mRNA_H-paniculata_contig19306.4877.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig19306.4877.1 vs. uniprot
Match: D7FLW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW2_ECTSI) HSP 1 Score: 329 bits (843), Expect = 2.150e-102 Identity = 221/431 (51.28%), Postives = 256/431 (59.40%), Query Frame = 1
Query: 1 VSHILWSRTGGRVSYLADLCRSLIGVDRRGAGGGASVVSGGVGGFGEVGEDGTWRLRLNEFAHVLKLASMVPVGVEGELQRRLDELPYTARQESVVLRAVCVCMVGGVGETDLLLDLLTNVAPFKEYWAAVVAQHSSPVST------RXXXXXXXXXRRSSCNAGINSSPC---SPASDIISPPPIGGSAKG-----------------------YPEAEAGEGKDEECRGRARSDVVHRLDGDGAERRGGIVQEEGRRGAGEDRGILLVVLVVLLLLHVSFRFLSDKGTSPLV------VCSDFDKAVG----PSSGRSALMAILAVLEAGGFLRVSNEGKKVICDDLMLVDQVYASMPFKLRKSLHKAAAKWLSDRHRSSFRDRADVMPVLISHLTQAHEEARAQAMLAVLKVCTFCFGVESWLLCHTR 1167
VSHILW+RT GRVSYLADLCRSL G R AG G+S GG FGEVGEDGTWRLRLNEFAHVLKLAS VP GVEG LQRRLDELPY ARQ VVLR VCV +V GVGE DLLL LLTNVAPFKEYW AVV+QH S +T R RRS + +N+SP +PA+D S G SA +AEA + ++ V + A + E G GA +DR + S + T+P S DK+ G P +G AL + LA+LEAGGFLR+ GK +CDD+ML+DQVYAS PFKLRKSLHK AA+W+SDRHR FRDRADVMP+LI+HLTQAHEEARAQAMLAVLKV F ++ W+L H R
Sbjct: 188 VSHILWARTRGRVSYLADLCRSLTGTSRGAAGSGSS---GGTS-FGEVGEDGTWRLRLNEFAHVLKLASRVPAGVEGALQRRLDELPYNARQ--VVLRVVCVTVVAGVGEIDLLLHLLTNVAPFKEYWKAVVSQHESGEATTRRRSSRSRRGTGTPPRRSLTLSPVNTSPSVASTPATDAAS---TGASAVARAAVERRDIARGGXXXXXXXXXXXXDAEAAPPEAAIATRQSPPRVQSMSEAAAAAMTEFLRDEAGAAGAEQDRKRTRSDVPGRPTARDSGGDAGLRTTTPASPATARRAASAIDKSAGVDSEPGAGEEALRSCLAMLEAGGFLRLCEGGKTFVCDDMMLMDQVYASTPFKLRKSLHKEAAQWISDRHRRDFRDRADVMPMLINHLTQAHEEARAQAMLAVLKVLGGRF-LDRWVLEHVR 608
BLAST of mRNA_H-paniculata_contig19306.4877.1 vs. uniprot
Match: A0A6H5KFZ7_9PHAE (Guanylate cyclase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFZ7_9PHAE) HSP 1 Score: 327 bits (839), Expect = 2.080e-97 Identity = 221/417 (53.00%), Postives = 250/417 (59.95%), Query Frame = 1
Query: 1 VSHILWSRTGGRVSYLADLCRSLIGVDRRGAGGGASVVSGGVGG--FGEVGEDGTWRLRLNEFAHVLKLASMVPVGVEGELQRRLDELPYTARQESVVLRAVCVCMVGGVGETDLLLDLLTNVAPFKEYWAAVVAQHSS---PV---STRXXXXXXXXXRRSSCNAGINSSPC---SPASDIISPPPIGGSAKGYPEA-----------------------EAGEGKDEECRGRARSDVVHRLDGDGAERRGGIVQEEGRRGAGEDRGILLVVLVVLLLLHVSFRFLSDKGTSPLV------VCSDFDKAVG----PSSGRSALMAILAVLEAGGFLRVSNEGKKVICDDLMLVDQVYASMPFKLRKSLHKAAAKWLSDRHRSSFRDRADVMPVLISHLTQAHEEARAQAMLAVLKV 1119
VSHILW+RT GRVSYLADLCRSL G R G A+ SG GG FGEVGEDGTWRLRLNEFAHVLKLAS VP GVEG LQRRLDELPYTARQ VVLR VCV +V GVGE DLLL LLTNVAPFKEYW AVV+QH S P S+R RRS + +N+SP +PA+D S A+G E EA E ++R V + A + E G GA +DR + L S + TSP S DK+ G P +G AL LA+LEAGGFLR+ GK +CDD+ML+DQVYAS PFKLRKSLHK AA+W+SDRHR FRDRADVMP+LI+HLTQAHEEARAQAMLAVLKV
Sbjct: 1145 VSHILWARTRGRVSYLADLCRSLTGTSR----GAAAAGSGSSGGTSFGEVGEDGTWRLRLNEFAHVLKLASRVPAGVEGALQRRLDELPYTARQ--VVLRVVCVTVVAGVGEMDLLLHLLTNVAPFKEYWKAVVSQHESGEAPTRRRSSRFRRRTGTPPRRSLTLSPVNTSPSVARTPATDAASTL-ASAVARGAIERRDILRGGXXXXXXXXXXXXXXXXEAAPPTAEISTRQSRPRVQSMSEAAAAAMTEFLRDEAGAAGAEQDRKRTRSDVPGRLTARDSGGDAGLRTTSPSSPATARRATSAIDKSAGAHSEPGAGEEALRTCLAMLEAGGFLRLCEGGKTFVCDDMMLMDQVYASTPFKLRKSLHKEAAQWISDRHRRDFRDRADVMPMLINHLTQAHEEARAQAMLAVLKV 1554 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19306.4877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19306.4877.1 >prot_H-paniculata_contig19306.4877.1 ID=prot_H-paniculata_contig19306.4877.1|Name=mRNA_H-paniculata_contig19306.4877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=393bp VSHILWSRTGGRVSYLADLCRSLIGVDRRGAGGGASVVSGGVGGFGEVGEback to top mRNA from alignment at H-paniculata_contig19306:850..4452+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig19306.4877.1 ID=mRNA_H-paniculata_contig19306.4877.1|Name=mRNA_H-paniculata_contig19306.4877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3603bp|location=Sequence derived from alignment at H-paniculata_contig19306:850..4452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig19306:850..4452+ >mRNA_H-paniculata_contig19306.4877.1 ID=mRNA_H-paniculata_contig19306.4877.1|Name=mRNA_H-paniculata_contig19306.4877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2358bp|location=Sequence derived from alignment at H-paniculata_contig19306:850..4452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |