 +
1691480877.2062488-CDS-H-paniculata_contig1936:2175..22911691480877.2062488-CDS-H-paniculata_contig1936:2175..2291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1936 2176..2291 +
1622929474.3359044-CDS-H-paniculata_contig1936:2743..29391622929474.3359044-CDS-H-paniculata_contig1936:2743..2939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1936 2744..2939 +
1691480877.217114-CDS-H-paniculata_contig1936:2743..29391691480877.217114-CDS-H-paniculata_contig1936:2743..2939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1936 2744..2939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1936.4893.1

>prot_H-paniculata_contig1936.4893.1 ID=prot_H-paniculata_contig1936.4893.1|Name=mRNA_H-paniculata_contig1936.4893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDRDMA
RRKQSTEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRAD
LLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCV
WYNIHAPDQARAQNKQYRGCLGRREQE*
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mRNA from alignment at H-paniculata_contig1936:678..2939+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1936.4893.1 ID=mRNA_H-paniculata_contig1936.4893.1|Name=mRNA_H-paniculata_contig1936.4893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2262bp|location=Sequence derived from alignment at H-paniculata_contig1936:678..2939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTACCACGCAAGTGAGCTGAGCATCGTCGAGTATGGACGGAACGAGGT GAGGGTGTGGGGGTTGCAGTTTGTGTTGATATCTCTGTCTTCAGGTTCAG GTGTGTGAGAGGGATTCAATCTGCAGTGGTATACACTCATCAGCAAAACT AAATCAGTAAGGGAGGGAACGGTATGGAGGTTCGAGGAGAGGAGCATGTG AATTGTGTGTCGAGGACCTGGTACAACAATGTGGCTGAAAAATGGTATCA TCAACAAATGTTCTGGCAATTGTGTGTGTTGCTTCACACGGAGCTCAGTA CGTCAGGAATCACTGTCATGATTTGTGGTGTATGGCATGTGCCGCACTTA CCTTTCAGAGGATACCCTCGGCATGTTGAAAACACGCTCTGGGTTGCTGG AACGGCTGGTATCTACTAATGTTTCCTATAGACGAAGTGACACCGAGAAG GCAGCCCGCCATCTGCGACATTTTATATATATATATATATATATATATAT ATATACGTATATATTTTCGCTGTCTGCTTCCCCATATGCGGTAGATACTT GGTGCGGTGCGAACGGAGCATATCAGCGGGCACTTGCTGTCCGTGCGACT GAGCGAGAAGCATCCTCGTCGGAGCGATCGAGACATGGCCAGGAGGAAAC AGGTGAGGGAGCAAGCGGGAAAAAGTCGCTTGCGGGAAAGAGTACGAGTG AGAGGAAAGCAGAGATGACGGCCAGTGCTCCTGATAGTGGCGCCCCACAG CAAGTACACTTTTCATTGTGGGCGATGCTTGGTTGCCTGGTGCTGCCTAA AATCGAAAAAAAAGGAAGTAAGAATGAAGGATAATCGCGAAGCACACCAC GAGGGCCGCGACTACGACAGCGACGCTAAATACACCTGTTTTTCTATCTC AAACCTGCACGGTGCCGCATGGGCAACACTACCGTAGATGAAATAGTGGT GCGTAGTGGAAATTAAGGTGTATCGAGTTTCGTTTCCTGTTGTTTGTTCT CCTCTCATTCTTTACGGAGTCGACGGAGGGGACGAAGACGGTGGCTTACC TGCTGGATGCGCAGACTATCAATATCAAGGTGAGAAAATTATGCTCGGCA GAAGTCTTGATCAAACGTGTTGTAGGAATTCGTTTCCGTTTGGGATTAAG CGGAGGGAGGCAGGGGAGGTGACGAGTGATGAGCTGTTATTTGTGGTTGG TGTTTGGGGCTTCAAGGTTACCGTTTGCTCCGGGGTTCGGTGCTGTTTCG TACGTGGCTACTTTTTTTCGTTTCCATTTATACACGTCTTCGTATTGGCG TCCAATATGTCGTTTGTCCATGACTTATGTTATGAGTTCAAAGAGTCATA CCAAGCACAAGAGCACTTAGTTTGGTAAACAGCCACCGTGTAGCGCTGTA CAATACACTCAGAGAAACCAGAATGGGTTCATGGCAGTCGACCACACCCG CCAGTCCAATTTTGATCGGATTTTTCCTGTTCAACATGTCCCCCACAGAA CCTGATAACCAACGCCACGACGTCAGTGAACCATGATAGCCGTGTGGACT GGCTGGAGCTGAATAGCAGAGCAGATTTGCTTCTCTTTAGGGATCGTCGC CGAAGGCTTCATCTGTGAGCTTACGTGATATATACGATAAAATTTTATAC AGCCGTAGATTTTCCGTCTCCGTTAACGATCTGCGGGCTCCTAAGTCGCA ATTCCCCGCGATTGGCACCTTTGGTTGCGCAAAAAACTATTGTCCAAGCT GTAGTCTACCTCGAGCAACATCCGGTGCGAGAAGTCCGTGCGAGAAGTAT TAAGTGTATCGTAAGCTTGCCCCTTCAAGGATATGTTGTGCGAGTGTGTA CTGTCTGTGGTTTTCGGATGCTGGTAATGTCCTTCCGGTTGCCGCTGAGA AGCAGCCACGTTCTCGTCCCTGCGATGCGAAAGATTTTAGACTGCGTGTC CCACGACTGCGCAGCACAAAGACAATGCACTATGCACTGTATTCCTACTA ACATCTACGTCGTTCATATCACAACGAAATAAACCAACACCTCACAAACC AACAATATCTTGGCAGGTACAACGTGCGAACACAGATTCGGGGAACACTC CTAAGCTACTGCACGTACGTCCAGTGGGTACCGGACAGCGACGTAGTCGT GGCGCAAAATAGGAGTGCTTTGTGCGTCTGGTACAACATACATGCCCCCG ATCAGGCGAGAGCTCAAAATAAACAATACCGAGGTTGTTTGGGGAGGCGA GAACAGGAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1936:678..2939+

>mRNA_H-paniculata_contig1936.4893.1 ID=mRNA_H-paniculata_contig1936.4893.1|Name=mRNA_H-paniculata_contig1936.4893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig1936:678..2939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTACCACGCAAGTGAGCTGAGCATCGTCGAGTATGGACGGAACGAGGT
GAGGATCTACCACGCAAGTGAGCTGAGCATCGTCGAGTATGGACGGAACG
AGGTGAGGATACTTGGTGCGGTGCGAACGGAGCATATCAGCGGGCACTTG
CTGTCCGTGCGACTGAGCGAGAAGCATCCTCGTCGGAGCGATCGAGACAT
GGCCAGGAGGAAACAGATACTTGGTGCGGTGCGAACGGAGCATATCAGCG
GGCACTTGCTGTCCGTGCGACTGAGCGAGAAGCATCCTCGTCGGAGCGAT
CGAGACATGGCCAGGAGGAAACAGTCGACGGAGGGGACGAAGACGGTGGC
TTACCTGCTGGATGCGCAGACTATCAATATCAAGTCGACGGAGGGGACGA
AGACGGTGGCTTACCTGCTGGATGCGCAGACTATCAATATCAAGAACCTG
ATAACCAACGCCACGACGTCAGTGAACCATGATAGCCGTGTGGACTGGCT
GGAGCTGAATAGCAGAGCAGATTTGCTTCTCTTTAGGGATCGTCGCCGAA
GGCTTCATCTAACCTGATAACCAACGCCACGACGTCAGTGAACCATGATA
GCCGTGTGGACTGGCTGGAGCTGAATAGCAGAGCAGATTTGCTTCTCTTT
AGGGATCGTCGCCGAAGGCTTCATCTGTACAACGTGCGAACACAGATTCG
GGGAACACTCCTAAGCTACTGCACGTACGTCCAGTGGGTACCGGACAGCG
ACGTAGTCGTGGCGCAAAATAGGAGTGCTTTGTGCGTCTGGTACAACATA
CATGCCCCCGATCAGGCGAGAGCTCAAAATAAACAATACCGAGGTTGTTT
GGGGAGGCGAGAACAGGAGTGAGTACAACGTGCGAACACAGATTCGGGGA
ACACTCCTAAGCTACTGCACGTACGTCCAGTGGGTACCGGACAGCGACGT
AGTCGTGGCGCAAAATAGGAGTGCTTTGTGCGTCTGGTACAACATACATG
CCCCCGATCAGGCGAGAGCTCAAAATAAACAATACCGAGGTTGTTTGGGG
AGGCGAGAACAGGAGTGA
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