mRNA_H-paniculata_contig193.4872.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig193.4872.1
Unique NamemRNA_H-paniculata_contig193.4872.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig193.4872.1 vs. uniprot
Match: D7G0W0_ECTSI (Similar to DEK oncogene (DNA binding) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W0_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 8.550e-61
Identity = 114/199 (57.29%), Postives = 137/199 (68.84%), Query Frame = 1 
Query:    1 VPVNLNKIDADHDLLKAFHALLYGVVGKKSTRKKNIRNFSGFAEPDDKASRAAKTKKLEAKKWTIPVLKDLCTLLGLEKGGDKSAVIERIVDFLFSPSAEASKAPREKKKKATPVKKRKSAGSEKGKPEKKIKVKRAPRPLSGFMVFSRANRERIKKDEPDLSFTDVGRRMGELWSAVSDADKEKFKQQGIAAFEKEHG 597
            VPVNLNKIDADHDLLKAFHA LYG VGKK+ RKKNIR+FSGF  PDD    A   K  E+KKWT+  L+DLCTLLGLEKGGDK+ V++RIV FL SP    SK P  KK K    KKRK             +VK  PRPL+G+M+F+R  R ++ K +P L  T+V  +MG++W+  SDA KEK+KQQGI  FEK+ G
Sbjct:   16 VPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGF--PDDDGKDARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAKKPKKA-AKKRKXXXXXXXXXXXXXEVK--PRPLNGYMMFTREARAKVLKADPGLKPTEVTAKMGQMWAECSDAQKEKYKQQGIKEFEKKKG 209
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BLAST of mRNA_H-paniculata_contig193.4872.1 vs. uniprot
Match: A0A6H5KFT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFT8_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 1.400e-60
Identity = 114/208 (54.81%), Postives = 141/208 (67.79%), Query Frame = 1 
Query:    1 VPVNLNKIDADHDLLKAFHALLYGVVGKKSTRKKNIRNFSGFAEPDDKASRAAKTKKLEAKKWTIPVLKDLCTLLGLEKGGDKSAVIERIVDFLFSPSAEASKAPREKKKKATPVKKRKSAGSEKGKPEKKIKVKRAPRPLSGFMVFSRANRERIKKDEPDLSFTDVGRRMGELWSAVSDADKEKFKQQGIAAFEKEHGGKTGKKDEE 624
            VPVNLNKIDADHDLLKAFHA LYG VGKK+ RKKNIR+FSGF  PDD    A   K  E+KKWT+  L+DLCTLLGLEKGGDK+ V++RIV FL SP    SK P  KK K    KKR              +VK  PRPL+G+M+FSR  R ++ K +P L  T+V  +MG++W+  SDA KEK+KQQGI  FE++ G    ++++E
Sbjct:   49 VPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGF--PDDDGKDARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAKKPKKA-AKKRXXXXXXXXXXXXXREVK--PRPLNGYMMFSREARAKVLKADPGLKSTEVTAKMGQMWAECSDAQKEKYKQQGIKEFEEKKGAVAEEEEDE 251
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BLAST of mRNA_H-paniculata_contig193.4872.1 vs. uniprot
Match: A0A482SK40_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SK40_9ARCH)

HSP 1 Score: 117 bits (293), Expect = 1.930e-28
Identity = 63/180 (35.00%), Postives = 110/180 (61.11%), Query Frame = 1 
Query:   13 LNKIDADHDLLKAFHALLYGVVGKKSTRKKNIRNFSGFAEPDDKASRAAKTKKLEAKKWTIPVLKDLCTLLGLEKGGDKSAVIERIVDFLFSPSAEASKAPREKKKKATPVKKRKSAGSEKGKPEKKIKVKRAPRPLSGFMVFSRANRERIKKDEPDLSFTDVGRRMGELWSAVSDADKE 552
            L K+  D +++K  H L+Y   G+K++ K N+R F+GF    +   +  K  +   KKWT+ +LK+  +L G+E+GG++  + ER+V++L  P    +   + K++++T    +K +   KG+     KVKRAP   + +++FS A+R  +K+  PD+SFTDVG+ +GE W+A+S  +KE
Sbjct:  106 LTKVKGDSEVVKCLHTLMYNTPGRKTSAKHNLREFNGFGSDVNVKEKTEKVVE-NKKKWTVSLLKEALSLFGMERGGNREELCERLVEYLAHPRIVVAPG-KTKRRRSTSKSPKKQSKKSKGE-----KVKRAP---TAYILFSNAHRAEVKEQNPDISFTDVGKTLGEKWNALSPEEKE 275
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BLAST of mRNA_H-paniculata_contig193.4872.1 vs. uniprot
Match: A0A6V1T0V1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T0V1_HETAK)

HSP 1 Score: 106 bits (265), Expect = 2.460e-24
Identity = 71/224 (31.70%), Postives = 110/224 (49.11%), Query Frame = 1 
Query:   13 LNKIDADHDLLKAFHALLYGVVGKKSTRKKNIRNFSGFAEPDDKASRAAKTKKLEAKKWTIPVLKDLCTLLGLEKGGDKSAVIERIVDFLFSPSAEASKAPREKKKKATP------------------------------VKKRKSAGSEKGKPEKKIKVKRAPRPLSGFMVFSRANRERIKKDEPDLSFTDVGRRMGELWSAVSDADKEKFKQQGIAAFEKEH 594
            L+ + +D ++L   H L+YG  GK +TRKK +R+F+GFA  D +     K +KL  +KWTI +L++LC +L L K G KS +++ +VDFL SPSA++         K TP                                                      +PLS FM FS+  R  +K++ PDL+ T+V +++GELW+  +D +K   KQ+ I  F K++
Sbjct:   51 LSTVSSDEEVLILTHRLMYGSAGKGTTRKKTLRDFNGFAAEDVEG----KKEKLNDRKWTIDLLRELCDILCLTKSGKKSELVDAVVDFLASPSADSVA-------KTTPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPLSAFMYFSQLTRPSVKEEFPDLAITEVAKKIGELWATKTDDEKAALKQEAIDEFNKKY 263
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BLAST of mRNA_H-paniculata_contig193.4872.1 vs. uniprot
Match: A0A7S3HSN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSN5_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.460e-22
Identity = 65/170 (38.24%), Postives = 100/170 (58.82%), Query Frame = 1 
Query:   10 NLNKIDADHDLLKAFHALLYGVVGKKSTRKKNIRNFSGFAEPDDKASRAAKTKKLEAKK-WTIPVLKDLCTLLGLEKGGDKSAVIERIVDFLFSPSAEASKAPREKKKKATPVKKRKSAGSEKGKPE---KKIKVKRAPRPLSGFMVFSRANRERIKKDEPDLSFTDVGR 507
            +L+ I +D+++ KA H+++Y  VGKK+  KKN+R FSGFA P+ K  + AK   LE KK WT+  LK    + GLEK GD+ A++ R++D+L  P      +   KK+K+T       A S+KG       K   KRAP   S +++F +A R+ ++ ++P+LS  D  R
Sbjct:   57 DLDSIKSDNEVCKALHSVMYNSVGKKADMKKNLRAFSGFA-PEQKDEKKAKV--LEKKKIWTVSTLKTALGMFGLEKSGDREALVARMIDYLAEPRFTKDASTTSKKRKSTG-----KASSKKGAXXXXXSKDGKKRAP---SAYILFCKAERDTLRAEQPELSMVDQTR 215
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BLAST of mRNA_H-paniculata_contig193.4872.1 vs. uniprot
Match: A0A7S0LPA8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LPA8_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 9.990e-17
Identity = 63/198 (31.82%), Postives = 106/198 (53.54%), Query Frame = 1 
Query:    1 VPVNLNKIDADHDLLKAFHALLYGVVGKKSTRKKNIRNFSGFAEPDDKASRAAKTKKLEAKKWTIPVLKDLCTLLGLEKGGDKSAVIERIVDFLFSPSAE------ASKAPREKKKKATPVK--KRKSAGSEKGKPEK-KIKVKRAPRPLSGFMVFSRANRERIKKDEPDLSFTDVGRRMGELWSAVSDADKEKFKQQ 567
            V   ++K  A  D LK  H L +G  G K+T K+N+R FSGF +    A  A   +KL+ K      LK +  +L +   G K     R++ FL  P A       A  A +++K++AT +K  K K+  ++  KP K K ++KR   PLS ++++  A R+++K + P+  FTD+ + + E W  +S+  ++K++ Q
Sbjct:   53 VKFRIDKHTAASDELKGLHKLCFGKPGNKTTIKRNLRKFSGFTDEKKSAMAARAVEKLDTK-----TLKKILEVLDVMLTGTKMECGARLIIFLQKPEASGKASLVAKIAEKKRKREATTLKADKTKAKAAKTTKPTKDKPELKR---PLSAYLLYCNAKRDKVKAENPEAKFTDLTKILAEKWKGISEERRKKYETQ 242
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BLAST of mRNA_H-paniculata_contig193.4872.1 vs. uniprot
Match: A0A7S0P664_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P664_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 3.800e-14
Identity = 61/194 (31.44%), Postives = 95/194 (48.97%), Query Frame = 1 
Query:    1 VPVNLNKIDADHDLLKAFHALLYGVVGKKSTRKKNIRNFSGFAEPDDKASRAAKTKKLEAKKWTIPVLKDLCTLLGLEKGGDKSAVIERIVDFLF--SPSAEASKAPR--EKKKKATP----VKKRKSAGSEKGKPEKKIKVKRAPRPLSGFMVFSRANRERIKKDEPDLSFTDVGRRMGELWSAVSDADKEKF 558
            V   L K  +  D LK  H L +G  G K   KKN+R FSGF E  D         K++ K  T+  + ++C L+     G+K    ER++ FL   +PS +AS A +  EKK+K T     V+                      RP+S FM++S+A R+++K + PD   T++ + +GE W ++S   K+K+
Sbjct:   50 VEFRLQKSTSVSDELKGLHRLCFGKPGSKLAIKKNLRKFSGFCEEGDALKAQKVLDKMDTK--TLKKILEVCDLM---LSGNKKEAGERLLTFLQKPAPSGKASLAEKIVEKKRKRTAKAETVEXXXXXXXXXXXXXXXXXKDEPKRPMSAFMLYSQAKRDKVKAEHPDAKITEIAKILGEKWKSISAERKKKY 238
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BLAST of mRNA_H-paniculata_contig193.4872.1 vs. uniprot
Match: A0A7S3ZBP1_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZBP1_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 1.000e-12
Identity = 55/175 (31.43%), Postives = 87/175 (49.71%), Query Frame = 1 
Query:   43 LKAFHALLYGVVGKKSTRKKNIRNFSGFAEPDDKASRAAKTKKLEAKKWTIPVLKDLCTLLGLEKGGDKSAVIERIVDFLFSPSAEASKAPREKKKKATPVKKRKSAGSEKGKPEKKIKVKRAPRPLSGFMVFSRANRERIKKDEPDLSFTDVGRRMGELWSAVSDADKEKFKQQ 567
            +K  H +L+G  GKK+ RK+ I+ F+G   P++  S   K      +K     LK    +L L++  DKS ++E  V FL  PS + +   +  K +    KKR            K       R  + +M+F+ + RE+IKK+ P+   TD+ +  GE W A+SD  KE FK++
Sbjct:   77 IKILHKILWGSDGKKTLRKRRIKEFNGV--PEEMCSSLRK----RVEKLKTAELKFCMQILDLKRSSDKSEMVETAVSFLKKPSGDRTLMSKTSKVQKLGSKKRXXXXXXXXXXXXK------KRTATSYMLFANSIREKIKKENPEKKMTDLAKIFGEKWRALSDEAKEPFKKE 239
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BLAST of mRNA_H-paniculata_contig193.4872.1 vs. uniprot
Match: A0A7S1IKZ5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IKZ5_9EUGL)

HSP 1 Score: 73.9 bits (180), Expect = 6.960e-12
Identity = 62/202 (30.69%), Postives = 94/202 (46.53%), Query Frame = 1 
Query:   13 LNKIDADHDLLKAFHALLYGVVGKKSTRKKNIRNFSGFAEPDDKASRAAKTKKLEAKKWTIPVLKDLCTLLGLEKGGDKSAVIE-RIVDFLFSPSAEASKAP-------REK--KKKATPVKKRKSAGSEKGKPEKKIKVKRAPRPLSGFMVFSRANRERIKKDEPDLSFTDVGRRMGELWSAVSDADKEKFKQQGIAAFEK 588
            +N+  AD   +K  H L Y   GK +TRK+++R FSG  + D+K  R    + L  K   + +LKD+ T+   +  G   A  +  +V FL  P A  ++ P       REK  +K A   KKR+               K   RP S F +FS   R  IK   PD   T++ +R+G+ W  + D DK+ + ++     EK
Sbjct:   89 MNRYRADDPAMKMCHKLCYKREGKATTRKRDLRQFSGVWDCDEKEVR---DRVLRVK--PVSLLKDVATIFDCKPQGSTIADHQDSLVKFLLKPKASGNEVPLTEAAKKREKNARKNAALQKKREXXXXXXXXXXXXXXXKGPKRPPSAFFLFSSERRPAIKAKHPDWGITELAQRIGKEWGKMGDTDKKPYNKKAAKLKEK 285
[Close]
BLAST of mRNA_H-paniculata_contig193.4872.1 vs. uniprot
Match: UPI001B88AEA2 (protein DEK-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88AEA2)

HSP 1 Score: 72.4 bits (176), Expect = 3.470e-11
Identity = 46/117 (39.32%), Postives = 69/117 (58.97%), Query Frame = 1 
Query:    1 VPVNLNKIDADHDLLKAFHALLYGVVGKKSTRKKNIRNFSGFAEPDDKASRAAKTKKLEAKKWTIPVLKDLCTLLGLEKGGDKSAVIERIVDFLFSP----SAEASKAPREKKKKAT 339
            + V LN+  +    LK+ H +L+GV G  +  K+NIR F+GFA   DK  +  + K     K  +PVLKD+C +L +E+ G K A+I+RI+DFL  P     A   K+ + +KK+AT
Sbjct:  234 IEVELNRHRSSD--LKSLHRILFGVTGVATLAKRNIRQFTGFAF--DKNDKEYQKKVDILNKMFLPVLKDICKVLCIERSGTKEAIIQRIMDFLLCPRIKGKAITPKSSQPRKKRAT 346
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig193.4872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0W0_ECTSI8.550e-6157.29Similar to DEK oncogene (DNA binding) n=1 Tax=Ecto... [more]
A0A6H5KFT8_9PHAE1.400e-6054.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SK40_9ARCH1.930e-2835.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6V1T0V1_HETAK2.460e-2431.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3HSN5_9STRA1.460e-2238.24Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S0LPA8_9EUKA9.990e-1731.82Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S0P664_9EUKA3.800e-1431.44Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S3ZBP1_9EUKA1.000e-1231.43Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A7S1IKZ5_9EUGL6.960e-1230.69Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
UPI001B88AEA23.470e-1139.32protein DEK-like n=1 Tax=Gigantopelta aegis TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig193contigH-paniculata_contig193:120..7179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.6
Seed ortholog evalue5.9e-51
Seed eggNOG ortholog2880.D7G0W0
Preferred nameDEK
KEGG koko:K17046
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006282,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006996,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0016032,GO:0016043,GO:0016070,GO:0018130,GO:0019058,GO:0019079,GO:0019219,GO:0019222,GO:0019438,GO:0023052,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0040029,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051252,GO:0051276,GO:0051704,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097659,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2000779,GO:2001020,GO:2001032,GO:2001141
EggNOG free text desc.regulation of double-strand break repair via nonhomologous end joining
EggNOG OGsKOG2266@1,KOG2266@2759
Ec32 ortholog descriptionHigh mobility group and SAP domain protein
Ec32 orthologEc-23_002100.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons6
Model size660
Cds size660
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig193.4872.1prot_H-paniculata_contig193.4872.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig193 120..7179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929471.6248596-CDS-H-paniculata_contig193:119..2271622929471.6248596-CDS-H-paniculata_contig193:119..227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig193 120..227 -
1691480876.1509182-CDS-H-paniculata_contig193:119..2271691480876.1509182-CDS-H-paniculata_contig193:119..227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig193 120..227 -
1622929471.7206109-CDS-H-paniculata_contig193:689..7601622929471.7206109-CDS-H-paniculata_contig193:689..760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig193 690..760 -
1691480876.164597-CDS-H-paniculata_contig193:689..7601691480876.164597-CDS-H-paniculata_contig193:689..760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig193 690..760 -
1622929471.7694979-CDS-H-paniculata_contig193:2113..22431622929471.7694979-CDS-H-paniculata_contig193:2113..2243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig193 2114..2243 -
1691480876.176936-CDS-H-paniculata_contig193:2113..22431691480876.176936-CDS-H-paniculata_contig193:2113..2243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig193 2114..2243 -
1622929471.7836912-CDS-H-paniculata_contig193:4397..44991622929471.7836912-CDS-H-paniculata_contig193:4397..4499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig193 4398..4499 -
1691480876.1867669-CDS-H-paniculata_contig193:4397..44991691480876.1867669-CDS-H-paniculata_contig193:4397..4499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig193 4398..4499 -
1622929471.8016691-CDS-H-paniculata_contig193:5060..51961622929471.8016691-CDS-H-paniculata_contig193:5060..5196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig193 5061..5196 -
1691480876.196454-CDS-H-paniculata_contig193:5060..51961691480876.196454-CDS-H-paniculata_contig193:5060..5196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig193 5061..5196 -
1622929471.8169918-CDS-H-paniculata_contig193:7066..71791622929471.8169918-CDS-H-paniculata_contig193:7066..7179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig193 7067..7179 -
1691480876.206562-CDS-H-paniculata_contig193:7066..71791691480876.206562-CDS-H-paniculata_contig193:7066..7179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig193 7067..7179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig193.4872.1

>prot_H-paniculata_contig193.4872.1 ID=prot_H-paniculata_contig193.4872.1|Name=mRNA_H-paniculata_contig193.4872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp
VPVNLNKIDADHDLLKAFHALLYGVVGKKSTRKKNIRNFSGFAEPDDKAS
RAAKTKKLEAKKWTIPVLKDLCTLLGLEKGGDKSAVIERIVDFLFSPSAE
ASKAPREKKKKATPVKKRKSAGSEKGKPEKKIKVKRAPRPLSGFMVFSRA
NRERIKKDEPDLSFTDVGRRMGELWSAVSDADKEKFKQQGIAAFEKEHGG
KTGKKDEENEDDDEVCTEL*
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mRNA from alignment at H-paniculata_contig193:120..7179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig193.4872.1 ID=mRNA_H-paniculata_contig193.4872.1|Name=mRNA_H-paniculata_contig193.4872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7060bp|location=Sequence derived from alignment at H-paniculata_contig193:120..7179- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCCGGTGAACCTGAACAAGATCGATGCGGACCATGACCTGCTGAAGGC
CTTCCACGCCCTCCTGTACGGCGTCGTGGGCAAGAAGAGTACACGAAAGA
AGAACATCCGCAAGTGAGTCAATTTTCTTTTCTTCTTTTTTTTTTGCTCG
ACTAGGTCTGCTCTTGTGTTGTTTTGTTGTGTGTGTGTGTTTTTTTGTTT
TTTTTTGGATATGAGAAGATGAGTGCGCAAGTTTTTTTTTTTATGTTGTA
CTATTTAGTAGAGACAGGTCACGGGTACGCCAGTGACGGCGACTACTGGT
GACGAGGTTGCGGTATCTCTTTCACTGCTCAAGAACACGGACTCGCTTAG
ACTTCTCGCATGTAGGCGTAATCAACCTTCTAGTTTCGCGCTATACACAC
GGGCTCGCTGCGCATGCCGTGGCTGGCTTGCGCTCACTCGCATGTGTAAA
CACATCGCAGAGTATCAACATTGCAAGGTGTCCTGTGACGGCAGAAATGC
GAGCGGGCAAGGCTCAACGGTTATATATGTGCACACTTTTAACCGTAGTG
TCAGAAATACCATGATGGGGGATACAAACGCGAGAAATAATAAACTTGAA
GGAATTATGGACACTGACAGGTACAACGGCACTGGGTGGGAGGATACATT
TACCAACGGATTACAGCGGTGCAGTTGTTCGAGTTTACGCCCTGTCAATA
AATTCTCTACGCACCCTCTTTAGCGTCAGGCTCGCTCCCACCCTATGCGC
TAGACACCCTCCGCACGTGCAAACGCGCTTTTCCTATTCGTGTTTGTATG
GCAAGCCTCTATGGCAGTCATCATTTTAATTCTCTGGACTATCTGTTCAT
GGTTTCTTCGCCTCTCTCTTTCTCTCTCTCTTTGTCTCTCTCTCGGTATA
AAGACGTGTCCCCGTGGGCGTGCGTCTCTGTTGACCTGCCCTGCCGAGTG
GCCACGGCTACCTGTCATTGTTCCTGTGTTCACTGCTCTGTACTGAGCTG
TAGGTTTGTCTGTCTGTACTGTCTTGTGGACTCGGCGTGGTGACCATGTA
GAGCTGACCGTTTAGTCATTAGCTTTTTTATTTGTCAAGTTACTTGAGCT
GAGACTGCTTTTTTTGGCTATGTGAAGATGAACAATCGTATTTTAGATCC
CGTAGTTTTACGTTACTTGAGTTTAGAGGCGAAAAAGAGGTCCGAAATAG
CCATTACATTATCCCATTATAATGTGAGGATCTTTTAAAGTCAACGAGTT
ATGCCCACTTGTCGGGCTATTTCGGATATCGATCAGAAATTCACCCTTTT
TCAGAGTGTTTTAGTGTTTTTTGTTTTTGTTTGATTTCATGGTGGAGAGT
CGTTTTGAGTTAATGCATTCCCCTCACAAGTTGTTTATACGAAAAATGTG
GTACAATGTGTTCACATATATTTTTCAATGTTTCCATAAATTTTATTTTC
GATTAATTTGGTGAATAACTTGTAAATTTTCAAGTTTTCCCCATCTTTCT
TACACAGTCCGTACATGTGACAGTGTGCTCTTATTCATGTATACAGTTAG
GTTGATTTAGAGTATGGGGTATCAATCAGCACGTGGGTTGATCGTCACTA
CAAGTATTTAATATCTCCGAAGCTTGCCTCCGTTTGGTAGTAGACGCGGT
GTCTCACATAAGGTTTGCACGCCGTGGACAACGTTTTGGTTGACTAGACA
ATCGTTTGGTTTAGGTGATCTCGGTTAACTCTAGTTATAACTGTTTGAGT
CAACTATTATATTTATTTTTTCATCACACGACTATGGTTGATGCCTAGCA
AGCGGAAGAGCTGGATTTTTCTGCGTCTATGTGTCAAAACCGTGGTCATT
TTTTTTTCCTCTCAATGACAACGATTCTGAAAAATATACTTTTTTAGGCT
GTTTTTTTTTTACTAAATAGTTGATGGTTGTCCGGTGTGTGCATTTTTTT
TCCTTCTTTGTTCGGAATTTTCCGGCGGAAAAGTTTCTCTGGGTTCGCCG
AGCCGGACGACAAGGCATCGCGTGCCGCCAAAACGAAGAAGCTGGAGGCG
AAGAAGTGGACAATACCTGTGCTCAAGGACCTCTGTACTCTGCTCGGCCT
CGAGAAGGGTGGCGACAAGGTGATATATTGTGTATTAAAATATGGATGTA
TATGTACGTGCTCATTCGTAGGGGATAAATACAACACATTTAGATTTATT
CCGACTCATGGAGGTACATCGGGATTTTTTCCACCCGCCATATCTGTGTA
ATTGTGCCAGGTCATGCCCCAAAATTTTAACAGCTGAATTATGATCCACC
GTATGTGTGTGTGTGGTGTGTGTGTCGTAGTTTAGCAGGAAGTATCTTGT
TTGCTTCCTTGTCACGGCTATTTTTTGTCATCATCCAGCCGTGTCAAGGC
GTTACGACGTTTTTGCCAACCGCCGATTTCGTTTCTATTCGTGTGGGTGG
ATTCGGATGGTTTGAATTAAACTAAAAACAAATATCACCGGCAACGTTCA
GGTGACGTCTAATGGCATGAAATCCGAATTTGTCGGTCAATCTCATCTTT
CAGGTCTTGTCTACACGTTTCAACCCGAACCCTAAATTTGTTTCTCGTGT
GTATGTAAACGTTTTTTTATCTGTTTTGTGCCGCAATTTTTTTCACCTCA
ATTCGGATTGTGCTGTGTATTATTTTGCAGTCGGCGGTGATCGAGCGCAT
CGTGGACTTCCTGTTCAGCCCCTCGGCGGAGGCCAGCAAGGCGCCGCGGG
AAAAGAAGAAAAAGGCCACCCCGGTCAAGAAGGTGAGAAAAAGCTCTTGA
ACGTTCTACAGTGGGACATACTATATTATAACCTCTGTCTCGCTAAATAC
GCCGTATTTGCATGCGCACAAAATGCACCATTTTGGGCATAATATGGATA
CCTACTTTGGCTGTAACTTTTCATAAAAAAATTATTTGCATGCGACAATG
TAGGTATCTCCGGAGAGCGTACAATCTGACGCTTCCAACGGTGCAGCACA
ACTTGAAAAACGCTCTGTTATCCAAAGTTACGCTTGAGAATACGCCACCG
GAACTCAAAAACCGTATTCCACCAGATTTTACAACATTTATGTTCGGGAT
TTTTGGATATTCGGTCTGCAAAGCTCAATCTGTATGTTGTTGAAGCTTCC
ATTATTTTTTTTTGCGATACCCTTAGAACACAGTGTAAAATTTAAGGTTA
TTCATTAATTTAACATTTTTTTTTTTCAATTCCTCTCGCTATTGGCTACA
TCGAGATAATAATCTCCCCTTTCACTTTTTTTTTTTTTCCTTGTAATTAT
CGAGGTATTGCTCCAAAACCTTATTTTCCTATGGGAAAAATCCAGATTTT
TTTACTCTTGAAACTTCCCTGGTTTTTCAATATTTTCGGCAAAAAACTGA
AAAATATTTTTCCATGTGTACTCATGGCACTGGTAAAAAAAATTATATTA
AAAAAATTGCCGTACTTGTCGAGATATGGCGAGGGAGTAATTACTTACGT
CCCACCGTAGTAGACCTAGCCCTCTGAGATCTGGGCTTGGGAATTTGTTT
TTCATGATTGAAAATAGTTTGTATCAGATGTCGAGACGCAACCCATCGCA
TAATTGTTTTTAGGCACTCGGGTCTGCTTTTTGGCACTCCTTTGGAACAC
TCAGAAAATGCTGGTATTCATCACGAATTGGATGTAAATCTCGAACGGTA
CTTGGAAAGGTACGGCATCCCGAAAGGGGTTTGATGCCAAAATATTGGTC
GATAACAAAAAAAAAGGGACGACTGGAAAAATCAGTTTCTTGTGGGCGTC
GACAACTTGATTTTTGAGGAAGGGTGTGGTTCTTTCACTTGGCTAACTAG
TTTTATTGACTTTTTAGCGTTGAAAAAACTAGAGTTTTTGGAAGGAAGCT
TTTGTTCATGGTTTATCGTTTTGTCACGTTTTTTTGGGTTTTTTTTCGAT
TAAAAAAAAATATCAATTCAGTTAAACGACGTTCGATAGGAACTGTTGAT
TATGTGCGATTTCTTATGCTTCTCGGTAGAAACGTAAAATACTTGACGAG
TACCCCTTATTGCGGTCGTTCCGTTTTCGTCAATTGTATCCAATACCGGG
ACAATCTTTGATAAATCTGTTTCTTGATACATGTATATATATTTGTCATA
GTACATTCGGTTCAAAATAATTGATCTTGTTGTCTCCACCGTTGTGATTA
CTTTTTTCAGGATTAAAAAAAAATTATAATAATAATAAAAAAAAAAGTTG
ATGGCAACATTGATTTATTGTAGGTTTTGGCGTTACCATCATATTTAGTA
GAAAAAACAATCTACTATTCCATCTGTGTTGTGCCATTTTCTCCATGCAG
GAGAAACACACACTTTCTGTGAAATAAGAAGCGCTGCTATTTACGTGTGT
ATCGGATTACGAATGTCATAACGTTTTTGCCAGGAAGTGGTCGCTGTCAG
AGCTCTAATTAAGAGACACTGACTCAAGTACATGCGAAGTATGTAGCAAT
TGCATATTTTTTTCATTAAACTAAACTCTTGGAACCATTATTCTCTATCC
TTTATTAATTATTTTTGTACCAAACATAAAAAATTTCAGCCGAAAAAAGT
TCATTCTGTCAGAAACACAGAGTGGATTTTTCAGAGAGTGAAAAACATAG
AGCTCTAATACTAGAACACCCATCAAACAGTAAAATGTAAAAACCAACTT
TGAATTCCAACATGACCGTTTTCTGCATCACCACGCTGAATTTTTTCTTC
TGCTGCCCGTTTCTCGCGCGTACACACACACGGTGAATTTCCCTATTTGT
ATCGCTACATAAAAATTTCTCGTTTTTTCCCTGCTCTACTCTTCATACCA
GTATAATCCTAGGCGTAACCCCTGCACTGCTGGTCCTGTTATCTCCACCC
TTCATCCCCTGTTGCCTATACACTATACACACGCAGAGGAAGTCTGCCGG
GTCGGAAAAGGGCAAGCCCGAGAAGAAAATCAAGGTCAAAAGAGCGCCTA
GACCGCTGTCCGGGTTCATGGTGTTCAGCCGCGCCAACCGTGAACGGATC
AAGAAAGACGAGCCTGGTGAGCGAGGGAGAGAGAACGAGAGAGTGAGAGA
GTGATTTATGTTTTGTTAACGAAAAAAAGCGTTTGAAATGCATATGTAGG
ACGAGAAAGAAAGAAAGAGCGTCATATTTGTTTGTAGTCGGCTTAAAAAC
GCGCGTATTAATCGGTAAACTGGGCAGAGCTGGGCTCGTGACTGTGTTGA
GTTGAAGGCAGCTTGTGAAAGGCGGGCCGAGAGATAGAGTCTTGTATTAT
TGCTGATGGACCGTCTCCCGTGCTTGCATAAGAGTGGAAAAGGGAGAGAG
TGAGGAGTGACTCTCCTGCACAAGACAGCACCAGAGAACTTCCTCTAATC
GAACCTCCAATTCCTCAAGATACACCGAAGAAATTACACAGAAATTTCCT
AATCCTCAGTGATAGTCCGCTCCCATATCCGACCATAAATCCCTGATACA
CATCCATCACACTACGCTACAAGTATATCCAACACGTATTATTTCCAATA
ATTCCCACTTTGAAACTGATTTAATTGATCGTTAAAACCATGGCTCTGAA
CTTGCATAATAATCGCGTGGTTGCATATAATAATATTTTCGGACATATCT
TTGAAATATATATATACATATATTTAAAGAAATTATGCATGAAAGTGGAC
CTGTGGTTCCTTTCTATAGCGTTGCAATCTAACCTCGCAGTGTTTTCAGC
CTTGAGGTTATTCAAATATGTGACGCCAAGTGTCGAAAAATTTGATAACT
TGGAAGGCTAAAAACACTACTGCGAAGTTAGCTTGAAACGCTGCATGAGC
CAGACGTCAGTTAAACTTTGCGGCGTTTTTTCCTGTTGTTTTTTTTTTCA
AATAATACATCATGTACATGAGTTCAAGCTCTCATGCGCAAACACAAATG
TTTTGCGGTCAGATTGCGTTTACACCCCCATGTGTTGACACGATTGACGA
TGCTGTGTAAAGAGCAAGGTAGCACGTGAAGCTGTTGTCGATCCTCTCTG
TCCTGTTGAAGTTGTCCTTGGCAAAAGAGGCGAACGTGTTGTTATCTGGC
CTGCCCCCTTTGCTCCGCCCAACACACCATCGGGCATCTCGGAGACTAAA
GACAGTGCAGTCACGATTCAATTCAGAGAGTGATCTGTAGGAAAGAATGA
GATACTACTAGCTGACAGACAGCTGTGGTACACACTCGAACACGGTGTAC
TGGCTGAGGTTGTCCTTGCTCGAGACCGTAACCGCTGCCGAAGGTTAGGT
TTGTCACAATATCATATCCGCGCTTGCCGGTGGCACCGTGCGTTCCGCCG
TTGCCATCCTTTTTACCGATGAACGGCTCTTCGTTGCCAATTGCTTGTAT
TCGCATGGATGTTTTGTAGACCTTTCGTTCACAGATGTTGGCAGGAGGAT
GGGGGAGCTGTGGTCAGCGGTCTCGGACGCAGATAAGGAGGTAAGTACCA
TTCGATTTGGGAAGGATTTATTACAAATCCCTTGGTTAAGTCGTTTCCTT
TTTCTTTTTTTTCTTGTGGATGTACTCGTTGTTTAGGCAACACCATATTT
TTACTATTTATTGTCGAAGTGAAGCAACGTCAGCATGTACACATAGATGT
ATCCTGACGCAGGCGGAAAAGCAGGTTAGCAGGCCCATGAGGGTCCATCC
ATGGAGTCGTGATAAGAGATATTCACGGTATTTACGCGTATTGCTTGCTG
AGGTCATCACGTTTATGCTCATTCAATATATTGCCTTGGCAAGGTCTTTC
CAGCGACACACTTTTTGTTGTCTTTGCCAACAGCGCGCCGTAGTCGTCGA
GATACCATGTCATCCGTTCATGTCGTTTCCTACTACTATAAACATATTTT
TCCAAACCCATATGCGCCCTTGTTTTACCTTGTGTGTGCTCGGGGTTTGC
AGAAGTTTAAGCAACAAGGGATCGCTGCCTTCGAAAAGGAGCACGGAGGG
AAGACGGGGAAGAAGGACGAAGAAAATGAGGATGATGACGAGGTGTGTAC
AGAGTTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig193:120..7179-

>mRNA_H-paniculata_contig193.4872.1 ID=mRNA_H-paniculata_contig193.4872.1|Name=mRNA_H-paniculata_contig193.4872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig193:120..7179- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCCGGTGAACCTGAACAAGATCGATGCGGACCATGACCTGCTGAAGGC
CTTCCACGCCCTCCTGTACGGCGTCGTGGGCAAGAAGAGTACACGAAAGA
AGAACATCCGCAAGTGCCGGTGAACCTGAACAAGATCGATGCGGACCATG
ACCTGCTGAAGGCCTTCCACGCCCTCCTGTACGGCGTCGTGGGCAAGAAG
AGTACACGAAAGAAGAACATCCGCAATTTCTCTGGGTTCGCCGAGCCGGA
CGACAAGGCATCGCGTGCCGCCAAAACGAAGAAGCTGGAGGCGAAGAAGT
GGACAATACCTGTGCTCAAGGACCTCTGTACTCTGCTCGGCCTCGAGAAG
GGTGGCGACAAGTTTCTCTGGGTTCGCCGAGCCGGACGACAAGGCATCGC
GTGCCGCCAAAACGAAGAAGCTGGAGGCGAAGAAGTGGACAATACCTGTG
CTCAAGGACCTCTGTACTCTGCTCGGCCTCGAGAAGGGTGGCGACAAGTC
GGCGGTGATCGAGCGCATCGTGGACTTCCTGTTCAGCCCCTCGGCGGAGG
CCAGCAAGGCGCCGCGGGAAAAGAAGAAAAAGGCCACCCCGGTCAAGAAG
TCGGCGGTGATCGAGCGCATCGTGGACTTCCTGTTCAGCCCCTCGGCGGA
GGCCAGCAAGGCGCCGCGGGAAAAGAAGAAAAAGGCCACCCCGGTCAAGA
AGAGGAAGTCTGCCGGGTCGGAAAAGGGCAAGCCCGAGAAGAAAATCAAG
GTCAAAAGAGCGCCTAGACCGCTGTCCGGGTTCATGGTGTTCAGCCGCGC
CAACCGTGAACGGATCAAGAAAGACGAGCCTGAGGAAGTCTGCCGGGTCG
GAAAAGGGCAAGCCCGAGAAGAAAATCAAGGTCAAAAGAGCGCCTAGACC
GCTGTCCGGGTTCATGGTGTTCAGCCGCGCCAACCGTGAACGGATCAAGA
AAGACGAGCCTGACCTTTCGTTCACAGATGTTGGCAGGAGGATGGGGGAG
CTGTGGTCAGCGGTCTCGGACGCAGATAAGGAGACCTTTCGTTCACAGAT
GTTGGCAGGAGGATGGGGGAGCTGTGGTCAGCGGTCTCGGACGCAGATAA
GGAGAAGTTTAAGCAACAAGGGATCGCTGCCTTCGAAAAGGAGCACGGAG
GGAAGACGGGGAAGAAGGACGAAGAAAATGAGGATGATGACGAGGTGTGT
ACAGAGTTGTAGAAGTTTAAGCAACAAGGGATCGCTGCCTTCGAAAAGGA
GCACGGAGGGAAGACGGGGAAGAAGGACGAAGAAAATGAGGATGATGACG
AGGTGTGTACAGAGTTGTAG
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