mRNA_H-paniculata_contig1936.4893.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: D8LUB7_ECTSI (Intraflagellar transport protein 172 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB7_ECTSI) HSP 1 Score: 258 bits (660), Expect = 1.440e-76 Identity = 133/160 (83.12%), Postives = 146/160 (91.25%), Query Frame = 1
Query: 1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDRDMARRKQS-TEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQ 477
IY EL+I EY RNE ILGAVRTEHIS HLLSV LS+K PRR DRD+ARR+Q+ TEGTKTVAYLLDAQTINIK+L+TNAT+SV+HDS++DWLELNSRADLLLFRDRRRRLHLYN+RTQ RGTLL+YCTYVQWVPDSDVVVAQNR ALCVWYNIHAPDQ
Sbjct: 367 IYQDRELTIGEYARNE-GILGAVRTEHISAHLLSVCLSDKPPRRGDRDLARRRQNVTEGTKTVAYLLDAQTINIKDLVTNATSSVSHDSKIDWLELNSRADLLLFRDRRRRLHLYNLRTQTRGTLLNYCTYVQWVPDSDVVVAQNRGALCVWYNIHAPDQ 525
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: F0YKY3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKY3_AURAN) HSP 1 Score: 211 bits (537), Expect = 5.060e-60 Identity = 108/163 (66.26%), Postives = 131/163 (80.37%), Query Frame = 1
Query: 1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDR----DMARRKQSTEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQ 477
+YHA EL++VEYG NE LG VRT+HISGHLLSVR++E+ P +D D R + S K +AYLLDAQTINIK+L+T ++T+V+ DS++DWLELN RA LLLFRDRRR+LHLY++ TQ R TLL+YCTYVQWVPDSDVVVAQNR+ LCVWYNIH PDQ
Sbjct: 390 VYHAGELALVEYGCNEA--LGTVRTDHISGHLLSVRINER-PNPTDGNPPLDDERERSSWPDNKKIAYLLDAQTINIKDLVTGSSTTVSQDSKIDWLELNGRASLLLFRDRRRQLHLYDIETQTRTTLLNYCTYVQWVPDSDVVVAQNRNNLCVWYNIHTPDQ 549
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: F0Y092_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y092_AURAN) HSP 1 Score: 210 bits (534), Expect = 1.280e-59 Identity = 108/163 (66.26%), Postives = 131/163 (80.37%), Query Frame = 1
Query: 1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDR----DMARRKQSTEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQ 477
+YHA EL++VEYG NE LG VRT+HISGHLLSVR++E+ P +D D R + S K +AYLLDAQTINIK+L+T ++T+V+ DS++DWLELN RA LLLFRDRRR+LHLY++ TQ R TLL+YCTYVQWVPDSDVVVAQNR+ LCVWYNIH PDQ
Sbjct: 436 VYHAGELALVEYGCNET--LGTVRTDHISGHLLSVRINER-PSPTDGSPPLDDERERSSGLDNKKIAYLLDAQTINIKDLVTGSSTTVSQDSKIDWLELNGRASLLLFRDRRRQLHLYDIETQTRTTLLNYCTYVQWVPDSDVVVAQNRNNLCVWYNIHTPDQ 595
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: A0A835YVD3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVD3_9STRA) HSP 1 Score: 207 bits (526), Expect = 1.370e-59 Identity = 108/172 (62.79%), Postives = 131/172 (76.16%), Query Frame = 1
Query: 1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRS---DRDMARRKQSTEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQARAQNKQYRG 507
++ A ELS+VEYG NEV AVRT+HIS HLLSVRL+E+ PR D D R + K +AYLLDAQT+N+KNL+T A+ +VNHD R+DWLELNSR +LLLFRD+RR+LHL+NV Q R TLL+ C YVQWVPDSDVVVAQ+R++LCVWYNIHAPDQ N Q +G
Sbjct: 414 VFAAGELSVVEYGHNEVA--AAVRTDHISAHLLSVRLNERPPRTGAPDDPDTPRADEHDGQNKKMAYLLDAQTVNVKNLVTQASVTVNHDCRIDWLELNSRGNLLLFRDKRRQLHLFNVDNQTRTTLLNLCNYVQWVPDSDVVVAQSRTSLCVWYNIHAPDQVT--NHQIKG 581
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: A0A7S4E4W1_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4W1_9STRA) HSP 1 Score: 209 bits (532), Expect = 2.380e-59 Identity = 104/159 (65.41%), Postives = 130/159 (81.76%), Query Frame = 1
Query: 1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDRDMARRKQSTEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQ 477
+YHA EL++VEYG NE G VRT++ISGHLLSVR++E P R+D D A +K +AYLLDAQTINIK+L+T ++++V+ +S++DWLELN RA+LLLFRD+RR+LHLY+VRTQ R TLL+YCTYVQWVP SDVVVAQNR +LCVWYNIH PDQ
Sbjct: 435 VYHAGELTLVEYGCNEA--CGTVRTDYISGHLLSVRMNEPQPTRADDDFA-------NSKKMAYLLDAQTINIKDLVTGSSSTVSQNSKIDWLELNGRANLLLFRDKRRQLHLYDVRTQARTTLLTYCTYVQWVPHSDVVVAQNRGSLCVWYNIHTPDQ 584
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: A0A835Z5T0_9STRA (Intraflagellar transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5T0_9STRA) HSP 1 Score: 207 bits (526), Expect = 1.520e-58 Identity = 108/172 (62.79%), Postives = 131/172 (76.16%), Query Frame = 1
Query: 1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRS---DRDMARRKQSTEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQARAQNKQYRG 507
++ A ELS+VEYG NEV AVRT+HIS HLLSVRL+E+ PR D D R + K +AYLLDAQT+N+KNL+T A+ +VNHD R+DWLELNSR +LLLFRD+RR+LHL+NV Q R TLL+ C YVQWVPDSDVVVAQ+R++LCVWYNIHAPDQ N Q +G
Sbjct: 318 VFAAGELSVVEYGHNEVA--AAVRTDHISAHLLSVRLNERPPRTGAPDDPDTPRADEHDGQNKKMAYLLDAQTVNVKNLVTQASVTVNHDCRIDWLELNSRGNLLLFRDKRRQLHLFNVDNQTRTTLLNLCNYVQWVPDSDVVVAQSRTSLCVWYNIHAPDQVT--NHQIKG 485
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: A0A7S2W0W8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0W8_9STRA) HSP 1 Score: 202 bits (513), Expect = 8.550e-57 Identity = 100/159 (62.89%), Postives = 127/159 (79.87%), Query Frame = 1
Query: 1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDRDMARRKQSTEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQ 477
+YHA ELS++EYG NE LG+VRTE+ISGHLLSVR++E R+ + E +K +AYLLD QT+ +K+L+T + ++NHDS++DW+ELN+R +LLLFRD+RR LHLY+V QIR TLL++CTYVQWVPDSDVVVAQNRS LCVWYNIHAPDQ
Sbjct: 407 VYHAGELSLIEYGSNEP--LGSVRTEYISGHLLSVRINE----RAVGGDGAAPDTEEDSKQIAYLLDTQTVALKDLVTQTSATINHDSKIDWIELNTRGNLLLFRDKRRHLHLYDVDQQIRHTLLNFCTYVQWVPDSDVVVAQNRSNLCVWYNIHAPDQ 559
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: A0A5D6XF22_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Pythiaceae TaxID=4782 RepID=A0A5D6XF22_9STRA) HSP 1 Score: 191 bits (486), Expect = 3.660e-53 Identity = 99/169 (58.58%), Postives = 129/169 (76.33%), Query Frame = 1
Query: 1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDRDMARRKQ---------STEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQA 480
+Y A ELS++EYG+N+ ILG+VRTEH+S HLLSVR++E+ + +D A K T +K VA+LLD QTI++K+L +A+T++NHDSR+DWLELNSR LLLFRD+RR+LHL+++ Q R TLL+YC YVQWVPDSDVVVAQNR+ L VWYNI APD+A
Sbjct: 424 VYQAGELSLIEYGQND--ILGSVRTEHLSTHLLSVRINERAQQLADAGSAHSKTLPTAGSGGPETAESKKVAFLLDLQTISVKDLHLHASTTINHDSRIDWLELNSRGSLLLFRDKRRQLHLFDLDAQRRSTLLNYCNYVQWVPDSDVVVAQNRTNLSVWYNIRAPDKA 590
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: F0WBZ0_9STRA (Intraflagellar transport protein 172 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBZ0_9STRA) HSP 1 Score: 189 bits (481), Expect = 1.720e-52 Identity = 100/164 (60.98%), Postives = 125/164 (76.22%), Query Frame = 1
Query: 1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDRDMARRKQSTE----GTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQA 480
+Y A EL+++EYGRNEV LG VRTEH++ HLLS+R++E+ P + R KQS K +AYLLD QTI+IK+L T+ + +VNHD R+DWLELN R +LLLFRD+RR+LHL++V Q R TLL+YC YVQWVPDSDVVVAQNRS L VWYNI APD+A
Sbjct: 409 VYQAGELTLIEYGRNEV--LGCVRTEHLNPHLLSIRINER-PSLEEVISQRNKQSDRVMALTNKKIAYLLDLQTISIKDLHTHTSATVNHDCRIDWLELNGRGNLLLFRDKRRQLHLFDVEAQHRVTLLNYCNYVQWVPDSDVVVAQNRSNLSVWYNIRAPDKA 569
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Match: A0A482ST81_9ARCH (ANAPC4_WD40 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ST81_9ARCH) HSP 1 Score: 189 bits (479), Expect = 3.140e-52 Identity = 96/159 (60.38%), Postives = 126/159 (79.25%), Query Frame = 1
Query: 1 IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDRDMARRKQSTEGTKTVAYLLDAQTINIKNLITNATTSVNHDSRVDWLELNSRADLLLFRDRRRRLHLYNVRTQIRGTLLSYCTYVQWVPDSDVVVAQNRSALCVWYNIHAPDQ 477
IY+A E +IVEYG +EV LG+VRT++++ H++S+R++E+ P +D K +A+LLDAQTI+IK+L+T A+ +V+HDSR+DWLELNSRA LLLFRD+RR LHL+N+ TQ R LL++CTYVQWVP SDVVVAQNR+ LCVWYNIHAPDQ
Sbjct: 342 IYYAGEANIVEYGIDEV--LGSVRTQYMTSHVISLRINER-PHDTD------------NKKIAFLLDAQTISIKDLVTQASITVSHDSRIDWLELNSRASLLLFRDKRRYLHLFNLETQSRSQLLNFCTYVQWVPGSDVVVAQNRNTLCVWYNIHAPDQ 485 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1936.4893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1936.4893.1 >prot_H-paniculata_contig1936.4893.1 ID=prot_H-paniculata_contig1936.4893.1|Name=mRNA_H-paniculata_contig1936.4893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp IYHASELSIVEYGRNEVRILGAVRTEHISGHLLSVRLSEKHPRRSDRDMAback to top mRNA from alignment at H-paniculata_contig1936:678..2939+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1936.4893.1 ID=mRNA_H-paniculata_contig1936.4893.1|Name=mRNA_H-paniculata_contig1936.4893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2262bp|location=Sequence derived from alignment at H-paniculata_contig1936:678..2939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1936:678..2939+ >mRNA_H-paniculata_contig1936.4893.1 ID=mRNA_H-paniculata_contig1936.4893.1|Name=mRNA_H-paniculata_contig1936.4893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig1936:678..2939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |