mRNA_H-paniculata_contig19303.4876.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19303.4876.1
Unique NamemRNA_H-paniculata_contig19303.4876.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19303.4876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19303contigH-paniculata_contig19303:4110..4656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size547
Cds size114
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19303.4876.1prot_H-paniculata_contig19303.4876.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19303 4345..4458 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929472.4629593-UTR-H-paniculata_contig19303:4109..43441622929472.4629593-UTR-H-paniculata_contig19303:4109..4344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19303 4110..4344 +
1691480876.4630377-UTR-H-paniculata_contig19303:4109..43441691480876.4630377-UTR-H-paniculata_contig19303:4109..4344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19303 4110..4344 +
1622929472.5211375-UTR-H-paniculata_contig19303:4458..46561622929472.5211375-UTR-H-paniculata_contig19303:4458..4656Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19303 4459..4656 +
1691480876.480709-UTR-H-paniculata_contig19303:4458..46561691480876.480709-UTR-H-paniculata_contig19303:4458..4656Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19303 4459..4656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929472.477716-CDS-H-paniculata_contig19303:4344..44581622929472.477716-CDS-H-paniculata_contig19303:4344..4458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19303 4345..4458 +
1691480876.4724605-CDS-H-paniculata_contig19303:4344..44581691480876.4724605-CDS-H-paniculata_contig19303:4344..4458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19303 4345..4458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19303.4876.1

>prot_H-paniculata_contig19303.4876.1 ID=prot_H-paniculata_contig19303.4876.1|Name=mRNA_H-paniculata_contig19303.4876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
MALEELQSTVSKLTFNLFGSETERKVIHYRGWPLCSR*
back to top

mRNA from alignment at H-paniculata_contig19303:4110..4656+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19303.4876.1 ID=mRNA_H-paniculata_contig19303.4876.1|Name=mRNA_H-paniculata_contig19303.4876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=547bp|location=Sequence derived from alignment at H-paniculata_contig19303:4110..4656+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTGCTAAGGCCCAGTTTAGGGTTGTTCAGACAGAGAATACACCACGCA
CCCCCCACGTCATTATCCTCTTCTATAAATTGGTGCTTTCTTGGACAGCC
TAATCGTGTGTAATGCTGCTGTACCAAGTCTGGCTATAACATTCGCGATT
GAGAGGAGCAACTGTTAAGGATAGGTGCCAGAGGGGGTGGCGAGGCGCTA
GATAGGCGTATTGCTCCTGTGATTAACCGACAGCTATGGCGCTTGAGGAG
CTGCAATCCACCGTGAGCAAGCTCACGTTTAACCTCTTTGGGTCCGAAAC
GGAGAGGAAGGTGATCCACTATCGAGGCTGGCCCCTATGTTCCAGATGAT
TAATATGGAGAAGAATTAATTCTTCTGGGTGATGATTCCGCGTTCCTGCC
GTTTCGCAAATTCTTGGTTCCCTCTCCGCTGAATACGTATTTGAGTAACC
TCTTGCATAACCACACTGCTAATTGTGAAAGCATGCCACGTGTTAGCACA
GCATACTATTGTTTGATTTTGTCGGTTCTGAGTTACCTCAAGAACGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig19303:4110..4656+

>mRNA_H-paniculata_contig19303.4876.1 ID=mRNA_H-paniculata_contig19303.4876.1|Name=mRNA_H-paniculata_contig19303.4876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at H-paniculata_contig19303:4110..4656+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCTTGAGGAGCTGCAATCCACCGTGAGCAAGCTCACGTTTAACCT
CTTTGGGTCCGAAACGGAGAGGAAGGTGATCCACTATCGAGGCTGGCCCC
TATGTTCCAGATGAATGGCGCTTGAGGAGCTGCAATCCACCGTGAGCAAG
CTCACGTTTAACCTCTTTGGGTCCGAAACGGAGAGGAAGGTGATCCACTA
TCGAGGCTGGCCCCTATGTTCCAGATGA
back to top