mRNA_H-paniculata_contig19285.4864.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19285.4864.1
Unique NamemRNA_H-paniculata_contig19285.4864.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig19285.4864.1 vs. uniprot
Match: A0A6H5KY95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY95_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 3.350e-55
Identity = 101/164 (61.59%), Postives = 125/164 (76.22%), Query Frame = 2 
Query:  467 PEGTSGDGPVGEGGVTAVFGEVLQGEKSLEALFSDDWSGMQANTGMVKSKVKLPDISEFVPKKRLEAETLEQRQKKTAVGLTVGKGSPEKE--LPSSKLT-LDSKLSPLVDREEEAYQKRVAERFEEGPVVKALKTATWFAICALVVWEVYINSPFFSTPPPPP 949
            P   SG G   EGGV    G+VL+G++S+EALF+DDWSGM ANTGM KS V LPDISEF P +R E+ TLEQR+KK+AVGL VG G  + +  +P+S+L   +SKL+P+VDREEE  QK  AERFEEGP+V+ LKTATWF+IC LV+WE+YINSP+F  P  PP
Sbjct:  138 PAADSGAGAGAEGGV-GELGDVLEGDRSVEALFTDDWSGMPANTGMTKSNVPLPDISEFKPSRRAES-TLEQREKKSAVGLVVGAGDGDDDDAVPASRLAGFESKLTPIVDREEERRQKNAAERFEEGPIVRGLKTATWFSICTLVLWEIYINSPWFHAPESPP 299
[Close]
BLAST of mRNA_H-paniculata_contig19285.4864.1 vs. uniprot
Match: D8LB46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB46_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.920e-53
Identity = 94/148 (63.51%), Postives = 116/148 (78.38%), Query Frame = 2 
Query:  521 FGEVLQGEKSLEALFSDDWSGMQANTGMVKSKVKLPDISEFVPKKRLEAETLEQRQKKTAVGLTVGKGSPEKE----LPSSKLT-LDSKLSPLVDREEEAYQKRVAERFEEGPVVKALKTATWFAICALVVWEVYINSPFFSTPPPPP 949
             G+VL+G++S+EALFSDDWSGM ANTGM KS V LPDISEF P +R E+ TLEQR+KK+AVGL VG G    +    +P+S+L   +SKL+P+VDREEE  +K  AERFEEGP+V+ LKTATWF+IC LV+WEVYINSP+F  P  PP
Sbjct:   60 LGDVLEGDRSVEALFSDDWSGMPANTGMTKSNVPLPDISEFKPSRRAES-TLEQREKKSAVGLVVGPGDGSDDDGDAVPASRLAGFESKLTPIVDREEEWRKKNAAERFEEGPIVRGLKTATWFSICTLVLWEVYINSPWFHAPESPP 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19285.4864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY95_9PHAE3.350e-5561.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB46_ECTSI1.920e-5363.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19285contigH-paniculata_contig19285:696..3958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_005260.1
Exons2
Model size1295
Cds size945
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19285.4864.1prot_H-paniculata_contig19285.4864.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19285 706..3618 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929470.9620404-UTR-H-paniculata_contig19285:695..7051622929470.9620404-UTR-H-paniculata_contig19285:695..705Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19285 696..705 +
1691480875.8640702-UTR-H-paniculata_contig19285:695..7051691480875.8640702-UTR-H-paniculata_contig19285:695..705Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19285 696..705 +
1622929471.0093327-UTR-H-paniculata_contig19285:3618..39581622929471.0093327-UTR-H-paniculata_contig19285:3618..3958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19285 3619..3958 +
1691480875.898547-UTR-H-paniculata_contig19285:3618..39581691480875.898547-UTR-H-paniculata_contig19285:3618..3958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19285 3619..3958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929470.975717-CDS-H-paniculata_contig19285:705..13111622929470.975717-CDS-H-paniculata_contig19285:705..1311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19285 706..1311 +
1691480875.8745222-CDS-H-paniculata_contig19285:705..13111691480875.8745222-CDS-H-paniculata_contig19285:705..1311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19285 706..1311 +
1622929470.996028-CDS-H-paniculata_contig19285:3279..36181622929470.996028-CDS-H-paniculata_contig19285:3279..3618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19285 3280..3618 +
1691480875.8840773-CDS-H-paniculata_contig19285:3279..36181691480875.8840773-CDS-H-paniculata_contig19285:3279..3618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19285 3280..3618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19285.4864.1

>prot_H-paniculata_contig19285.4864.1 ID=prot_H-paniculata_contig19285.4864.1|Name=mRNA_H-paniculata_contig19285.4864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=315bp
MFVYTEAPRFVFATRDTMHSTRALLAVTAVIACLLRSADGFVVPLNKILL
GPRHHGSSETTRTHDDHHHHHRHNGYASTTATATTLLRLRPHSRSTTSNH
VLMATGDKKRRRRKGTPATSPAEDSAKAAPAAAAAAASTPSKASAKKDGG
ASPEGTSGDGPVGEGGVTAVFGEVLQGEKSLEALFSDDWSGMQANTGMVK
SKVKLPDISEFVPKKRLEAETLEQRQKKTAVGLTVGKGSPEKELPSSKLT
LDSKLSPLVDREEEAYQKRVAERFEEGPVVKALKTATWFAICALVVWEVY
INSPFFSTPPPPPI*
back to top

mRNA from alignment at H-paniculata_contig19285:696..3958+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19285.4864.1 ID=mRNA_H-paniculata_contig19285.4864.1|Name=mRNA_H-paniculata_contig19285.4864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3263bp|location=Sequence derived from alignment at H-paniculata_contig19285:696..3958+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCTCGATCATGTTCGTATACACAGAGGCACCGAGATTCGTGTTTGCGA
CAAGAGACACGATGCACTCCACGAGGGCCCTGTTGGCAGTAACAGCGGTC
ATCGCTTGCCTCTTGCGTAGTGCCGATGGCTTCGTCGTGCCCCTCAACAA
GATCCTCTTGGGACCCAGGCATCATGGTAGCAGTGAGACAACAAGAACAC
ATGATGATCATCACCATCACCACCGTCATAACGGCTATGCATCCACCACT
GCAACCGCAACCACTCTGCTACGGCTACGCCCTCACAGCCGCTCAACAAC
ATCGAATCATGTGCTGATGGCTACGGGGGATAAAAAACGCCGGCGAAGGA
AAGGCACCCCAGCAACATCGCCAGCGGAGGATAGTGCCAAGGCCGCTCCA
GCAGCAGCAGCAGCAGCAGCAAGCACGCCTTCCAAAGCTTCCGCGAAGAA
AGATGGTGGCGCAAGTCCTGAAGGCACTAGCGGCGACGGACCGGTTGGCG
AGGGGGGAGTAACAGCTGTGTTTGGTGAGGTGCTACAAGGAGAGAAGTCG
CTGGAAGCTCTATTCTCTGATGATTGGTCGGGCATGCAGGCGAACACGGG
GATGGTCAAGTCAAAGGTTGGTGCAACGCCTCGGGGGCATGGGAGAGATG
GCGGGGAGTTGGTCAAATCACAGTTGGTAGACACGGCGCTCGCGGGGGCG
TGGGGGTGAGGGTTGATATGTTTGCAGCATTTTCAGCATACACTTGAATT
TGCTGAACAGGATGGACATGTAATCGACTCTTCAACTAGTGATAGAGCTC
GGTTTTGGGAGCGATGTGTGTTGCGAAGGGGGGGGCGTGAGGGGTCCTCA
TGCGTTTTCGGGTGCAAATCCAGGTGTTGGCGTGTTTACCCAATTTCAAT
GTCTTCGGGTCATGTTGGTGATGGTGCTCTAGCTGTGCTGCACACCTTAC
TCGCTGTTTCTCCCTGTTCTTTCCGAGATTTGGAGAATATCGCCATGTGA
AGATGTTGGACCAGAGCATGTTGGTCATCGCTTCCGAGTGGTGCATACAG
AGGGTGCACACTCTGGGGTGGAAAGGAAATGTTGGTCGTCGAATGTACTT
GAAACTGTAGCTGTAGGTCGATTTGAGACGAGTTGATCCTCTATTTACCC
CGCATATTAGCGGAGTAACTATCACGGGAAAGATGCCTAACAGAAGCTTG
GTGGCAGAGTGTCTTAACACTGCAGACGTGTAGCCTTAATTGATGTCTGT
CCCCCTTTGAAAATAGCATGAGGATACACAACCGAGGTAGTGTTGGCAGC
ACAGACTGACCCAGATCTCCCTCACCACAGCGCACCCCAGGCAAGAACAA
ATCCCCATGACATGGCTGCACCCTATCCGATTTAGTACGTCCTCCCGAGC
TGAAGCCAAGGACCTTTGGCGCGTTTGCTTTGATCGTCATGATATCGTCA
CCTTCGTCAGGGGTTCCTGCAAATACCGGCAGTACAATACCGGCCCGTTT
CATAAGAAATGTGACTAAGAAACAAGAGTGTGGTGTTGAGTATTTTAAGA
AACAGCAAAACCTAGGGTCGGGCCGCAACTTGAAAGCTAGTTGGAAAAAA
ATAAATCGGGTTCCTTGCTTCCCCCTATTTCAACTTCTCATAAGCGGCGC
GATACTGCACACATTCTAAACGAAGCCCCTGCTCCCCGCCTGTCGATGTT
ATTAATTTCAAAGAAAAATTGATACAGCCGGCGCTCATCGGGGAATCTTC
ACAAGTCGGGAGATGGTTCGATCTCATCTCATCACTTATATAGGGAATGG
CCTCATCCCGTCCCGACGGTCGTTCCTACAAGGAAGAGACACTAGGTTCC
ACCCGGTCCCGGCCGATCCTCACGGGACTGGTGCTACTGTTCCAAGTACA
GAAACCAATGAGACGTTCGAGCAACTATTATTGGGTGAAATCACATCACA
TCAGAATAACAGAATTAATACAACCACAGACAAGTTTGTAGGGCATGATG
AAACCCGGTCTGTCCTTCCCGTCTCGCTCCATTCCCGTACAAAGCACATG
GTCCCGTAGGGAATGGAACATATATTTCACGGTACAGTTTAAATTCGACC
CTGTTTCTTCATAATTTTGAGCTTCCCGATTACATACATCGGTCTTAAAC
CCGTCAAATGTTCACTCTCCACCCTGTCCCGAGGTCTAGCGATGAGCCGT
CGATCTCACAATATCCCCTCCCTCCCATGCATTAACCGAAGAAACACCTG
AAGCCTAAATTTGTCTGATCCCCGACATTCGGTAACACAGAGACAAGCGC
TTTCATTTATTGCCAACCACCCCCCGTCGAACACCCACCCATACATGCAC
ATACACACATACACATATGGCGATCTAGAAAAGAGCGATTTGCCATCGGC
GATCGTGCTGATTGGAACAAAGCTTGGTCCTCTCGAGAACGCGTAGTCAA
TTGTCTAACAACCGTGGCATCCAAAACATGACCTCCCCCCTGAACCCTCT
TCCAACCCCCCCCCATGGTCCTCCTGTGCTGTCAACCAAAACTCTCAACT
CTCGATGTCATGCATATGCTATGTGTACACACAGGTAAAACTCCCAGATA
TCTCGGAATTCGTACCCAAGAAGAGGCTCGAGGCCGAAACGCTGGAACAG
CGGCAGAAAAAGACAGCCGTGGGGTTGACCGTCGGCAAGGGCTCCCCCGA
AAAGGAACTGCCGTCGAGTAAGCTGACCTTGGACTCCAAGCTGTCGCCGC
TGGTAGACAGGGAGGAGGAGGCCTACCAAAAACGCGTGGCCGAGAGATTT
GAGGAAGGGCCGGTGGTCAAGGCGCTGAAGACGGCCACTTGGTTCGCGAT
CTGCGCGTTGGTAGTTTGGGAAGTCTACATCAATTCGCCATTCTTCTCGA
CCCCACCTCCGCCGCCGATTTAGTGAAAAATGAATGGTTATTTGCGCATT
TTGACGTTTTATTCGTGCGGTGTAACCGCTACAGTATATACATACATATC
ACACGTTGTATGCTCTCCTTTTATCACCTGACGCGCGAGGGTGGCGGTGA
TGGTCTTTCCAGCAAGTTCGAAATTACAAAAAATATGTGAGGAATATTGT
GCGTATATTATCTGCCGACGTATTGCAACCGGCCGCTGCGAGCGCAGCGG
ATCGTCGTGCGTGCGTCGACGGCTTGGTACATAATCTAGACAGTGGCGAG
TATTACACAAACGCAAAACCACCGCAAACAAAATTTTATGAATCGTTGAA
ACATTGCAAGCTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig19285:696..3958+

>mRNA_H-paniculata_contig19285.4864.1 ID=mRNA_H-paniculata_contig19285.4864.1|Name=mRNA_H-paniculata_contig19285.4864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1890bp|location=Sequence derived from alignment at H-paniculata_contig19285:696..3958+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGTATACACAGAGGCACCGAGATTCGTGTTTGCGACAAGAGACAC
GATGCACTCCACGAGGGCCCTGTTGGCAGTAACAGCGGTCATCGCTTGCC
TCTTGCGTAGTGCCGATGGCTTCGTCGTGCCCCTCAACAAGATCCTCTTG
GGACCCAGGCATCATGGTAGCAGTGAGACAACAAGAACACATGATGATCA
TCACCATCACCACCGTCATAACGGCTATGCATCCACCACTGCAACCGCAA
CCACTCTGCTACGGCTACGCCCTCACAGCCGCTCAACAACATCGAATCAT
GTGCTGATGGCTACGGGGGATAAAAAACGCCGGCGAAGGAAAGGCACCCC
AGCAACATCGCCAGCGGAGGATAGTGCCAAGGCCGCTCCAGCAGCAGCAG
CAGCAGCAGCAAGCACGCCTTCCAAAGCTTCCGCGAAGAAAGATGGTGGC
GCAAGTCCTGAAGGCACTAGCGGCGACGGACCGGTTGGCGAGGGGGGAGT
AACAGCTGTGTTTGGTGAGGTGCTACAAGGAGAGAAGTCGCTGGAAGCTC
TATTCTCTGATGATTGGTCGGGCATGCAGGCGAACACGGGGATGGTCAAG
TCAAAGATGTTCGTATACACAGAGGCACCGAGATTCGTGTTTGCGACAAG
AGACACGATGCACTCCACGAGGGCCCTGTTGGCAGTAACAGCGGTCATCG
CTTGCCTCTTGCGTAGTGCCGATGGCTTCGTCGTGCCCCTCAACAAGATC
CTCTTGGGACCCAGGCATCATGGTAGCAGTGAGACAACAAGAACACATGA
TGATCATCACCATCACCACCGTCATAACGGCTATGCATCCACCACTGCAA
CCGCAACCACTCTGCTACGGCTACGCCCTCACAGCCGCTCAACAACATCG
AATCATGTGCTGATGGCTACGGGGGATAAAAAACGCCGGCGAAGGAAAGG
CACCCCAGCAACATCGCCAGCGGAGGATAGTGCCAAGGCCGCTCCAGCAG
CAGCAGCAGCAGCAGCAAGCACGCCTTCCAAAGCTTCCGCGAAGAAAGAT
GGTGGCGCAAGTCCTGAAGGCACTAGCGGCGACGGACCGGTTGGCGAGGG
GGGAGTAACAGCTGTGTTTGGTGAGGTGCTACAAGGAGAGAAGTCGCTGG
AAGCTCTATTCTCTGATGATTGGTCGGGCATGCAGGCGAACACGGGGATG
GTCAAGTCAAAGGTAAAACTCCCAGATATCTCGGAATTCGTACCCAAGAA
GAGGCTCGAGGCCGAAACGCTGGAACAGCGGCAGAAAAAGACAGCCGTGG
GGTTGACCGTCGGCAAGGGCTCCCCCGAAAAGGAACTGCCGTCGAGTAAG
CTGACCTTGGACTCCAAGCTGTCGCCGCTGGTAGACAGGGAGGAGGAGGC
CTACCAAAAACGCGTGGCCGAGAGATTTGAGGAAGGGCCGGTGGTCAAGG
CGCTGAAGACGGCCACTTGGTTCGCGATCTGCGCGTTGGTAGTTTGGGAA
GTCTACATCAATTCGCCATTCTTCTCGACCCCACCTCCGCCGCCGATTTA
GGTAAAACTCCCAGATATCTCGGAATTCGTACCCAAGAAGAGGCTCGAGG
CCGAAACGCTGGAACAGCGGCAGAAAAAGACAGCCGTGGGGTTGACCGTC
GGCAAGGGCTCCCCCGAAAAGGAACTGCCGTCGAGTAAGCTGACCTTGGA
CTCCAAGCTGTCGCCGCTGGTAGACAGGGAGGAGGAGGCCTACCAAAAAC
GCGTGGCCGAGAGATTTGAGGAAGGGCCGGTGGTCAAGGCGCTGAAGACG
GCCACTTGGTTCGCGATCTGCGCGTTGGTAGTTTGGGAAGTCTACATCAA
TTCGCCATTCTTCTCGACCCCACCTCCGCCGCCGATTTAG
back to top