mRNA_H-paniculata_contig19245.4852.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19245.4852.1
Unique NamemRNA_H-paniculata_contig19245.4852.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19245.4852.1 vs. uniprot
Match: D7FRC6_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC6_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 6.710e-93
Identity = 137/153 (89.54%), Postives = 146/153 (95.42%), Query Frame = 1
Query:    4 VHKITPSCSVFETTLRSFSFEVVVSGRVLHLQGSSVEDSLRWIATLKAAINNSPPDDTDPLLTAALELEDAFYYADFETKQPLGVVLERSKEWAIVKLANPQLSEVSVGSALASVNGESVVLRAYEETINMLTGWKPPLNLIFRRAPVKEGWL 462
            VHKI+PSCSVFET L++FSFEVVV+G VLHLQGSS EDSLRWIATLKAAINNSPPD+TDPLL+ AL LED FYYADFETKQPLGVVLERSKEWAIVKLANP+LS+VSVGSALASVNGESVVL+AYEETI MLTGWKPPLNLIFRRAPVKEGWL
Sbjct:    2 VHKISPSCSVFETNLKAFSFEVVVAGLVLHLQGSSFEDSLRWIATLKAAINNSPPDETDPLLSEALRLEDTFYYADFETKQPLGVVLERSKEWAIVKLANPELSQVSVGSALASVNGESVVLKAYEETIAMLTGWKPPLNLIFRRAPVKEGWL 154          
BLAST of mRNA_H-paniculata_contig19245.4852.1 vs. uniprot
Match: A0A6H5L6G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6G5_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 3.990e-84
Identity = 137/154 (88.96%), Postives = 147/154 (95.45%), Query Frame = 1
Query:    1 QVHKITPSCSVFETTLRSFSFEVVVSGRVLHLQGSSVEDSLRWIATLKAAINNSPPDDTDPLLTAALELEDAFYYADFETKQPLGVVLERSKEWAIVKLANPQLSEVSVGSALASVNGESVVLRAYEETINMLTGWKPPLNLIFRRAPVKEGWL 462
            QVHKI+PSCSVFET L++FSFE+VV+G VLHLQGSS EDSLRWIATLKAAINNSPPD+TDPLL+ AL LED FYYADFETKQPLGVVLERSKEWAIVKLANP+LS+VSVGSALASVNGESVVL+AYEETI MLTGWKPPLNLIFRRAPVKEGWL
Sbjct:  269 QVHKISPSCSVFETNLKAFSFELVVAGLVLHLQGSSFEDSLRWIATLKAAINNSPPDETDPLLSEALRLEDTFYYADFETKQPLGVVLERSKEWAIVKLANPELSQVSVGSALASVNGESVVLKAYEETIAMLTGWKPPLNLIFRRAPVKEGWL 422          
BLAST of mRNA_H-paniculata_contig19245.4852.1 vs. uniprot
Match: A0A7S1U0Z2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0Z2_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.950e-45
Identity = 82/148 (55.41%), Postives = 108/148 (72.97%), Query Frame = 1
Query:   19 PSCSVFETTLRSFSFEVVVSGRVLHLQGSSVEDSLRWIATLKAAINNSPPDDTDPLLTAALELEDAFYYADFETKQPLGVVLERSKEWAIVKLANPQLSEVSVGSALASVNGESVVLRAYEETINMLTGWKPPLNLIFRRAPVKEGWL 462
            PS +VFET L+ F+FE+V S +V+HLQGS+  D+  W+  L+AAI +S P + DPLL  AL  +D FY   FE K+PLG+VLERS EWA+VK+A+ + + V +GSAL S+NGE V L+ Y + I  LTGW+PPLNL FR AP K+GWL
Sbjct:  294 PSGAVFETNLKPFAFELVTSKKVVHLQGSAQGDTSAWMKELRAAILSSVPQERDPLLEEALLRQDTFYTITFEEKRPLGLVLERSGEWAMVKMADTRQTGVRIGSALHSINGERVSLKPYMDVIRKLTGWQPPLNLTFRAAPEKKGWL 441          
BLAST of mRNA_H-paniculata_contig19245.4852.1 vs. uniprot
Match: A0A835ZB29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB29_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.070e-44
Identity = 83/135 (61.48%), Postives = 97/135 (71.85%), Query Frame = 1
Query:   58 SFEVVVSGRVLHLQGSSVEDSLRWIATLKAAINNSPPDDTDPLLTAALELEDAFYYADFETKQPLGVVLERSKEWAIVKLANPQLSEVSVGSALASVNGESVVLRAYEETINMLTGWKPPLNLIFRRAPVKEGWL 462
            SFE+V + +VLH+QGS   +++ WI  LK AI  +   D DPL   A  LED  Y   F+TKQPLGVVLERSKEWAIVKLANPQLS +SVGSALA VNG  V L+ Y+  I +LTGWKPPL L+ RRAP K GWL
Sbjct:  394 SFELVTTSQVLHVQGSCRTNAVAWIDALKTAIAGAVHGDEDPLQVEASTLEDEMYTVTFDTKQPLGVVLERSKEWAIVKLANPQLSAISVGSALAEVNGAVVALQPYQTAITLLTGWKPPLQLVLRRAPHKSGWL 528          
BLAST of mRNA_H-paniculata_contig19245.4852.1 vs. uniprot
Match: A0A812T4T8_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812T4T8_SYMMI)

HSP 1 Score: 142 bits (357), Expect = 3.200e-38
Identity = 70/153 (45.75%), Postives = 102/153 (66.67%), Query Frame = 1
Query:   10 KITPSCSVFETTLRSFSFEVVVSGRVLHLQGSSVEDSLRWIATLKAAINNSPPDDTDPLLTAALEL--EDAFYYADFETKQPLGVVLERSKEWAIVKLANPQLSEVSVGSALASVNGESVVLRAYEETINMLTGWKPPLNLIFRRAPVKEGWL 462
            ++ PSCSVFET L   +FE+V   +V+H+   S ++   W+  L +AI+ S P+  DPL++ AL+   ED FY   F  K+PLGVV E+S EWAI+K +N + + V +GS L S+NG+S +L  Y  + ++L GW+PPL+L FRRAP K G+L
Sbjct:   73 ELRPSCSVFETNLSDHAFEIVTPKQVVHVLAVSRKECTDWMHALLSAISKSHPEANDPLVSLALQKIDEDVFYDVSFHEKRPLGVVFEKSSEWAIIKHSNSRATGVHIGSVLTSINGQSCMLSTYTRSKSLLRGWQPPLHLGFRRAPHKAGYL 225          
BLAST of mRNA_H-paniculata_contig19245.4852.1 vs. uniprot
Match: A0A6S8D2S0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8D2S0_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.920e-37
Identity = 77/162 (47.53%), Postives = 100/162 (61.73%), Query Frame = 1
Query:    4 VHKITPSCSVFETTLRSFSFEVVVSGRVLHLQGSSVEDSLRWIATLKAAINNSPPDDTDPLLTAALELEDAFYYADFETKQPLGVVLERSKEWAIVKLANPQLSE---------VSVGSALASVNGESVVLRAYEETINMLTGWKPPLNLIFRRAPVKEGWL 462
            V  ++P+C+VFETTLR +SFE+V    VLH+ G S ++  RW   L+ AI  S    +DPL+ AA  +    Y   F+ KQPLG+VLERS EWA+VK   P  S+          S GSAL SVNG+S +L++Y + I  LTGW+PPL L F RAP   GWL
Sbjct:  318 VFLMSPTCAVFETTLRPYSFELVTPQGVLHVHGQSSQERDRWTTELRTAIRRSSRLVSDPLVDAAKNIPLDLYELRFQKKQPLGIVLERSAEWALVKSCRPVPSDDSEEQIAAAASTGSALVSVNGQSCLLKSYADVIKSLTGWQPPLTLTFTRAPQISGWL 479          
BLAST of mRNA_H-paniculata_contig19245.4852.1 vs. uniprot
Match: B8BQ69_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQ69_THAPS)

HSP 1 Score: 106 bits (264), Expect = 9.920e-24
Identity = 58/155 (37.42%), Postives = 87/155 (56.13%), Query Frame = 1
Query:    1 QVHKITPSCSVFETTLRSFSFEVVVSGRVLHLQGSSVEDSLRWIATLKAAINNSPPDDTDPLLTAALELEDAFYYADFETKQPLGVVLERSKEWAIVKLANPQLS-EVSVGSALASVNGESVVLRAYEETINMLTGWKPPLNLIFRRAPVKEGWL 462
            Q H +TP+   F TTL+ +SFE+V+  + LHL  SS ++   +I  L+  I  S  D  DPL +A+LE     Y  +F+++   G+ LER   WA+  L +  +S ++S GS L SV G   +L  +E  +  L+ WK PL L F  +P + GWL
Sbjct:  265 QRHVLTPNAMTFFTTLKDYSFELVLFSKSLHLSASSEKERSEFIFVLQKLIPKSSYDINDPLQSASLERSIEPYDIEFQSENAPGIFLERRGNWALASLVSDSISRKISQGSMLVSVQGVPAILSGFESVVKKLSLWKAPLKLSFWLSPRRMGWL 419          
BLAST of mRNA_H-paniculata_contig19245.4852.1 vs. uniprot
Match: A0A7S2WUU5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUU5_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.040e-19
Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  205 LEDAFYYADFETKQPLGVVLERSKEWAIVKLANPQLSEVSVGSALASVNGESVVLRAYEETINMLTGWKPPLNLIFRRAPVKEGWL 462
            L+   Y   F  K+PLG+VLERS EWA+VKL+N   + V+ GS L  +N E V L  Y +TI  LT WKPPL L FRR+P K+GWL
Sbjct:    4 LDQDLYTVSFTRKKPLGLVLERSSEWAVVKLSNESETRVTQGSVLYFINDEPVTLLPYPDTIARLTKWKPPLVLGFRRSPSKQGWL 89          
BLAST of mRNA_H-paniculata_contig19245.4852.1 vs. uniprot
Match: A0A7S2DGQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGQ6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.930e-19
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  250 LGVVLERSKEWAIVKLANPQLSEVSVGSALASVNGESVVLRAYEETINMLTGWKPPLNLIFRRAPVKEGWL 462
            LG+VLERS EWA+VK      +E+S GSAL  +N E ++L+ Y++TI++LTGW+PPL + F RAPVK G+L
Sbjct:    1 LGIVLERSSEWALVKFNTANNNEISEGSALCKINDEDLMLQPYKKTISLLTGWQPPLKMSFIRAPVKHGYL 71          
BLAST of mRNA_H-paniculata_contig19245.4852.1 vs. uniprot
Match: A0A7S2GKQ5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GKQ5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.470e-17
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  250 LGVVLERSKEWAIVKLANPQLSEVSVGSALASVNGESVVLRAYEETINMLTGWKPPLNLIFRRAPVKEGWL 462
            LG+VLERS EWA+VK      +E+S GSAL  +N E ++L+ Y++TI++LTGW+PPL + F RAPVK G+L
Sbjct:    1 LGIVLERSSEWALVKFNTANNNEISEGSALCKINDEDLMLQPYKKTISLLTGWQPPLKMSFIRAPVKHGYL 71          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19245.4852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FRC6_ECTSI6.710e-9389.54PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5L6G5_9PHAE3.990e-8488.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1U0Z2_9STRA2.950e-4555.41Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835ZB29_9STRA1.070e-4461.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812T4T8_SYMMI3.200e-3845.75Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A6S8D2S0_9STRA1.920e-3747.53Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
B8BQ69_THAPS9.920e-2437.42Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2WUU5_9STRA1.040e-1953.49Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S2DGQ6_9STRA3.930e-1954.93Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2GKQ5_9STRA1.470e-1754.93Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19245contigH-paniculata_contig19245:3428..4626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog44056.XP_009038658.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EF-hand, calcium binding motif
EggNOG OGs2CZJK@1,2SAP1@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size462
Cds size462
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19245.4852.1prot_H-paniculata_contig19245.4852.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19245 3428..4626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929469.4922593-CDS-H-paniculata_contig19245:3427..36521622929469.4922593-CDS-H-paniculata_contig19245:3427..3652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19245 3428..3652 +
1691480875.153208-CDS-H-paniculata_contig19245:3427..36521691480875.153208-CDS-H-paniculata_contig19245:3427..3652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19245 3428..3652 +
1622929469.5097494-CDS-H-paniculata_contig19245:4075..42021622929469.5097494-CDS-H-paniculata_contig19245:4075..4202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19245 4076..4202 +
1691480875.1651573-CDS-H-paniculata_contig19245:4075..42021691480875.1651573-CDS-H-paniculata_contig19245:4075..4202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19245 4076..4202 +
1622929469.5256355-CDS-H-paniculata_contig19245:4516..46261622929469.5256355-CDS-H-paniculata_contig19245:4516..4626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19245 4517..4626 +
1691480875.179276-CDS-H-paniculata_contig19245:4516..46261691480875.179276-CDS-H-paniculata_contig19245:4516..4626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19245 4517..4626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19245.4852.1

>prot_H-paniculata_contig19245.4852.1 ID=prot_H-paniculata_contig19245.4852.1|Name=mRNA_H-paniculata_contig19245.4852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
QVHKITPSCSVFETTLRSFSFEVVVSGRVLHLQGSSVEDSLRWIATLKAA
INNSPPDDTDPLLTAALELEDAFYYADFETKQPLGVVLERSKEWAIVKLA
NPQLSEVSVGSALASVNGESVVLRAYEETINMLTGWKPPLNLIFRRAPVK
EGWL
back to top

mRNA from alignment at H-paniculata_contig19245:3428..4626+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19245.4852.1 ID=mRNA_H-paniculata_contig19245.4852.1|Name=mRNA_H-paniculata_contig19245.4852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1199bp|location=Sequence derived from alignment at H-paniculata_contig19245:3428..4626+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTCACAAGATTACCCCTAGCTGCTCGGTGTTCGAGACCACCCTCCG CTCGTTCTCGTTCGAGGTGGTCGTTAGCGGTCGAGTGCTCCACTTGCAGG GATCCAGTGTCGAAGACAGCCTCCGATGGATCGCCACTTTGAAGGCGGCC ATCAACAACAGCCCTCCCGACGACACCGACCCGCTGCTGACCGCGGCCCT CGAGCTTGAGGACGCTTTTTACTACGTAAGTGGTGATTTTTCGGCAAACC TAATGCCTAGAACAGTCGGGATTTAGACCTAAAGAAGGGACGATTGTCCG TTCTACTGGTGGTAGAGTAACGTCTTCACCGGTAAAAAGTCCCCCCCTTC TTTTTTTTTTCTTTTTTTTTTTTAGTTTTCAACCCACGCACTGGGGCTCG CTCGCTAAGCTCACAATAATTGTAGGTTAATATGTCCGTCAAGATTCCAT GTTTCCGAAGTATCTCGAGTACGGAGTTTTAAAAGGATTATGTATTCAGG AACGGCAAAAAAAAACTCACACTAATCGGATACATGATTTTTTATTTCAG TTGGTATTTCGTCATTCCTGTTGGCCTCCTTTCGACTTTTTATTTTTTAT TTTTTTATGTACTGCACACATGACTGTGATATGGCTTGCACCTAACAGGC TGACTTCGAGACGAAGCAGCCCTTGGGTGTTGTTCTGGAGCGGTCCAAGG AATGGGCCATCGTTAAGCTCGCCAACCCACAACTCAGCGAAGTGTCGGTT GGCTCTGCCCTGGCCTCTGTCAACGGTGGGTGTTGTGTTTGGTTGTATCG TTGTGATATACATGCACTACGCGCAGTAGGTAGGGGCGGGCGTCTATCGT AGCCACCGCCGCTAAACTTGCTGAGTTGTCAAGTTTTGGAGATAATCATA TTCTCGCTGTTACTGATTGTTTTGGCAAGAATTGAGCCCGATATCTTCCG CGAAAATTCTCTTAATTTTCGGAAAAAAATGAGTCTCGATCTCTTAACGG GGTCTGATTGTTATCACCCCCCCCCCCCCCTGTAAATACGTAACCAAACT TTCATTTTGAACTCGAACAAAATGTTGCGCTGTATGCAGGCGAGTCGGTG GTACTTCGAGCTTATGAGGAGACGATCAACATGCTCACCGGGTGGAAGCC GCCGCTGAATCTGATCTTCCGCCGCGCTCCTGTGAAGGAAGGTTGGCTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig19245:3428..4626+

>mRNA_H-paniculata_contig19245.4852.1 ID=mRNA_H-paniculata_contig19245.4852.1|Name=mRNA_H-paniculata_contig19245.4852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig19245:3428..4626+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTCACAAGATTACCCCTAGCTGCTCGGTGTTCGAGACCACCCTCCG
CTCGTTCTCGTTCGAGGTGGTCGTTAGCGGTCGAGTGCTCCACTTGCAGG
GATCCAGTGTCGAAGACAGCCTCCGATGGATCGCCACTTTGAAGGCGGCC
ATCAACAACAGCCCTCCCGACGACACCGACCCGCTGCTGACCGCGGCCCT
CGAGCTTGAGGACGCTTTTTACTACCAGGTTCACAAGATTACCCCTAGCT
GCTCGGTGTTCGAGACCACCCTCCGCTCGTTCTCGTTCGAGGTGGTCGTT
AGCGGTCGAGTGCTCCACTTGCAGGGATCCAGTGTCGAAGACAGCCTCCG
ATGGATCGCCACTTTGAAGGCGGCCATCAACAACAGCCCTCCCGACGACA
CCGACCCGCTGCTGACCGCGGCCCTCGAGCTTGAGGACGCTTTTTACTAC
GCTGACTTCGAGACGAAGCAGCCCTTGGGTGTTGTTCTGGAGCGGTCCAA
GGAATGGGCCATCGTTAAGCTCGCCAACCCACAACTCAGCGAAGTGTCGG
TTGGCTCTGCCCTGGCCTCTGTCAACGGCTGACTTCGAGACGAAGCAGCC
CTTGGGTGTTGTTCTGGAGCGGTCCAAGGAATGGGCCATCGTTAAGCTCG
CCAACCCACAACTCAGCGAAGTGTCGGTTGGCTCTGCCCTGGCCTCTGTC
AACGGCGAGTCGGTGGTACTTCGAGCTTATGAGGAGACGATCAACATGCT
CACCGGGTGGAAGCCGCCGCTGAATCTGATCTTCCGCCGCGCTCCTGTGA
AGGAAGGTTGGCTCGCGAGTCGGTGGTACTTCGAGCTTATGAGGAGACGA
TCAACATGCTCACCGGGTGGAAGCCGCCGCTGAATCTGATCTTCCGCCGC
GCTCCTGTGAAGGAAGGTTGGCTC
back to top