mRNA_H-paniculata_contig1925.4854.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1925.4854.1
Unique NamemRNA_H-paniculata_contig1925.4854.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1925.4854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1925contigH-paniculata_contig1925:13345..13710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929469.5657604-CDS-H-paniculata_contig1925:13344..136531622929469.5657604-CDS-H-paniculata_contig1925:13344..13653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1925 13345..13653 +
1691480875.1945877-CDS-H-paniculata_contig1925:13344..136531691480875.1945877-CDS-H-paniculata_contig1925:13344..13653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1925 13345..13653 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929469.578638-UTR-H-paniculata_contig1925:13653..137101622929469.578638-UTR-H-paniculata_contig1925:13653..13710Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1925 13654..13710 +
1691480875.209336-UTR-H-paniculata_contig1925:13653..137101691480875.209336-UTR-H-paniculata_contig1925:13653..13710Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1925 13654..13710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1925.4854.1prot_H-paniculata_contig1925.4854.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1925 13345..13653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1925.4854.1

>prot_H-paniculata_contig1925.4854.1 ID=prot_H-paniculata_contig1925.4854.1|Name=mRNA_H-paniculata_contig1925.4854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
RANSTRRVLASLSQSEVRKRVTDGTVTRPSRGGGTHPSPKRREGPQYTPE
CLSRRTDPNLSQIGLQYYLVYFVKHESSTWIITWCEPKRCSSCQRPELST
RA*
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mRNA from alignment at H-paniculata_contig1925:13345..13710+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1925.4854.1 ID=mRNA_H-paniculata_contig1925.4854.1|Name=mRNA_H-paniculata_contig1925.4854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig1925:13345..13710+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGCAAACTCAACACGGAGAGTGCTAGCATCATTATCGCAGTCAGAAGT
AAGGAAAAGGGTCACAGATGGTACTGTTACGAGGCCATCTCGGGGCGGAG
GCACACATCCTTCCCCAAAAAGGAGAGAGGGGCCTCAATACACCCCGGAA
TGTCTCAGCAGGCGCACCGACCCCAACCTGTCGCAAATAGGACTGCAGTA
TTATCTGGTATACTTCGTCAAGCATGAATCCAGTACGTGGATTATTACAT
GGTGCGAACCGAAGCGCTGCTCTAGCTGCCAACGGCCGGAACTCTCAACA
CGGGCTTGACATACCCACGATGTTAGAGGGCGCTCGATCAAGACATGACC
ATATTCTAGCTTATTT
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Coding sequence (CDS) from alignment at H-paniculata_contig1925:13345..13710+

>mRNA_H-paniculata_contig1925.4854.1 ID=mRNA_H-paniculata_contig1925.4854.1|Name=mRNA_H-paniculata_contig1925.4854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig1925:13345..13710+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGCAAACTCAACACGGAGAGTGCTAGCATCATTATCGCAGTCAGAAGT
AAGGAAAAGGGTCACAGATGGTACTGTTACGAGGCCATCTCGGGGCGGAG
GCACACATCCTTCCCCAAAAAGGAGAGAGGGGCCTCAATACACCCCGGAA
TGTCTCAGCAGGCGCACCGACCCCAACCTGTCGCAAATAGGACTGCAGTA
TTATCTGGTATACTTCGTCAAGCATGAATCCAGTACGTGGATTATTACAT
GGTGCGAACCGAAGCGCTGCTCTAGCTGCCAACGGCCGGAACTCTCAACA
CGGGCTTGACGGGCAAACTCAACACGGAGAGTGCTAGCATCATTATCGCA
GTCAGAAGTAAGGAAAAGGGTCACAGATGGTACTGTTACGAGGCCATCTC
GGGGCGGAGGCACACATCCTTCCCCAAAAAGGAGAGAGGGGCCTCAATAC
ACCCCGGAATGTCTCAGCAGGCGCACCGACCCCAACCTGTCGCAAATAGG
ACTGCAGTATTATCTGGTATACTTCGTCAAGCATGAATCCAGTACGTGGA
TTATTACATGGTGCGAACCGAAGCGCTGCTCTAGCTGCCAACGGCCGGAA
CTCTCAACACGGGCTTGA
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