mRNA_H-paniculata_contig19293.4870.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5LN90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN90_9PHAE) HSP 1 Score: 239 bits (609), Expect = 2.240e-71 Identity = 126/212 (59.43%), Postives = 151/212 (71.23%), Query Frame = 3
Query: 171 SFVTSSSKYALLRMLFGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMFAA----GLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 794
+FVT + KY RM FGV + PWLFQ +MS+ LGH+ PDSG+L Y+D + C++ TFE +L S++ MFAA GLTLK KIQFG KEV+Y+ HVIS GIS S DR +AI NLP P IK+LRS+L +VNFVRR I+ YA VTAPLV LT K +F+KAWG AQD F +K + S VL FP FSREFVVHTDASE G GAFLAQ
Sbjct: 40 AFVTPTGKYCFKRMPFGVANAPWLFQHVMSLALGHLGPDSGVLSYMDDLICINHTFEAHLSSLEKMFAALQAAGLTLKPSKIQFGQKEVDYLGHVISAKGISVSTDRIDAIRNLPTPTCIKDLRSVLGMVNFVRRAIKDYADVTAPLVELTRKDYVKRASFKKAWGSAQDAAFENVKRVLSSTPVLHFPDFSREFVVHTDASEQGVGAFLAQ 251
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5K047_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K047_9PHAE) HSP 1 Score: 232 bits (592), Expect = 1.240e-70 Identity = 124/212 (58.49%), Postives = 151/212 (71.23%), Query Frame = 3
Query: 171 SFVTSSSKYALLRMLFGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMFAA----GLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 794
+FVT + KY RM FGV + PWLFQ +MS+ LGH+ PDSG+L Y+D + C++ TF+ +L SI+ MFAA GLTLK KIQFG KEV+Y+ HVIS GIS S DR +AI +L PK IK+LRSIL + NFVRRF++ YA +TAPLV LT K F++AWGP QD F +K A+ SA VL FP FSREFVVHTDASE G GAF AQ
Sbjct: 75 AFVTHNGKYCFKRMPFGVANAPWLFQHVMSIALGHLGPDSGVLSYMDDLICINRTFKTHLVSIEKMFAALQAAGLTLKPSKIQFGRKEVDYLGHVISAKGISVSTDRIDAIRDLSTPKCIKDLRSILGMANFVRRFVKNYADLTAPLVDLTRKDFVKPRKFREAWGPDQDAAFQQLKDALSSAPVLHFPDFSREFVVHTDASELGVGAFPAQ 286
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5JHS5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS5_9PHAE) HSP 1 Score: 231 bits (588), Expect = 2.820e-70 Identity = 124/212 (58.49%), Postives = 149/212 (70.28%), Query Frame = 3
Query: 171 SFVTSSSKYALLRMLFGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMFAA----GLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 794
+FVT + KY RM FGV + PWLFQ +MS+ LGH+ PDSG+L Y+D + C++ TFE +L I+ MFAA GLTLK KIQFG KEV+Y+ HVIS GIS S DR +AI +L PK IK+ RSIL + NFVRRF + YA +TAPLV LT K F++AWGP QD F +K A+ SA VL FP FSREFVVHTDASE G GAFLAQ
Sbjct: 132 AFVTHNGKYCFKRMPFGVANAPWLFQHVMSIALGHLGPDSGVLSYMDDLICINRTFETHLVPIEKMFAALQAAGLTLKPSKIQFGRKEVDYLGHVISAKGISVSTDRIDAIRDLSTPKCIKDFRSILGMANFVRRFAKNYADLTAPLVDLTRKDFVKPRKFREAWGPDQDAAFQQLKDALYSALVLHFPDFSREFVVHTDASELGVGAFLAQ 343
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5JGF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF6_9PHAE) HSP 1 Score: 230 bits (587), Expect = 4.230e-66 Identity = 124/212 (58.49%), Postives = 150/212 (70.75%), Query Frame = 3
Query: 171 SFVTSSSKYALLRMLFGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMFAA----GLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 794
+FVT + KY RM FGV + PWLFQ +MS+ LGH+ PDSG+L Y+D + C++ TFE +L SI+ MFAA GLTLK KIQFG KEV+Y+ HVIS GI S DR +AI ++ PK IK+LRSIL + NFVRRF + YA +TAPLV LT K F++AWGP QD F +K A+ SA VL FP FSREFVVHTDASE G GAFLAQ
Sbjct: 132 AFVTHNGKYCFKRMPFGVANAPWLFQHVMSIALGHLGPDSGVLLYMDNLICINRTFETHLVSIEKMFAALQAAGLTLKPSKIQFGRKEVDYLGHVISAKGIFVSTDRIDAIRDVSTPKCIKDLRSILGMANFVRRFAKNYADLTAPLVDLTRKDFVKPRKFREAWGPDQDAAFQQLKDALYSALVLHFPDFSREFVVHTDASELGVGAFLAQ 343
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5K3U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3U6_9PHAE) HSP 1 Score: 218 bits (556), Expect = 2.000e-63 Identity = 119/212 (56.13%), Postives = 148/212 (69.81%), Query Frame = 3
Query: 171 SFVTSSSKYALLRMLFGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMFAA----GLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 794
+FVT + KY RM FGV + PWLFQ +MS+ LGH+ PDSG+L Y+D + C++ TFE +L SI+ MFAA GL+LK KIQFG KEV+Y+ HVIS GIS S D +AI +L PK IK+LRSIL + NFV F++KYA +TAPLV LT K F++A GP QD F +K+A+ SA + FP FSREFVVHTDAS G GAFLAQ
Sbjct: 132 AFVTHNGKYCFKRMPFGVANAPWLFQHVMSIALGHLGPDSGVLSYMDDLICINRTFETHLVSIEKMFAALQAAGLSLKPSKIQFGRKEVDYLGHVISAKGISVSTDHMDAIRDLSTPKCIKDLRSILGMANFVLCFVKKYADLTAPLVDLTRKDFVKPRKFREARGPDQDAAFQQLKNALSSAPLQYFPDFSREFVVHTDASALGVGAFLAQ 343
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5KCT5_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT5_9PHAE) HSP 1 Score: 213 bits (542), Expect = 2.570e-63 Identity = 114/212 (53.77%), Postives = 142/212 (66.98%), Query Frame = 3
Query: 171 SFVTSSSKYALLRMLFGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMF----AAGLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 794
+FVT+S KY RM FGV + PW+F M LGH+ P+ LL Y+D LS TFE ++KS++ MF AAGLTLK KI FGPK + Y+ H+IS +GIS DR A+ NLP P+ +K+LRS+L +VNFVRRFI YA++T PLV LT K A + F KAW + D +FA +K + SA VL FP F REFVVH DASE G GAFLAQ
Sbjct: 196 AFVTNSGKYCYKRMPFGVCNAPWIFTEMAHKTLGHI-PE--LLIYMDDFCVLSATFENHMKSLESMFVALQAAGLTLKPSKISFGPKSIEYLGHIISAEGISVGKDRIKAVQNLPTPRCLKDLRSVLGVVNFVRRFIPDYAEITNPLVELTRKEYATKSRFVKAWNKSHDASFAHLKRLLTSAPVLHFPDFDREFVVHVDASEHGCGAFLAQ 404
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5K153_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K153_9PHAE) HSP 1 Score: 213 bits (542), Expect = 3.650e-61 Identity = 114/212 (53.77%), Postives = 142/212 (66.98%), Query Frame = 3
Query: 171 SFVTSSSKYALLRMLFGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMF----AAGLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 794
+FVT+S KY RM FGV + PW+F M LGH+ P+ LL Y+D LS TFE ++KS++ MF AAGLTLK KI FGPK + Y+ H+IS +GIS DR A+ NLP P+ +K+LRS+L +VNFVRRFI YA++T PLV LT K A + F KAW + D +FA +K + SA VL FP F REFVVH DASE G GAFLAQ
Sbjct: 219 AFVTNSGKYCYKRMPFGVCNAPWIFTEMAHKTLGHI-PE--LLIYMDDFCVLSATFENHMKSLESMFVALQAAGLTLKPSKISFGPKSIEYLGHIISAEGISVGKDRIKAVQNLPTPRCLKDLRSVLGVVNFVRRFIPDYAEITNPLVELTRKEYATKSRFVKAWNKSHDASFAHLKRLLTSAPVLHFPDFDREFVVHVDASEHGCGAFLAQ 427
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5JGV3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV3_9PHAE) HSP 1 Score: 206 bits (525), Expect = 3.340e-59 Identity = 108/191 (56.54%), Postives = 133/191 (69.63%), Query Frame = 3
Query: 171 SFVTSSSKYALLRMLFGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMFAA----GLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGF 731
+FVT + KY RM FGV + PWLFQ +MS+ LGH+ PDSG+L Y+D + C++ TFE +L S++ MFAA GLTLK KIQFG KEV+Y+ HVIS GIS S DR +AI NLP P IK+LRS+L +VNFVRRFI+ YA VTAPLV LT K +F+KAWG AQD F +K + S VL FP F
Sbjct: 283 AFVTPTGKYCFKRMPFGVANAPWLFQHVMSLALGHLGPDSGVLSYMDDLICINHTFEAHLSSLEKMFAALQAAGLTLKPSKIQFGQKEVDYLGHVISAKGISVSTDRIDAIRNLPTPTCIKDLRSVLGMVNFVRRFIKDYADVTAPLVELTRKDYVKRASFKKAWGSAQDAAFENVKRVLSSTPVLHFPDF 473
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5KB46_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB46_9PHAE) HSP 1 Score: 199 bits (506), Expect = 7.480e-59 Identity = 113/213 (53.05%), Postives = 138/213 (64.79%), Query Frame = 3
Query: 171 SFVTSSSKYALLRMLFGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMF----AAGLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFA-LIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 794
+FVT+S KY RM FGV + PW F M LGH+ P+ LL Y+D LS TFE ++ S+K MF AAGLTLK KI FG K + Y+ H+IS +GIS DR A+ NLP + +K+LRS+L +VNFVRRFI YA++T PLV LT K A + F KAW + D +FA L K + SA VL FP F REFVVH DASE G GAFLAQ
Sbjct: 74 AFVTNSGKYCYKRMPFGVCNAPWNFSEMAHKTLGHI-PE--LLIYMDDFCVLSATFENHMTSLKGMFVALQAAGLTLKPSKISFGLKSIEYLGHIISAEGISVGKDRIKAVQNLPTTRCLKDLRSVLGVVNFVRRFIPDYAEITNPLVELTRKEYATKSRFVKAWNKSHDASFAHLKKRLLTSAPVLHFPDFDREFVVHVDASEHGCGAFLAQ 283
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Match: A0A6H5L7Z2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Z2_9PHAE) HSP 1 Score: 195 bits (495), Expect = 5.740e-58 Identity = 107/212 (50.47%), Postives = 138/212 (65.09%), Query Frame = 3
Query: 171 SFVTSSSKYALLRMLFGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIKLMF----AAGLTLKTPKIQFGPKEVNYIEHVISVDGISGSIDRDNAISNLPLPKFIKELRSILSIVNFVRRFIEKYAKVTAPLVALTTKVQAAEGNFQKAWGPAQDVTFALIKHAMPSATVLKFPGFSREFVVHTDASEAGAGAFLAQ 794
+FVT + K+ R+ FG+ + P+LFQR M++ H P SGLL Y+D + C S T+E +LK ++ F AAGLTLK K+QFGP+EV Y+ H+ S DGI DR AI ++P P IKELRS+L VN+VR+FI A VTAPLV LT K A + K WGP D FA +K + +A +L FP FS+EFV+H DAS AG GAFLAQ
Sbjct: 40 AFVTRNGKWVFKRLPFGIANAPFLFQRTMALAFAHFGPKSGLLVYMDDLICCSSTWEGHLKLLENTFQALQAAGLTLKPSKVQFGPQEVKYLGHIPSSDGIRLGEDRIKAILDIPTPTNIKELRSVLGTVNYVRKFIPNLATVTAPLVDLTKK--EAMKSVAKRWGPEHDEAFAEVKKLLAAAPLLNFPDFSKEFVIHVDASNAGTGAFLAQ 249 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19293.4870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19293.4870.1 >prot_H-paniculata_contig19293.4870.1 ID=prot_H-paniculata_contig19293.4870.1|Name=mRNA_H-paniculata_contig19293.4870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp MLFGVMSTPWLFQRMMSVVLGHVVPDSGLLRYIDCISCLSPTFEENLKSIback to top mRNA from alignment at H-paniculata_contig19293:4009..4802- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig19293.4870.1 ID=mRNA_H-paniculata_contig19293.4870.1|Name=mRNA_H-paniculata_contig19293.4870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=794bp|location=Sequence derived from alignment at H-paniculata_contig19293:4009..4802- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig19293:4009..4802- >mRNA_H-paniculata_contig19293.4870.1 ID=mRNA_H-paniculata_contig19293.4870.1|Name=mRNA_H-paniculata_contig19293.4870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig19293:4009..4802- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |