mRNA_H-paniculata_contig19251.4856.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19251.4856.1
Unique NamemRNA_H-paniculata_contig19251.4856.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19251.4856.1 vs. uniprot
Match: A0A6H5KXW1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXW1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.450e-12
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 3 
Query:  159 NPLRDHADVLRHLMPFASREGYLFVAGVCKNWRMAWG-DRPKKSDISVAVQSVSCLAWARDNDGCWNREKCKRTQAFGCRHKPPQYTESEDCCWGVMACRAAARRGHLDV 485
            NPL D   +LRHL+ FA+R G+LFVAGV ++WR AWG +RP ++++  AVQS S L WAR +   W    C R  A G      +Y  +  C W    C  A  +  + V
Sbjct:  726 NPLADPT-ILRHLISFAARNGFLFVAGVSRSWRDAWGVERPPETEVDAAVQSPSRLGWARASGLGWGPSVCARA-ASGGHLATLRYARALGCPWDWTCCALATTKALVPV 833
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19251.4856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXW1_9PHAE1.450e-1240.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19251contigH-paniculata_contig19251:1042..3546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue2.9e-13
Seed eggNOG ortholog2880.D7FMP0
Hectar predicted targeting categoryother localisation
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1649
Cds size1464
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19251.4856.1prot_H-paniculata_contig19251.4856.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19251 1180..3499 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929469.764852-UTR-H-paniculata_contig19251:1041..11791622929469.764852-UTR-H-paniculata_contig19251:1041..1179Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19251 1042..1179 -
1691480875.2909102-UTR-H-paniculata_contig19251:1041..11791691480875.2909102-UTR-H-paniculata_contig19251:1041..1179Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19251 1042..1179 -
1622929469.8216753-UTR-H-paniculata_contig19251:3499..35461622929469.8216753-UTR-H-paniculata_contig19251:3499..3546Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19251 3500..3546 -
1691480875.3229244-UTR-H-paniculata_contig19251:3499..35461691480875.3229244-UTR-H-paniculata_contig19251:3499..3546Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19251 3500..3546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929469.7798097-CDS-H-paniculata_contig19251:1179..12561622929469.7798097-CDS-H-paniculata_contig19251:1179..1256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19251 1180..1256 -
1691480875.302903-CDS-H-paniculata_contig19251:1179..12561691480875.302903-CDS-H-paniculata_contig19251:1179..1256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19251 1180..1256 -
1622929469.807731-CDS-H-paniculata_contig19251:2112..34991622929469.807731-CDS-H-paniculata_contig19251:2112..3499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19251 2113..3499 -
1691480875.3110454-CDS-H-paniculata_contig19251:2112..34991691480875.3110454-CDS-H-paniculata_contig19251:2112..3499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19251 2113..3499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19251.4856.1

>prot_H-paniculata_contig19251.4856.1 ID=prot_H-paniculata_contig19251.4856.1|Name=mRNA_H-paniculata_contig19251.4856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=488bp
MMPNQALDIKCGSCAVKAPHTVRSSGRSGRRSVPPLRNPLRDHADVLRHL
MPFASREGYLFVAGVCKNWRMAWGDRPKKSDISVAVQSVSCLAWARDNDG
CWNREKCKRTQAFGCRHKPPQYTESEDCCWGVMACRAAARRGHLDVLKRC
KAYGCHSDPETCYEAASGGHLKILKWCIANDYPWSSYTCLAAAGRGDLRM
MKWCKANGCRLNGGECSKAAGGGHLEILKWCRANGCPWDGGTCDSAARGG
HLELLKWCRANGCPWDGEECSIAAVGGHLEVLKWCRANGCPWDKKTCSKA
AGRGHLEVLKWSRANGCPWDGETCSKAAGGGHLELLKWSRANSCPWDKKT
CEEATLWGKLEVLKWCRANGCPWDGNTCRVAAVAGHLDVLKWCRANGCPW
DEQTCEEAAFRGRLELLKWCRAQACPWDSSTLRWAMENGHTETEEWCRAN
GCPDPEDGLKMQAHSDRIVWLYKFYKTLRHRQIEHVY*
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mRNA from alignment at H-paniculata_contig19251:1042..3546-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19251.4856.1 ID=mRNA_H-paniculata_contig19251.4856.1|Name=mRNA_H-paniculata_contig19251.4856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2505bp|location=Sequence derived from alignment at H-paniculata_contig19251:1042..3546- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACCCGACAATTCTGTATTCTCTCGTCATCCTGAATTCCTAGACATG
ATGCCGAACCAAGCCCTTGATATAAAGTGCGGTTCGTGTGCCGTAAAAGC
CCCTCATACTGTCAGATCTTCCGGTAGAAGTGGCAGAAGAAGTGTCCCCC
CCCTGCGTAATCCTCTCAGAGATCATGCGGACGTGCTGCGGCACTTGATG
CCCTTTGCAAGTCGGGAGGGCTACCTGTTCGTGGCTGGGGTATGCAAGAA
CTGGAGAATGGCCTGGGGCGATCGGCCTAAGAAGAGTGATATAAGTGTGG
CGGTACAATCGGTCTCTTGTTTAGCATGGGCGAGGGACAATGACGGTTGC
TGGAACAGGGAAAAATGCAAACGAACGCAAGCATTTGGCTGCCGACACAA
GCCCCCCCAATATACTGAGAGCGAAGATTGTTGTTGGGGCGTCATGGCTT
GCCGTGCAGCCGCTAGAAGGGGGCATCTGGACGTGTTGAAGCGGTGTAAG
GCTTACGGCTGCCACTCGGATCCTGAGACTTGTTATGAAGCCGCTAGTGG
GGGACACTTGAAGATTTTGAAATGGTGCATAGCTAATGACTATCCCTGGA
GTAGCTACACGTGCTTGGCAGCTGCTGGACGCGGGGATCTGCGTATGATG
AAGTGGTGCAAAGCGAACGGTTGTCGCTTGAATGGGGGGGAGTGCTCAAA
GGCTGCTGGAGGCGGGCATCTGGAGATATTGAAGTGGTGCAGAGCTAACG
GTTGTCCCTGGGATGGGGGAACGTGCGATAGCGCCGCCAGAGGGGGACAT
CTGGAGTTGTTGAAGTGGTGCAGAGCTAACGGCTGTCCCTGGGATGGGGA
AGAGTGCTCAATAGCTGCTGTTGGGGGCCATCTGGAGGTGTTGAAGTGGT
GCAGAGCCAACGGCTGTCCCTGGGATAAGAAGACGTGCTCAAAAGCTGCC
GGTAGGGGCCATCTAGAGGTGTTGAAGTGGAGCAGAGCTAATGGCTGTCC
CTGGGATGGAGAGACGTGCTCGAAAGCTGCTGGAGGGGGGCATCTGGAGT
TGTTGAAGTGGTCCAGAGCCAACAGTTGTCCATGGGATAAGAAAACGTGC
GAGGAAGCTACTTTGTGGGGAAAACTGGAGGTGCTGAAGTGGTGCAGAGC
TAATGGCTGTCCCTGGGATGGGAACACATGCCGGGTAGCTGCTGTTGCTG
GACATCTAGACGTGTTGAAGTGGTGCAGAGCTAATGGCTGTCCCTGGGAT
GAGCAGACGTGCGAGGAAGCTGCTTTTCGGGGGCGTCTGGAGTTGCTGAA
GTGGTGCAGAGCGCAAGCCTGTCCCTGGGATAGCAGCACGTTGAGGTGGG
CGATGGAAAATGGCCATACGGAAACGGAGGAGTGGTGCAGAGCGAACGGC
TGCCCTGATCCAGAGGATGGACTGAAAATGCAGGGTAAGTAGTAGGAGTG
CGTGCATTGCCTCATCGCTTTGGAGTATCGCAATTTTGGGTGTAGGTTAA
AGATAGTGTTATGCTGTACTCTAGCATAGCCAGGTGTAGCGGTCGTTCTA
AACGAGGCCGCTTTTTGTCCGTTTTTTCTCGCTTGCGTTGTTTTCCGAAA
GGGTGAAATCGCGAAAGCGAGCTCAGAATTGAGGAAAAATATGCGGAAAC
ACGGCACCCCTCGGACAAATACGAACAGTTGGCGTATTCGCCATGAAAAT
TAGGAAGTAATGTTGCCTGAGTTTCAGAATGAGCGGGCGCATAGAATAAA
GTACCCACCCGTGTCCACCGATCTGCGAGTATTATTAGAAGTCATGGATA
GTCCGGGGCACATAGAATACACGAGAGATCATTCTGAAACTCAGACGAAT
ATTACTTAATTTTCGTGGCGAATAGGCCAATTATTTATCTGGGGGGTGTG
GAACACTGTACAGCATGTTGCCCTCATACGTAAAGTATACTCCGGTCACA
ATCGTGAACCTGTTCAGCTCGCTATCGCGATTTCTATCGCACAAAATATA
GTGTCGTTTACAACATGCCTAAACTGCCTGAAGCTGGTCCAGATTTCCGT
TGATTTTCGTCTCCTTGTACCAACCGTGCTTCGCACGATCTCGTTTTCTT
CCACATAACATGGGTTGGTAGTCACACAGCGCAAGGTCGCAAAGACGGAG
TAAATGTACAGTACTGTTACAGATACCCCCATCAACACGCCCCCGCCCGG
ATGTACCTTTGTATCTCCAACTAATACCCACCGCCCTCCCACATCCATCG
CCCCCTTTGTTTTCCCGCCTCGAGTCTCTCGACCATTTAGCACACAGCGA
TCGCATAGTTTGGTTATATAAGTTCTACAAGACTTTGAGGCATCGCCAGA
TTGAACACGTGTATTGATTCCCGGCGGGCACCAAAGCCCCGGAGTACGCG
GACTACTGCTACCTTCGGGGACGACGTTTCTTGGTTTCATGGAGGGCTGG
GGCATTAGAAAAGGGAGTCCTCTGGCAGCTGGTTGCTAACATGGCTGCAT
GGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig19251:1042..3546-

>mRNA_H-paniculata_contig19251.4856.1 ID=mRNA_H-paniculata_contig19251.4856.1|Name=mRNA_H-paniculata_contig19251.4856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2928bp|location=Sequence derived from alignment at H-paniculata_contig19251:1042..3546- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCCGAACCAAGCCCTTGATATAAAGTGCGGTTCGTGTGCCGTAAA
AGCCCCTCATACTGTCAGATCTTCCGGTAGAAGTGGCAGAAGAAGTGTCC
CCCCCCTGCGTAATCCTCTCAGAGATCATGCGGACGTGCTGCGGCACTTG
ATGCCCTTTGCAAGTCGGGAGGGCTACCTGTTCGTGGCTGGGGTATGCAA
GAACTGGAGAATGGCCTGGGGCGATCGGCCTAAGAAGAGTGATATAAGTG
TGGCGGTACAATCGGTCTCTTGTTTAGCATGGGCGAGGGACAATGACGGT
TGCTGGAACAGGGAAAAATGCAAACGAACGCAAGCATTTGGCTGCCGACA
CAAGCCCCCCCAATATACTGAGAGCGAAGATTGTTGTTGGGGCGTCATGG
CTTGCCGTGCAGCCGCTAGAAGGGGGCATCTGGACGTGTTGAAGCGGTGT
AAGGCTTACGGCTGCCACTCGGATCCTGAGACTTGTTATGAAGCCGCTAG
TGGGGGACACTTGAAGATTTTGAAATGGTGCATAGCTAATGACTATCCCT
GGAGTAGCTACACGTGCTTGGCAGCTGCTGGACGCGGGGATCTGCGTATG
ATGAAGTGGTGCAAAGCGAACGGTTGTCGCTTGAATGGGGGGGAGTGCTC
AAAGGCTGCTGGAGGCGGGCATCTGGAGATATTGAAGTGGTGCAGAGCTA
ACGGTTGTCCCTGGGATGGGGGAACGTGCGATAGCGCCGCCAGAGGGGGA
CATCTGGAGTTGTTGAAGTGGTGCAGAGCTAACGGCTGTCCCTGGGATGG
GGAAGAGTGCTCAATAGCTGCTGTTGGGGGCCATCTGGAGGTGTTGAAGT
GGTGCAGAGCCAACGGCTGTCCCTGGGATAAGAAGACGTGCTCAAAAGCT
GCCGGTAGGGGCCATCTAGAGGTGTTGAAGTGGAGCAGAGCTAATGGCTG
TCCCTGGGATGGAGAGACGTGCTCGAAAGCTGCTGGAGGGGGGCATCTGG
AGTTGTTGAAGTGGTCCAGAGCCAACAGTTGTCCATGGGATAAGAAAACG
TGCGAGGAAGCTACTTTGTGGGGAAAACTGGAGGTGCTGAAGTGGTGCAG
AGCTAATGGCTGTCCCTGGGATGGGAACACATGCCGGGTAGCTGCTGTTG
CTGGACATCTAGACGTGTTGAAGTGGTGCAGAGCTAATGGCTGTCCCTGG
GATGAGCAGACGTGCGAGGAAGCTGCTTTTCGGGGGCGTCTGGAGTTGCT
GAAGTGGTGCAGAGCGCAAGCCTGTCCCTGGGATAGCAGCACGTTGAGGT
GGGCGATGGAAAATGGCCATACGGAAACGGAGGAGTGGTGCAGAGCGAAC
GGCTGCCCTGATCCAGAGGATGGACTGAAAATGCAGGATGATGCCGAACC
AAGCCCTTGATATAAAGTGCGGTTCGTGTGCCGTAAAAGCCCCTCATACT
GTCAGATCTTCCGGTAGAAGTGGCAGAAGAAGTGTCCCCCCCCTGCGTAA
TCCTCTCAGAGATCATGCGGACGTGCTGCGGCACTTGATGCCCTTTGCAA
GTCGGGAGGGCTACCTGTTCGTGGCTGGGGTATGCAAGAACTGGAGAATG
GCCTGGGGCGATCGGCCTAAGAAGAGTGATATAAGTGTGGCGGTACAATC
GGTCTCTTGTTTAGCATGGGCGAGGGACAATGACGGTTGCTGGAACAGGG
AAAAATGCAAACGAACGCAAGCATTTGGCTGCCGACACAAGCCCCCCCAA
TATACTGAGAGCGAAGATTGTTGTTGGGGCGTCATGGCTTGCCGTGCAGC
CGCTAGAAGGGGGCATCTGGACGTGTTGAAGCGGTGTAAGGCTTACGGCT
GCCACTCGGATCCTGAGACTTGTTATGAAGCCGCTAGTGGGGGACACTTG
AAGATTTTGAAATGGTGCATAGCTAATGACTATCCCTGGAGTAGCTACAC
GTGCTTGGCAGCTGCTGGACGCGGGGATCTGCGTATGATGAAGTGGTGCA
AAGCGAACGGTTGTCGCTTGAATGGGGGGGAGTGCTCAAAGGCTGCTGGA
GGCGGGCATCTGGAGATATTGAAGTGGTGCAGAGCTAACGGTTGTCCCTG
GGATGGGGGAACGTGCGATAGCGCCGCCAGAGGGGGACATCTGGAGTTGT
TGAAGTGGTGCAGAGCTAACGGCTGTCCCTGGGATGGGGAAGAGTGCTCA
ATAGCTGCTGTTGGGGGCCATCTGGAGGTGTTGAAGTGGTGCAGAGCCAA
CGGCTGTCCCTGGGATAAGAAGACGTGCTCAAAAGCTGCCGGTAGGGGCC
ATCTAGAGGTGTTGAAGTGGAGCAGAGCTAATGGCTGTCCCTGGGATGGA
GAGACGTGCTCGAAAGCTGCTGGAGGGGGGCATCTGGAGTTGTTGAAGTG
GTCCAGAGCCAACAGTTGTCCATGGGATAAGAAAACGTGCGAGGAAGCTA
CTTTGTGGGGAAAACTGGAGGTGCTGAAGTGGTGCAGAGCTAATGGCTGT
CCCTGGGATGGGAACACATGCCGGGTAGCTGCTGTTGCTGGACATCTAGA
CGTGTTGAAGTGGTGCAGAGCTAATGGCTGTCCCTGGGATGAGCAGACGT
GCGAGGAAGCTGCTTTTCGGGGGCGTCTGGAGTTGCTGAAGTGGTGCAGA
GCGCAAGCCTGTCCCTGGGATAGCAGCACGTTGAGGTGGGCGATGGAAAA
TGGCCATACGGAAACGGAGGAGTGGTGCAGAGCGAACGGCTGCCCTGATC
CAGAGGATGGACTGAAAATGCAGGCACACAGCGATCGCATAGTTTGGTTA
TATAAGTTCTACAAGACTTTGAGGCATCGCCAGATTGAACACGTGTATTG
ACACACAGCGATCGCATAGTTTGGTTATATAAGTTCTACAAGACTTTGAG
GCATCGCCAGATTGAACACGTGTATTGA
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