mRNA_H-paniculata_contig19288.4866.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19288.4866.1
Unique NamemRNA_H-paniculata_contig19288.4866.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19288.4866.1 vs. uniprot
Match: A0A183R1W1_9TREM (Uncharacterized protein n=1 Tax=Schistosoma rodhaini TaxID=6188 RepID=A0A183R1W1_9TREM)

HSP 1 Score: 51.6 bits (122), Expect = 5.430e-6
Identity = 28/70 (40.00%), Postives = 38/70 (54.29%), Query Frame = 1 
Query:   88 WVRYFSNLLNTKTANMDPTIVDQVDQQPEFARVADEPTIDEIKFVLRRTVNGKAVEPDELPTELSKFGVR 297
            WV YF  LLN   ++  P I       P  A     PTI+E+K  +R+T NGKAV PD +P+E  K  ++
Sbjct:   44 WVEYFEELLNRPDSSNSPDIEAAHTDLPISATP---PTIEEVKMAIRQTKNGKAVGPDNIPSEALKSDIK 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19288.4866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A183R1W1_9TREM5.430e-640.00Uncharacterized protein n=1 Tax=Schistosoma rodhai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19288contigH-paniculata_contig19288:4210..4524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929471.1036363-CDS-H-paniculata_contig19288:4209..45241622929471.1036363-CDS-H-paniculata_contig19288:4209..4524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19288 4210..4524 +
1691480875.9148483-CDS-H-paniculata_contig19288:4209..45241691480875.9148483-CDS-H-paniculata_contig19288:4209..4524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19288 4210..4524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19288.4866.1prot_H-paniculata_contig19288.4866.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19288 4210..4524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19288.4866.1

>prot_H-paniculata_contig19288.4866.1 ID=prot_H-paniculata_contig19288.4866.1|Name=mRNA_H-paniculata_contig19288.4866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
LEKKRPCTSQYVMDELGNLVENKSLILKHWVRYFSNLLNTKTANMDPTIV
DQVDQQPEFARVADEPTIDEIKFVLRRTVNGKAVEPDELPTELSKFGVRE
EPIL*
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mRNA from alignment at H-paniculata_contig19288:4210..4524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19288.4866.1 ID=mRNA_H-paniculata_contig19288.4866.1|Name=mRNA_H-paniculata_contig19288.4866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at H-paniculata_contig19288:4210..4524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGAAAAGAAGCGGCCGTGCACGTCTCAGTACGTGATGGACGAACTGGG
CAACCTGGTGGAGAACAAGTCGTTGATCCTCAAACACTGGGTACGGTACT
TCTCCAACCTCCTCAACACGAAGACTGCCAATATGGACCCTACGATCGTT
GACCAAGTCGATCAACAGCCTGAATTCGCTCGTGTCGCGGATGAACCGAC
AATCGATGAAATTAAGTTCGTGTTGCGCAGGACGGTGAATGGGAAAGCAG
TTGAACCGGATGAACTCCCTACTGAGCTCTCGAAGTTCGGTGTGCGTGAG
GAACCCATCTTGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig19288:4210..4524+

>mRNA_H-paniculata_contig19288.4866.1 ID=mRNA_H-paniculata_contig19288.4866.1|Name=mRNA_H-paniculata_contig19288.4866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig19288:4210..4524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGAAAAGAAGCGGCCGTGCACGTCTCAGTACGTGATGGACGAACTGGG
CAACCTGGTGGAGAACAAGTCGTTGATCCTCAAACACTGGGTACGGTACT
TCTCCAACCTCCTCAACACGAAGACTGCCAATATGGACCCTACGATCGTT
GACCAAGTCGATCAACAGCCTGAATTCGCTCGTGTCGCGGATGAACCGAC
AATCGATGAAATTAAGTTCGTGTTGCGCAGGACGGTGAATGGGAAAGCAG
TTGAACCGGATGAACTCCCTACTGAGCTCTCGAAGTTCGGTGTGCGTGAG
GAACCCATCTTGTAACTCGAAAAGAAGCGGCCGTGCACGTCTCAGTACGT
GATGGACGAACTGGGCAACCTGGTGGAGAACAAGTCGTTGATCCTCAAAC
ACTGGGTACGGTACTTCTCCAACCTCCTCAACACGAAGACTGCCAATATG
GACCCTACGATCGTTGACCAAGTCGATCAACAGCCTGAATTCGCTCGTGT
CGCGGATGAACCGACAATCGATGAAATTAAGTTCGTGTTGCGCAGGACGG
TGAATGGGAAAGCAGTTGAACCGGATGAACTCCCTACTGAGCTCTCGAAG
TTCGGTGTGCGTGAGGAACCCATCTTGTAA
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