mRNA_H-paniculata_contig19273.4862.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19273.4862.1
Unique NamemRNA_H-paniculata_contig19273.4862.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig19273.4862.1 vs. uniprot
Match: A0A6H5KF89_9PHAE (HEAT repeat-containing protein 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF89_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 7.240e-28
Identity = 56/73 (76.71%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    1 GLQRLEAMNPGFSPFQSTLFSKEAEKTLRDLQTPEASRRIDESIALFLALLSPHFNSREAHLCLEYLIRHFKV 219
            GLQRLEA++  FSPFQ TLFSKEAE TLRDLQT E++ RID+SI+ FLALLSPHF+ REAH CLEYLIRH+KV
Sbjct:   55 GLQRLEAVDQDFSPFQDTLFSKEAEGTLRDLQTKESNERIDKSISAFLALLSPHFSCREAHFCLEYLIRHYKV 127
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BLAST of mRNA_H-paniculata_contig19273.4862.1 vs. uniprot
Match: D7FJ23_ECTSI (HEAT repeat-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ23_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.430e-27
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    1 GLQRLEAMNPGFSPFQSTLFSKEAEKTLRDLQTPEASRRIDESIALFLALLSPHFNSREAHLCLEYLIRHFKV 219
            GLQRLEA++  FSPFQ TLFSKEAE TLRDLQT E++ RID+SI+ FLALLSPHF  REAH CLEYLIRH+KV
Sbjct:   55 GLQRLEAVDQDFSPFQDTLFSKEAEGTLRDLQTKESNDRIDKSISAFLALLSPHFACREAHFCLEYLIRHYKV 127
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BLAST of mRNA_H-paniculata_contig19273.4862.1 vs. uniprot
Match: S4RN64_PETMA (HEAT repeat-containing protein 1 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RN64_PETMA)

HSP 1 Score: 70.1 bits (170), Expect = 2.510e-12
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 GLQRLEAMNPGFSPFQSTLFSKEAEKTLRDLQTPEASRRIDESIALFLALLSPHFNSREAHLCLEYLIRHFKV 219
            GL+ L  + P F  F+ TLFS+ +++  R +Q+ + + R+DESIALFLA LSP F  R AH CLE+L+  F +
Sbjct:   52 GLEELAGIEPAFDDFRDTLFSEASKRMERSVQSRDVNARLDESIALFLARLSPFFLLRPAHKCLEWLLYRFHI 124
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BLAST of mRNA_H-paniculata_contig19273.4862.1 vs. uniprot
Match: UPI001F076C6C (HEAT repeat-containing protein 1 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F076C6C)

HSP 1 Score: 61.6 bits (148), Expect = 2.510e-9
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    1 GLQRLEAMNPGFSPFQSTLFSKEAEKTLRDLQTPEASRRIDESIALFLALLSPHFNSREAHLCLEYLIRHFKV 219
            GL+ L  +   F+ FQ TLFS+ +    R +Q+ E + ++DESI+LFLA LSP+F  + A  CLE+L+  F +
Sbjct:   51 GLEELLGIEQAFTEFQDTLFSQASMGMERSVQSKEINDKLDESISLFLARLSPYFLLKPAQKCLEWLVHRFYI 123
[Close]
BLAST of mRNA_H-paniculata_contig19273.4862.1 vs. uniprot
Match: UPI001C4B486F (HEAT repeat-containing protein 1 n=2 Tax=Thunnus TaxID=8234 RepID=UPI001C4B486F)

HSP 1 Score: 61.6 bits (148), Expect = 2.510e-9
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:    1 GLQRLEAMNPGFSPFQSTLFSKEAEKTLRDLQTPEASRRIDESIALFLALLSPHFNSREAHLCLEYLIRHFKV 219
            GL+ L  + P FS FQ TLFS+ +    R +Q+ E + ++D  I+LFL  L P+F  + AH C+E+L+  F +
Sbjct:   51 GLEELLGIEPVFSEFQDTLFSRASLTLERSVQSKEVNEKLDAGISLFLTRLCPYFLLKPAHKCIEWLVHRFHI 123
[Close]
BLAST of mRNA_H-paniculata_contig19273.4862.1 vs. uniprot
Match: A0A0L1KW91_9EUGL (HEAT repeat-containing protein 1 n=2 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0L1KW91_9EUGL)

HSP 1 Score: 61.6 bits (148), Expect = 2.510e-9
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    1 GLQRLEAMNPGFSPFQSTLFSKEAEKTLRDLQTPEASRRIDESIALFLALLSPHFNSREAHLCLEYLIRHFKV 219
            GL  L  +N  FS +Q+T+F +   K  R++ + E +  I+ESI +FL+LLSP+F    AH CLEYL++ F +
Sbjct:   50 GLHGLIQLNTNFSSYQNTVFKESFMKIDREVASKEYNEAINESIRIFLSLLSPYFLYTHAHYCLEYLLQVFHI 122
[Close]
BLAST of mRNA_H-paniculata_contig19273.4862.1 vs. uniprot
Match: A0A1A9WXC5_9MUSC (HEAT repeat-containing protein 1 n=1 Tax=Glossina brevipalpis TaxID=37001 RepID=A0A1A9WXC5_9MUSC)

HSP 1 Score: 58.5 bits (140), Expect = 3.060e-8
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:    1 GLQRLEAMNPGFSPFQSTLFSKEAEKTLRDLQTPEASRRIDESIALFLALLSPHFNSREAHLCLEYLIRHFKV 219
            GL+ L  +NP F  F++TLF +   +  R  +  + ++ +D +I  F   LSP+F  R AH+CLE+LIR F+V
Sbjct:   51 GLEELILLNPSFQQFKTTLFDEATIQIERATEHKDINQLLDCNIRKFFCYLSPYFLLRPAHMCLEWLIRRFRV 123
[Close]
BLAST of mRNA_H-paniculata_contig19273.4862.1 vs. uniprot
Match: A0A1Y2FJC1_9FUNG (U3 small nucleolar RNA-associated protein 10 n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2FJC1_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 2.000e-7
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:    1 GLQRLEAMNPGFSPFQSTLFSKEAEKTLRDLQTPEASRRIDESIALFLALLSPHFNSREAHLCLEYLIRHFKV 219
            GL+ L+     F+ ++ TLFS   +   R  QT   + ++DESI +FL LLSPHF    A   LE+LIR +K+
Sbjct:   50 GLESLKQYEKRFANYEKTLFSLTMKNINRAQQTNAENEKLDESINMFLRLLSPHFLDNAAGKALEWLIRRYKI 122
[Close]
BLAST of mRNA_H-paniculata_contig19273.4862.1 vs. uniprot
Match: A0A1Y1X5K8_9FUNG (U3 small nucleolar RNA-associated protein 10 n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1X5K8_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 3.740e-7
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:    1 GLQRLEAMNPGFSPFQSTLFSKEAEKTLRDLQTPEASRRIDESIALFLALLSPHFNSREAHLCLEYLIRHFKV 219
            GL+ L+     F+ ++ TLFS   +   R  QT   + ++DESI +FL LLSPHF    A   LE+LIR +K+
Sbjct:   50 GLESLKQYEKRFANYEKTLFSLTMKNINRAQQTNAENDKLDESINMFLRLLSPHFLDNAAGKALEWLIRRYKI 122
[Close]
BLAST of mRNA_H-paniculata_contig19273.4862.1 vs. uniprot
Match: A0A1Y1VL21_9FUNG (U3 small nucleolar RNA-associated protein 10 n=2 Tax=Piromyces TaxID=4821 RepID=A0A1Y1VL21_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 9.550e-7
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:    1 GLQRLEAMNPGFSPFQSTLFSKEAEKTLRDLQTPEASRRIDESIALFLALLSPHFNSREAHLCLEYLIRHFKV 219
            GL+ L+     F+ ++ TLFS   +   R  QT   + ++D+SI +FL LLSPHF    A   LE+LIR +K+
Sbjct:   50 GLESLKQYEKRFANYEKTLFSLTMKNINRLQQTNAENEKLDDSINMFLRLLSPHFLDNAAGKALEWLIRRYKI 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19273.4862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KF89_9PHAE7.240e-2876.71HEAT repeat-containing protein 1 n=1 Tax=Ectocarpu... [more]
D7FJ23_ECTSI3.430e-2776.71HEAT repeat-containing protein 1 n=1 Tax=Ectocarpu... [more]
S4RN64_PETMA2.510e-1246.58HEAT repeat-containing protein 1 n=1 Tax=Petromyzo... [more]
UPI001F076C6C2.510e-942.47HEAT repeat-containing protein 1 n=1 Tax=Hypomesus... [more]
UPI001C4B486F2.510e-939.73HEAT repeat-containing protein 1 n=2 Tax=Thunnus T... [more]
A0A0L1KW91_9EUGL2.510e-942.47HEAT repeat-containing protein 1 n=2 Tax=Perkinsel... [more]
A0A1A9WXC5_9MUSC3.060e-839.73HEAT repeat-containing protein 1 n=1 Tax=Glossina ... [more]
A0A1Y2FJC1_9FUNG2.000e-741.10U3 small nucleolar RNA-associated protein 10 n=1 T... [more]
A0A1Y1X5K8_9FUNG3.740e-741.10U3 small nucleolar RNA-associated protein 10 n=1 T... [more]
A0A1Y1VL21_9FUNG9.550e-739.73U3 small nucleolar RNA-associated protein 10 n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19273contigH-paniculata_contig19273:4125..4772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue7e-19
Seed eggNOG ortholog2880.D7FJ23
KEGG koko:K14550
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.rRNA processing
EggNOG OGsKOG1837@1,KOG1837@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons2
Model size225
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19273.4862.1prot_H-paniculata_contig19273.4862.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19273 4146..4772 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929470.8548412-UTR-H-paniculata_contig19273:4124..41451622929470.8548412-UTR-H-paniculata_contig19273:4124..4145Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19273 4125..4145 +
1691480875.823517-UTR-H-paniculata_contig19273:4124..41451691480875.823517-UTR-H-paniculata_contig19273:4124..4145Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19273 4125..4145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929470.8688366-CDS-H-paniculata_contig19273:4145..41721622929470.8688366-CDS-H-paniculata_contig19273:4145..4172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19273 4146..4172 +
1691480875.8358111-CDS-H-paniculata_contig19273:4145..41721691480875.8358111-CDS-H-paniculata_contig19273:4145..4172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19273 4146..4172 +
1622929470.885012-CDS-H-paniculata_contig19273:4595..47721622929470.885012-CDS-H-paniculata_contig19273:4595..4772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19273 4596..4772 +
1691480875.8453624-CDS-H-paniculata_contig19273:4595..47721691480875.8453624-CDS-H-paniculata_contig19273:4595..4772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19273 4596..4772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19273.4862.1

>prot_H-paniculata_contig19273.4862.1 ID=prot_H-paniculata_contig19273.4862.1|Name=mRNA_H-paniculata_contig19273.4862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MNPGFSPFQSTLFSKEAEKTLRDLQTPEASRRIDESIALFLALLSPHFNS
REAHLCLEYLIRHFKVRK
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mRNA from alignment at H-paniculata_contig19273:4125..4772+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19273.4862.1 ID=mRNA_H-paniculata_contig19273.4862.1|Name=mRNA_H-paniculata_contig19273.4862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=648bp|location=Sequence derived from alignment at H-paniculata_contig19273:4125..4772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTGCAGCGACTGGAAGCTATGAACCCTGGATTTTCTCCCTTTCAGGT
GGAATATTGAGACTGCGCATGTCTTGGCGGTGTTGTGTGAAACCATGTTT
ATCGAAGCGAACACCACTTCGCACCTAAAAATCAACTTGCCCGAACCAAA
ATCGTGAATACGTCGTATGTACTGTAGTGATTATGAGTTGAACTTCCATC
GCGCTCCTCTTTGCCTCTCGGTGCGGACTCCACCCACCCAGCACCGAGTC
TTCCATTACGGCGGCGCAAGATTACCGTTTGACAGCGGGGGGTTTCTGGG
CATTCCTGGTCTTCACAACATTCCACTGAGATCCCGGACAATCAGAGCCC
GCGCATTTCTTGTATTGCAAACAATTTCCACTGTCATTAATTATGTGGGT
GTATCTTTTTTTGTAATCAAGCACTCGACTTTCCCCTTTTTTGTGTTGGG
ATGTTAATCTGTCAACGGCAGAGTACATTGTTCAGTAAAGAAGCCGAGAA
GACCTTGCGAGATCTTCAGACGCCAGAGGCGAGCCGGCGAATAGATGAAA
GCATCGCTTTATTTCTCGCTCTGTTATCGCCGCACTTCAACTCTCGAGAG
GCGCACCTTTGCCTTGAATACCTTATCAGACACTTTAAGGTGAGGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig19273:4125..4772+

>mRNA_H-paniculata_contig19273.4862.1 ID=mRNA_H-paniculata_contig19273.4862.1|Name=mRNA_H-paniculata_contig19273.4862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig19273:4125..4772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCCTGGATTTTCTCCCTTTCAGATGAACCCTGGATTTTCTCCCTT
TCAGAGTACATTGTTCAGTAAAGAAGCCGAGAAGACCTTGCGAGATCTTC
AGACGCCAGAGGCGAGCCGGCGAATAGATGAAAGCATCGCTTTATTTCTC
GCTCTGTTATCGCCGCACTTCAACTCTCGAGAGGCGCACCTTTGCCTTGA
ATACCTTATCAGACACTTTAAGGTGAGGAAAAGTACATTGTTCAGTAAAG
AAGCCGAGAAGACCTTGCGAGATCTTCAGACGCCAGAGGCGAGCCGGCGA
ATAGATGAAAGCATCGCTTTATTTCTCGCTCTGTTATCGCCGCACTTCAA
CTCTCGAGAGGCGCACCTTTGCCTTGAATACCTTATCAGACACTTTAAGG
TGAGGAAA
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