prot_H-paniculata_contig19293.4870.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig19293.4870.1
Unique Nameprot_H-paniculata_contig19293.4870.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length195
Homology
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5LN90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN90_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 1.300e-67
Identity = 119/197 (60.41%), Postives = 142/197 (72.08%), Query Frame = 0
Query:    3 FGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMFAA----GLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 195
            FGV + PWLFQ +MS+ LGH+ PDSG+L Y+D + C++ TFE +L S++ MFAA    GLTLK  KIQFG KEV+Y+ HVIS  GIS S DR +AI NLP P  IK+LRS+L +VNFVRR I+ YA VTAPLV LT K      +F+KAWG AQD  F  +K  + S  VL FP FSREFVVHTDASE G GAFLAQ
Sbjct:   55 FGVANAPWLFQHVMSLALGHLGPDSGVLSYMDDLICINHTFEAHLSSLEKMFAALQAAGLTLKPSKIQFGQKEVDYLGHVISAKGISVSTDRIDAIRNLPTPTCIKDLRSVLGMVNFVRRAIKDYADVTAPLVELTRKDYVKRASFKKAWGSAQDAAFENVKRVLSSTPVLHFPDFSREFVVHTDASEQGVGAFLAQ 251          
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5K047_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K047_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 8.660e-67
Identity = 117/197 (59.39%), Postives = 142/197 (72.08%), Query Frame = 0
Query:    3 FGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMFAA----GLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 195
            FGV + PWLFQ +MS+ LGH+ PDSG+L Y+D + C++ TF+ +L SI+ MFAA    GLTLK  KIQFG KEV+Y+ HVIS  GIS S DR +AI +L  PK IK+LRSIL + NFVRRF++ YA +TAPLV LT K       F++AWGP QD  F  +K A+ SA VL FP FSREFVVHTDASE G GAF AQ
Sbjct:   90 FGVANAPWLFQHVMSIALGHLGPDSGVLSYMDDLICINRTFKTHLVSIEKMFAALQAAGLTLKPSKIQFGRKEVDYLGHVISAKGISVSTDRIDAIRDLSTPKCIKDLRSILGMANFVRRFVKNYADLTAPLVDLTRKDFVKPRKFREAWGPDQDAAFQQLKDALSSAPVLHFPDFSREFVVHTDASELGVGAFPAQ 286          
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5JHS5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS5_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 2.000e-66
Identity = 117/197 (59.39%), Postives = 140/197 (71.07%), Query Frame = 0
Query:    3 FGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMFAA----GLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 195
            FGV + PWLFQ +MS+ LGH+ PDSG+L Y+D + C++ TFE +L  I+ MFAA    GLTLK  KIQFG KEV+Y+ HVIS  GIS S DR +AI +L  PK IK+ RSIL + NFVRRF + YA +TAPLV LT K       F++AWGP QD  F  +K A+ SA VL FP FSREFVVHTDASE G GAFLAQ
Sbjct:  147 FGVANAPWLFQHVMSIALGHLGPDSGVLSYMDDLICINRTFETHLVPIEKMFAALQAAGLTLKPSKIQFGRKEVDYLGHVISAKGISVSTDRIDAIRDLSTPKCIKDFRSILGMANFVRRFAKNYADLTAPLVDLTRKDFVKPRKFREAWGPDQDAAFQQLKDALYSALVLHFPDFSREFVVHTDASELGVGAFLAQ 343          
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5JGF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF6_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 1.480e-62
Identity = 117/197 (59.39%), Postives = 141/197 (71.57%), Query Frame = 0
Query:    3 FGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMFAA----GLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 195
            FGV + PWLFQ +MS+ LGH+ PDSG+L Y+D + C++ TFE +L SI+ MFAA    GLTLK  KIQFG KEV+Y+ HVIS  GI  S DR +AI ++  PK IK+LRSIL + NFVRRF + YA +TAPLV LT K       F++AWGP QD  F  +K A+ SA VL FP FSREFVVHTDASE G GAFLAQ
Sbjct:  147 FGVANAPWLFQHVMSIALGHLGPDSGVLLYMDNLICINRTFETHLVSIEKMFAALQAAGLTLKPSKIQFGRKEVDYLGHVISAKGIFVSTDRIDAIRDVSTPKCIKDLRSILGMANFVRRFAKNYADLTAPLVDLTRKDFVKPRKFREAWGPDQDAAFQQLKDALYSALVLHFPDFSREFVVHTDASELGVGAFLAQ 343          
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5K3U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3U6_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 1.100e-59
Identity = 112/197 (56.85%), Postives = 139/197 (70.56%), Query Frame = 0
Query:    3 FGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMFAA----GLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 195
            FGV + PWLFQ +MS+ LGH+ PDSG+L Y+D + C++ TFE +L SI+ MFAA    GL+LK  KIQFG KEV+Y+ HVIS  GIS S D  +AI +L  PK IK+LRSIL + NFV  F++KYA +TAPLV LT K       F++A GP QD  F  +K+A+ SA +  FP FSREFVVHTDAS  G GAFLAQ
Sbjct:  147 FGVANAPWLFQHVMSIALGHLGPDSGVLSYMDDLICINRTFETHLVSIEKMFAALQAAGLSLKPSKIQFGRKEVDYLGHVISAKGISVSTDHMDAIRDLSTPKCIKDLRSILGMANFVLCFVKKYADLTAPLVDLTRKDFVKPRKFREARGPDQDAAFQQLKNALSSAPLQYFPDFSREFVVHTDASALGVGAFLAQ 343          
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5KCT5_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT5_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 7.240e-59
Identity = 106/197 (53.81%), Postives = 132/197 (67.01%), Query Frame = 0
Query:    3 FGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMF----AAGLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 195
            FGV + PW+F  M    LGH+ P+  LL Y+D    LS TFE ++KS++ MF    AAGLTLK  KI FGPK + Y+ H+IS +GIS   DR  A+ NLP P+ +K+LRS+L +VNFVRRFI  YA++T PLV LT K  A +  F KAW  + D +FA +K  + SA VL FP F REFVVH DASE G GAFLAQ
Sbjct:  211 FGVCNAPWIFTEMAHKTLGHI-PE--LLIYMDDFCVLSATFENHMKSLESMFVALQAAGLTLKPSKISFGPKSIEYLGHIISAEGISVGKDRIKAVQNLPTPRCLKDLRSVLGVVNFVRRFIPDYAEITNPLVELTRKEYATKSRFVKAWNKSHDASFAHLKRLLTSAPVLHFPDFDREFVVHVDASEHGCGAFLAQ 404          
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5K153_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K153_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 7.180e-57
Identity = 106/197 (53.81%), Postives = 132/197 (67.01%), Query Frame = 0
Query:    3 FGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMF----AAGLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 195
            FGV + PW+F  M    LGH+ P+  LL Y+D    LS TFE ++KS++ MF    AAGLTLK  KI FGPK + Y+ H+IS +GIS   DR  A+ NLP P+ +K+LRS+L +VNFVRRFI  YA++T PLV LT K  A +  F KAW  + D +FA +K  + SA VL FP F REFVVH DASE G GAFLAQ
Sbjct:  234 FGVCNAPWIFTEMAHKTLGHI-PE--LLIYMDDFCVLSATFENHMKSLESMFVALQAAGLTLKPSKISFGPKSIEYLGHIISAEGISVGKDRIKAVQNLPTPRCLKDLRSVLGVVNFVRRFIPDYAEITNPLVELTRKEYATKSRFVKAWNKSHDASFAHLKRLLTSAPVLHFPDFDREFVVHVDASEHGCGAFLAQ 427          
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5JGV3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV3_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 1.900e-55
Identity = 101/176 (57.39%), Postives = 124/176 (70.45%), Query Frame = 0
Query:    3 FGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMFAA----GLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGF 174
            FGV + PWLFQ +MS+ LGH+ PDSG+L Y+D + C++ TFE +L S++ MFAA    GLTLK  KIQFG KEV+Y+ HVIS  GIS S DR +AI NLP P  IK+LRS+L +VNFVRRFI+ YA VTAPLV LT K      +F+KAWG AQD  F  +K  + S  VL FP F
Sbjct:  298 FGVANAPWLFQHVMSLALGHLGPDSGVLSYMDDLICINHTFEAHLSSLEKMFAALQAAGLTLKPSKIQFGQKEVDYLGHVISAKGISVSTDRIDAIRNLPTPTCIKDLRSVLGMVNFVRRFIKDYADVTAPLVELTRKDYVKRASFKKAWGSAQDAAFENVKRVLSSTPVLHFPDF 473          
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5L7Z2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Z2_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 2.970e-55
Identity = 102/197 (51.78%), Postives = 129/197 (65.48%), Query Frame = 0
Query:    3 FGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMF----AAGLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 195
            FG+ + P+LFQR M++   H  P SGLL Y+D + C S T+E +LK ++  F    AAGLTLK  K+QFGP+EV Y+ H+ S DGI    DR  AI ++P P  IKELRS+L  VN+VR+FI   A VTAPLV LT K   A  +  K WGP  D  FA +K  + +A +L FP FS+EFV+H DAS AG GAFLAQ
Sbjct:   55 FGIANAPFLFQRTMALAFAHFGPKSGLLVYMDDLICCSSTWEGHLKLLENTFQALQAAGLTLKPSKVQFGPQEVKYLGHIPSSDGIRLGEDRIKAILDIPTPTNIKELRSVLGTVNYVRKFIPNLATVTAPLVDLTKK--EAMKSVAKRWGPEHDEAFAEVKKLLAAAPLLNFPDFSKEFVIHVDASNAGTGAFLAQ 249          
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5L2D4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D4_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 6.560e-55
Identity = 101/197 (51.27%), Postives = 127/197 (64.47%), Query Frame = 0
Query:    3 FGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMF----AAGLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 195
            FGV + P+LFQR M++   H  P SGLL Y+D + C S T+E ++  ++  F    AAGLTLK PK+QFGPKEV Y+ H+ S DGI    DR  +I  LP P  IK LRS+L  +N+VR+FI   A VTAP+V LT K   A  +  K WGP  D  FA +K  + +A VL F  FS+EFV+H DASE GAGAFLAQ
Sbjct:   25 FGVANPPFLFQRTMALTFAHFGPISGLLAYMDDLICCSSTWEGHISLLENTFQALQAAGLTLKPPKVQFGPKEVKYLGHIFSADGIRFGEDRIKSILELPTPTNIKSLRSVLGTINYVRKFIPDLAAVTAPMVELTKK--DAVKSVAKRWGPKHDEAFAEVKRLLTNAPVLHFTDFSKEFVIHVDASEVGAGAFLAQ 219          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LN90_9PHAE1.300e-6760.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K047_9PHAE8.660e-6759.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHS5_9PHAE2.000e-6659.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JGF6_9PHAE1.480e-6259.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3U6_9PHAE1.100e-5956.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KCT5_9PHAE7.240e-5953.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K153_9PHAE7.180e-5753.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JGV3_9PHAE1.900e-5557.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L7Z2_9PHAE2.970e-5551.78Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L2D4_9PHAE6.560e-5551.27Reverse transcriptase domain-containing protein n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.270coord: 93..169
e-value: 2.8E-23
score: 84.7
NoneNo IPR availableGENE3D3.10.20.370coord: 170..195
e-value: 2.8E-23
score: 84.7
NoneNo IPR availableGENE3D3.30.70.270coord: 1..85
e-value: 3.1E-10
score: 41.9
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 1..193
NoneNo IPR availablePANTHERPTHR24559:SF222coord: 1..193
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..195
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.455
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 1..195
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 148..195
e-value: 2.9E-9
score: 36.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19293contigH-paniculata_contig19293:4009..4593 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19293.4870.1mRNA_H-paniculata_contig19293.4870.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig19293 4009..4802 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig19293.4870.1 ID=prot_H-paniculata_contig19293.4870.1|Name=mRNA_H-paniculata_contig19293.4870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
MLFGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSI
KLMFAAGLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLP
KFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGP
AQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041577RT_RNaseH_2