mRNA_H-paniculata_contig19302.4875.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19302.4875.1
Unique NamemRNA_H-paniculata_contig19302.4875.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19302.4875.1 vs. uniprot
Match: A0A6H5L771_9PHAE (P4Hc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L771_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.280e-27
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 1
Query:    1 AVFFSYLGPDGRTDVGRTRHSGCPIIKGTKWIATLWMRLGVTDARGWQYYDPSGMPSA 174
            A FFSYLGPD +TD GRTRHSGCPII+GTKWIATLWMR+GVT  + WQYYDPSG+PSA
Sbjct:  407 AAFFSYLGPDNKTDKGRTRHSGCPIIEGTKWIATLWMRMGVTAEKSWQYYDPSGLPSA 464          
BLAST of mRNA_H-paniculata_contig19302.4875.1 vs. uniprot
Match: A0A7S3XMW1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMW1_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 2.000e-17
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    1 AVFFSYLGPDGRTDVGRTRHSGCPIIKGTKWIATLWMRLGVTDARGWQYYDPSGMPS 171
            A FFSY+G DG  D G T HSGCPI +G KWIATLWMR GV+D   W  +DP+G P+
Sbjct:  239 ATFFSYIGDDGEWDDGLTLHSGCPIKEGEKWIATLWMRQGVSDEAPWSSFDPAGNPA 295          
BLAST of mRNA_H-paniculata_contig19302.4875.1 vs. uniprot
Match: A0A7R9U6N7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6N7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.420e-16
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 AVFFSYLGPDGRTDVGRTRHSGCPIIKGTKWIATLWMRLGVTDARGWQYYDPSGMP 168
            +VFFSYLGPDGR D G T HSGCPI +G+K+IAT+W R GV+ A  W   DP G P
Sbjct:  383 SVFFSYLGPDGRMDDGLTEHSGCPITEGSKYIATMWFRKGVSSAWPWTKSDPQGYP 438          
BLAST of mRNA_H-paniculata_contig19302.4875.1 vs. uniprot
Match: A0A836CGT5_9STRA (P4Hc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGT5_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.450e-16
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    1 AVFFSYLGPDG-RTDVGRTRHSGCPIIKGTKWIATLWMRLGVTDARGWQYYDPSGMP 168
            AVFFSY   +  R D GRTRHSGCP+I+GTKWIATLWMR GV+ +  W+ +DP G P
Sbjct:  374 AVFFSYYDSEKERVDNGRTRHSGCPVIEGTKWIATLWMRKGVSKSVPWERFDPQGRP 430          
BLAST of mRNA_H-paniculata_contig19302.4875.1 vs. uniprot
Match: A0A835YYR1_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 5.300e-16
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    1 AVFFSYLGPDGR-TDVGRTRHSGCPIIKGTKWIATLWMRLGVTDARGWQYYDPSGMP 168
            A FF+Y   +   TD GRTRHSGCPII GTKWIATLWMR GV+ A+ + ++DP G P
Sbjct:  434 AAFFAYYDKERNVTDSGRTRHSGCPIISGTKWIATLWMRNGVSKAKSYMHFDPEGRP 490          
BLAST of mRNA_H-paniculata_contig19302.4875.1 vs. uniprot
Match: A0A6U4DUF5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DUF5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.760e-15
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 AVFFSYLGPDGRTDVGRTRHSGCPIIKGTKWIATLWMRLGVTDARGWQYYDPSGMPSA 174
            +VFFSY+G DGR D G T HSGCPI +G+K+IAT+W R GV+  R W   DP G P A
Sbjct:  398 SVFFSYMGQDGRMDDGLTEHSGCPIFEGSKFIATMWFRKGVSKDRKWFQSDPLGYPKA 455          
BLAST of mRNA_H-paniculata_contig19302.4875.1 vs. uniprot
Match: A0A812U7S5_SYMMI (P4ha1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U7S5_SYMMI)

HSP 1 Score: 73.6 bits (179), Expect = 2.520e-14
Identity = 32/56 (57.14%), Postives = 35/56 (62.50%), Query Frame = 1
Query:    1 AVFFSYLGPDGRTDVGRTRHSGCPIIKGTKWIATLWMRLGVTDARGWQYYDPSGMP 168
            A  F+Y   DG  D G T HSGCP++KG KWI TLWMR GV     W  YDPSG P
Sbjct:  178 ATVFAYRDNDGYMDHGFTEHSGCPVLKGEKWITTLWMRDGVDAKHTWAMYDPSGEP 233          
BLAST of mRNA_H-paniculata_contig19302.4875.1 vs. uniprot
Match: A0A7S2CQI0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQI0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 9.220e-13
Identity = 30/55 (54.55%), Postives = 34/55 (61.82%), Query Frame = 1
Query:    1 AVFFSYLGPD-GRTDVGRTRHSGCPIIKGTKWIATLWMRLGVTDARGWQYYDPSG 162
            AV FSY  P  G  D G T HSGCP++ GTKW+ T WMRLGV     W   DP+G
Sbjct:   57 AVLFSYYDPKTGDMDTGLTEHSGCPVMAGTKWVITEWMRLGVGKDNPWTSSDPTG 111          
BLAST of mRNA_H-paniculata_contig19302.4875.1 vs. uniprot
Match: A0A7S3NFK8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NFK8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.420e-12
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 AVFFSYLG-PDGRTDVGRTRHSGCPIIKGTKWIATLWMRLGVTDARGWQYYDPSG 162
            AVFFSY     G  D G+T HSGCP+++G K++ATLW+R GV+    W  YDP+G
Sbjct:  446 AVFFSYFDMTSGLMDTGQTTHSGCPVLEGDKFVATLWLRKGVSKTDSWTQYDPTG 500          
BLAST of mRNA_H-paniculata_contig19302.4875.1 vs. uniprot
Match: A0A7S2FBF9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FBF9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.310e-12
Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 1
Query:    1 AVFFSYLGPD-GRTDVGRTRHSGCPIIKGTKWIATLWMRLGVTDARGWQYYDPSG 162
            AV FSY   D G  D G T HSGCP++KG KW+ T WMR GVT    W   DPSG
Sbjct:  474 AVLFSYHNKDTGLMDTGLTEHSGCPVLKGDKWVITQWMRAGVTSQYPWTAMDPSG 528          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19302.4875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5L771_9PHAE1.280e-2781.03P4Hc domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S3XMW1_HETAK2.000e-1761.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9U6N7_9STRA1.420e-1662.50Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A836CGT5_9STRA1.450e-1663.16P4Hc domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YYR1_9STRA5.300e-1661.40Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6U4DUF5_9STRA1.760e-1558.62Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A812U7S5_SYMMI2.520e-1457.14P4ha1 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S2CQI0_9STRA9.220e-1354.55Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3NFK8_9STRA2.420e-1252.73Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2FBF9_9STRA3.310e-1256.36Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19302contigH-paniculata_contig19302:4561..4737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue5.9e-22
Seed eggNOG ortholog2880.D8LFZ0
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
EC1.14.11.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929472.42202-CDS-H-paniculata_contig19302:4560..47371622929472.42202-CDS-H-paniculata_contig19302:4560..4737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19302 4561..4737 -
1691480876.4515975-CDS-H-paniculata_contig19302:4560..47371691480876.4515975-CDS-H-paniculata_contig19302:4560..4737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19302 4561..4737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19302.4875.1prot_H-paniculata_contig19302.4875.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19302 4561..4737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19302.4875.1

>prot_H-paniculata_contig19302.4875.1 ID=prot_H-paniculata_contig19302.4875.1|Name=mRNA_H-paniculata_contig19302.4875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
AVFFSYLGPDGRTDVGRTRHSGCPIIKGTKWIATLWMRLGVTDARGWQYY
DPSGMPSA*
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mRNA from alignment at H-paniculata_contig19302:4561..4737-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19302.4875.1 ID=mRNA_H-paniculata_contig19302.4875.1|Name=mRNA_H-paniculata_contig19302.4875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig19302:4561..4737- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTTTTCTTTTCTTACCTAGGACCCGATGGACGAACAGATGTCGGGCG CACACGGCACTCCGGCTGCCCGATTATTAAAGGGACGAAGTGGATCGCGA CTTTATGGATGCGTCTCGGGGTGACGGATGCTCGGGGCTGGCAATACTAC GATCCGTCCGGCATGCCCTCTGCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19302:4561..4737-

>mRNA_H-paniculata_contig19302.4875.1 ID=mRNA_H-paniculata_contig19302.4875.1|Name=mRNA_H-paniculata_contig19302.4875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig19302:4561..4737- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTTTTCTTTTCTTACCTAGGACCCGATGGACGAACAGATGTCGGGCG
CACACGGCACTCCGGCTGCCCGATTATTAAAGGGACGAAGTGGATCGCGA
CTTTATGGATGCGTCTCGGGGTGACGGATGCTCGGGGCTGGCAATACTAC
GATCCGTCCGGCATGCCCTCTGCGTGAGCGGTTTTCTTTTCTTACCTAGG
ACCCGATGGACGAACAGATGTCGGGCGCACACGGCACTCCGGCTGCCCGA
TTATTAAAGGGACGAAGTGGATCGCGACTTTATGGATGCGTCTCGGGGTG
ACGGATGCTCGGGGCTGGCAATACTACGATCCGTCCGGCATGCCCTCTGC
GTGA
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