mRNA_H-paniculata_contig19232.4846.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19232.4846.1
Unique NamemRNA_H-paniculata_contig19232.4846.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19232.4846.1 vs. uniprot
Match: D8LRE4_ECTSI (Centrosomal protein of 162 kDa n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE4_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 9.090e-22
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:   40 MNTQVDEMERRTARREAELRRVLEESRQQSKIELQRLKSLHAEELSAKDALVHGFRAELDALLSAAGQFMASS 258
            ++ +V+EMERRTARREAEL+RVL ESRQQSK+EL RL+++HA+E+ AKDALVHGFRAELD LL AAG FM  S
Sbjct:  401 LSKKVEEMERRTARREAELQRVLSESRQQSKLELSRLRAIHADEMRAKDALVHGFRAELDGLLRAAGSFMGGS 473
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BLAST of mRNA_H-paniculata_contig19232.4846.1 vs. uniprot
Match: A0A6H5KNC7_9PHAE (Centrosomal protein of 162 kDa (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC7_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.520e-21
Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:   40 MNTQVDEMERRTARREAELRRVLEESRQQSKIELQRLKSLHAEELSAKDALVHGFRAELDALLSAAGQFM 249
            ++ +V+EMERRTARREAEL+RVL ESRQQSK+EL RL+++HA+E+ AKDALVHGFRAELD LL AAG FM
Sbjct:  633 LSKKVEEMERRTARREAELQRVLSESRQQSKLELSRLRAIHADEMRAKDALVHGFRAELDGLLRAAGSFM 702
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BLAST of mRNA_H-paniculata_contig19232.4846.1 vs. uniprot
Match: A0A7S2RDB9_9STRA (Centrosomal protein of 162 kDa n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RDB9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.500e-5
Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   40 MNTQVDEMERRTARREAELRRVLEESRQQSKIELQRLKSLHAEELSAKDALVHGFRAELDALL 228
            +  ++D ME R + RE EL   +  S++  ++E++RL+++HA ELS KDA++  FR ELD LL
Sbjct:  488 LRNKLDAMEARRSTREGELNSAIALSKEHGRLEVERLQTIHAAELSEKDAIIDRFRRELDWLL 550
[Close]
BLAST of mRNA_H-paniculata_contig19232.4846.1 vs. uniprot
Match: A0A7S2REQ0_9STRA (Centrosomal protein of 162 kDa n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REQ0_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.630e-5
Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   40 MNTQVDEMERRTARREAELRRVLEESRQQSKIELQRLKSLHAEELSAKDALVHGFRAELDALL 228
            +  ++D ME R + RE EL   +  S++  ++E++RL+++HA ELS KDA++  FR ELD LL
Sbjct: 1010 LRNKLDAMEARRSTREGELNSAIALSKEHGRLEVERLQTIHAAELSEKDAIIDRFRRELDWLL 1072
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19232.4846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LRE4_ECTSI9.090e-2272.60Centrosomal protein of 162 kDa n=1 Tax=Ectocarpus ... [more]
A0A6H5KNC7_9PHAE1.520e-2174.29Centrosomal protein of 162 kDa (Fragment) n=1 Tax=... [more]
A0A7S2RDB9_9STRA3.500e-542.86Centrosomal protein of 162 kDa n=1 Tax=Rhizochromu... [more]
A0A7S2REQ0_9STRA3.630e-542.86Centrosomal protein of 162 kDa n=1 Tax=Rhizochromu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19232contigH-paniculata_contig19232:319..609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929468.915074-CDS-H-paniculata_contig19232:318..6091622929468.915074-CDS-H-paniculata_contig19232:318..609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19232 319..609 +
1691480874.9082286-CDS-H-paniculata_contig19232:318..6091691480874.9082286-CDS-H-paniculata_contig19232:318..609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19232 319..609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19232.4846.1prot_H-paniculata_contig19232.4846.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19232 319..609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19232.4846.1

>prot_H-paniculata_contig19232.4846.1 ID=prot_H-paniculata_contig19232.4846.1|Name=mRNA_H-paniculata_contig19232.4846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
NEKPYPRPPARPQMNTQVDEMERRTARREAELRRVLEESRQQSKIELQRL
KSLHAEELSAKDALVHGFRAELDALLSAAGQFMASSSSGNHGGSGGG
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mRNA from alignment at H-paniculata_contig19232:319..609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19232.4846.1 ID=mRNA_H-paniculata_contig19232.4846.1|Name=mRNA_H-paniculata_contig19232.4846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig19232:319..609+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGAGAAACCCTACCCCCGCCCGCCCGCCCGCCCGCAAATGAACACACA
GGTAGACGAGATGGAGCGCCGAACCGCCAGGCGGGAGGCCGAATTGCGTC
GTGTTCTGGAGGAAAGCAGGCAGCAGTCCAAGATAGAGCTACAAAGGCTC
AAATCGCTCCACGCAGAGGAGCTGAGCGCTAAGGATGCTTTGGTGCACGG
CTTCAGGGCGGAGCTCGATGCGCTGCTGAGCGCCGCGGGTCAGTTCATGG
CGAGTTCAAGTAGTGGTAATCATGGGGGTAGTGGTGGCGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19232:319..609+

>mRNA_H-paniculata_contig19232.4846.1 ID=mRNA_H-paniculata_contig19232.4846.1|Name=mRNA_H-paniculata_contig19232.4846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig19232:319..609+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGAGAAACCCTACCCCCGCCCGCCCGCCCGCCCGCAAATGAACACACA
GGTAGACGAGATGGAGCGCCGAACCGCCAGGCGGGAGGCCGAATTGCGTC
GTGTTCTGGAGGAAAGCAGGCAGCAGTCCAAGATAGAGCTACAAAGGCTC
AAATCGCTCCACGCAGAGGAGCTGAGCGCTAAGGATGCTTTGGTGCACGG
CTTCAGGGCGGAGCTCGATGCGCTGCTGAGCGCCGCGGGTCAGTTCATGG
CGAGTTCAAGTAGTGGTAATCATGGGGGTAGTGGTGGCGGAAATGAGAAA
CCCTACCCCCGCCCGCCCGCCCGCCCGCAAATGAACACACAGGTAGACGA
GATGGAGCGCCGAACCGCCAGGCGGGAGGCCGAATTGCGTCGTGTTCTGG
AGGAAAGCAGGCAGCAGTCCAAGATAGAGCTACAAAGGCTCAAATCGCTC
CACGCAGAGGAGCTGAGCGCTAAGGATGCTTTGGTGCACGGCTTCAGGGC
GGAGCTCGATGCGCTGCTGAGCGCCGCGGGTCAGTTCATGGCGAGTTCAA
GTAGTGGTAATCATGGGGGTAGTGGTGGCGGA
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