mRNA_H-paniculata_contig19356.4891.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19356.4891.1
Unique NamemRNA_H-paniculata_contig19356.4891.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19356.4891.1 vs. uniprot
Match: D8LDX3_ECTSI (Exocyst subunit Exo70 family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDX3_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 9.040e-48
Identity = 83/102 (81.37%), Postives = 95/102 (93.14%), Query Frame = 1 
Query:    7 QMRRVNEAIMYFEKWPTLKSQRDAIRGLEELSNIAAKECIDEFNRLMRTVGPAVQFQAQTNTFESVDTLSDNVSSSLAAIGECLTLLNHDKQLRQNYTAARR 312
            +MRR+++AI YF KWP+LKSQ++AI+GLEELS++AAKECIDEFNRLMRTVGPAVQFQ QTNTFESV+TLSDNV+ SLAAIGECLTLL H  QLRQNYTAARR
Sbjct:  109 EMRRIDDAIAYFRKWPSLKSQKEAIKGLEELSSMAAKECIDEFNRLMRTVGPAVQFQTQTNTFESVNTLSDNVAQSLAAIGECLTLLRHSGQLRQNYTAARR 210
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BLAST of mRNA_H-paniculata_contig19356.4891.1 vs. uniprot
Match: A0A835YN31_9STRA (Exocyst subunit Exo70 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN31_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 7.380e-19
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:   10 MRRVNEAIMYFEKWPTLKSQRDAIRGLEELSNIAAKECIDEFNRLMRTVGPAVQFQAQTNTFESVDTLSDNVSSSLAAIGECLTLLNHDKQLRQNYTAARR 312
            +RRV EA+ +F   P+L+SQ  A+ GL  L N AA EC++E+ RLMR VGP+VQF A  + +E V  LS+  ++ LAA+   L LL     LRQ Y +ARR
Sbjct:   79 VRRVLEAMAFFRALPSLRSQGTALSGLTALCNTAAAECLEEYGRLMRAVGPSVQFNAAADAYEPVAPLSEAGAAGLAAVQGALELLEKRSALRQAYASARR 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19356.4891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDX3_ECTSI9.040e-4881.37Exocyst subunit Exo70 family protein n=2 Tax=Ectoc... [more]
A0A835YN31_9STRA7.380e-1947.52Exocyst subunit Exo70 family protein n=1 Tax=Tribo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19356contigH-paniculata_contig19356:514..3034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19356.4891.1prot_H-paniculata_contig19356.4891.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19356 514..3025 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929474.0712054-CDS-H-paniculata_contig19356:513..6481622929474.0712054-CDS-H-paniculata_contig19356:513..648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19356 514..648 -
1691480877.0819533-CDS-H-paniculata_contig19356:513..6481691480877.0819533-CDS-H-paniculata_contig19356:513..648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19356 514..648 -
1622929474.089627-CDS-H-paniculata_contig19356:2857..30251622929474.089627-CDS-H-paniculata_contig19356:2857..3025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19356 2858..3025 -
1691480877.0949068-CDS-H-paniculata_contig19356:2857..30251691480877.0949068-CDS-H-paniculata_contig19356:2857..3025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19356 2858..3025 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929474.1223106-UTR-H-paniculata_contig19356:3025..30341622929474.1223106-UTR-H-paniculata_contig19356:3025..3034Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19356 3026..3034 -
1691480877.1050735-UTR-H-paniculata_contig19356:3025..30341691480877.1050735-UTR-H-paniculata_contig19356:3025..3034Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19356 3026..3034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19356.4891.1

>prot_H-paniculata_contig19356.4891.1 ID=prot_H-paniculata_contig19356.4891.1|Name=mRNA_H-paniculata_contig19356.4891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MRRVNEAIMYFEKWPTLKSQRDAIRGLEELSNIAAKECIDEFNRLMRTVG
PAVQFQAQTNTFESVDTLSDNVSSSLAAIGECLTLLNHDKQLRQNYTAAR
R
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mRNA from alignment at H-paniculata_contig19356:514..3034-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19356.4891.1 ID=mRNA_H-paniculata_contig19356.4891.1|Name=mRNA_H-paniculata_contig19356.4891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2521bp|location=Sequence derived from alignment at H-paniculata_contig19356:514..3034- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTGGCAGATGCGAAGAGTCAACGAGGCCATTATGTACTTCGAGAAGTG
GCCCACCCTCAAATCCCAAAGAGACGCCATCAGGGGCCTGGAAGAGCTGT
CCAACATCGCTGCCAAGGAGTGCATCGATGAGTTTAACCGGCTCATGCGG
ACGGTGGGGCCAGCGGTGCAATTCCAGGTTAGTTCGCGCCCCCAGCCGTC
GTCATTTATTTTTTGTACTTTATTTTTTGTACTTTATTTTTTGGCTGCTG
GTAGTAGTACGTAGGCTAGTAGCTCTGACCCCGTCACTACCTGTAAGGAG
TAGACAGGCGTCGTCATTATCATAATGATCGTCATCGTCCATAGCGCTTT
AGCTCTAGCCATTCACGAACCGAACCTATGAACAAAAAGCAAGGTAGATT
TTCCTGACGACCCTAGTCGTGAATAATTATCAATAGGTCTTTCTCCAGAA
TGCTTCACCCATTTATATGCAAAGCTGAGGGGGGGCGGAGGGAGGGTCAC
GAGTGATGCCTTGTGATCTTTAGTTCAGTGTAGAACAAGGATAGTCAAGT
ATGGGGCTGTTTTTCGAACAACTGGATAATGAATAAGCCCTACGTAGCTG
ATTGAGGAAATATGGACTCCTGAAATGGTGGCGATGGTTGTTTCAAGGTA
GATGTTCAACTCTGCAACTCGAGAATGTGGGCACGAGTACATGAAGCAAA
TATCAACTTCTGACCGCATTCCATTTTTTTTTTTTTCATTTATTGTTATA
TTCCATTTTTTTTTTCCTGCTTATATTCCTCCATTTGCCTGTATTTTCCT
GTATGTTTCTGTATTCTCGCTTACTGTATTAAAAGCAGTAAATTGTGATG
CGCCCTTTCGGTATACATAACAATGGAGCCACGATGAACGCACCTAAAAA
ACCAACAGAGGTTTAAGTTTTAAGATTTTGCCACGGCACTCGACTTACAG
AAGAGAAACACAGGTTTCTGTAAAATAAGAACATTGATTGATATGTGATC
ACTGTGATCAATTGACCGATCGGATATAACATAGGGGCACTATGTACAAG
GTTAATTAACCCTGATTGGATATATAATTTTGGAGTTCGCAAGACGAAAA
TTCCTTTGGTAAAATTTGATGTTGGCCTTGTATAGCTAGCAGTGAGCTCC
GCATCCTGGACCCCAGTATACCTCCACCAACGTTTCGTTAAAAATAAAAA
AAAAGTATTTTGTCACAGCTTGTGACCATTCGTATCCCTCAAAAAGCAGA
CGAACTTTGAAATGGAAATTCTGTTGTAACGAGAGAGACGTTGGTGTGTG
TGAGTTGGGGTCCGGGATGAGGACGTCACTGATACCTATAAAGAATCATC
AAATCCAAGTTTGCACACATAAAACGCGACTAATTACTCGTGTGAAACAA
GTAATTGAGACTCCTGGAACCTCATCAAAAACGAAGCTCCCTGTCTCTGC
GATCCTGTTTATATATATATATATATATATATATACGCCTTTAGGCCGTT
TGCATGCATGAATATTGTATGTTACAGCCGATCCCTTCTCCAGCTCGACA
CTTGTCGGGGGTCGGGATTTTGGTGTTAACGAGGCACCATCGCCAAATAG
TCGTTTCAGCCAACTCGTTAGTCCTTGCATGTGTGGAATTTTGCGAAAGG
AATTGGTGATAATATACGCAACTGAGATTAGATTTGAGGTACCTCAAAAG
GGATATACGATGATGATGCAGTTCTTTTGCGAGCTATATAGACAGCTACT
AAGGATGGCAAGTGGGTTGGTTGAATCATGAGCGAAGCTTGCTTTGCGTT
GATTTTTTTTTTTTTTTTCTGCCACGCGTTTACGTGCTGATGAACACACA
CACACACACACGGTAGTAAAGAAAAAAGAACGTTGAACCGTAGATGCAAA
AAGGGCTCATAAGAGCCGCCGTTTAGTTAGTTACTTCGAGTTAGAGGGAT
TAACAACGCTTGTATGTGCGCAGCTTCTCCATCCCCTGACGGGCAAAAAA
CGTTCGACAACATCATAAAAACGTTTTCTTTTTTGCCCACTGTGACAAAA
AAAGGTATAGAGAGATACTGTTTGCCACAGGGCCCTAGGCGAAGGTCATT
TCGCGTAATTCTCGGTTTCTTTGCTATTTATTTTCATGGACGTGAGCTCT
AGCTCTATACTACTATCTCTGAATCTAGACAAATACGCTGCTCATATTTT
TCAGTATTTTTTTTTTTATGGATAAGAGGGAGGGAGGGAGGGAGGGAGGG
TTGAATGACCTGATGGCTGAAAACAATACTGTGAAGTTGGCTTGCAACGC
TACACGAGCTAGACGTCAACCTACGCGGCGTTTTTTTTTCATCTTTGTAT
TTAACATTTCCATATGTGTGCGCGTATATACTACAGGCCCAGACAAACAC
ATTCGAGTCGGTGGACACGCTGAGTGACAACGTCTCTTCGAGCCTGGCGG
CTATCGGAGAGTGTCTCACGCTCCTGAACCACGACAAGCAACTCAGACAG
AACTACACCGCCGCAAGAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig19356:514..3034-

>mRNA_H-paniculata_contig19356.4891.1 ID=mRNA_H-paniculata_contig19356.4891.1|Name=mRNA_H-paniculata_contig19356.4891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig19356:514..3034- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAAGAGTCAACGAGGCCATTATGTACTTCGAGAAGTGGCCCACCCT
CAAATCCCAAAGAGACGCCATCAGGGGCCTGGAAGAGCTGTCCAACATCG
CTGCCAAGGAGTGCATCGATGAGTTTAACCGGCTCATGCGGACGGTGGGG
CCAGCGGTGCAATTCCAGATGCGAAGAGTCAACGAGGCCATTATGTACTT
CGAGAAGTGGCCCACCCTCAAATCCCAAAGAGACGCCATCAGGGGCCTGG
AAGAGCTGTCCAACATCGCTGCCAAGGAGTGCATCGATGAGTTTAACCGG
CTCATGCGGACGGTGGGGCCAGCGGTGCAATTCCAGGCCCAGACAAACAC
ATTCGAGTCGGTGGACACGCTGAGTGACAACGTCTCTTCGAGCCTGGCGG
CTATCGGAGAGTGTCTCACGCTCCTGAACCACGACAAGCAACTCAGACAG
AACTACACCGCCGCAAGAAGGGCCCAGACAAACACATTCGAGTCGGTGGA
CACGCTGAGTGACAACGTCTCTTCGAGCCTGGCGGCTATCGGAGAGTGTC
TCACGCTCCTGAACCACGACAAGCAACTCAGACAGAACTACACCGCCGCA
AGAAGG
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