mRNA_H-paniculata_contig19231.4845.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19231.4845.1
Unique NamemRNA_H-paniculata_contig19231.4845.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19231.4845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19231contigH-paniculata_contig19231:2846..3566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size721
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19231.4845.1prot_H-paniculata_contig19231.4845.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19231 2930..3406 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929468.8348365-UTR-H-paniculata_contig19231:2845..29291622929468.8348365-UTR-H-paniculata_contig19231:2845..2929Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19231 2846..2929 +
1691480874.8834505-UTR-H-paniculata_contig19231:2845..29291691480874.8834505-UTR-H-paniculata_contig19231:2845..2929Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19231 2846..2929 +
1622929468.8719163-UTR-H-paniculata_contig19231:3406..35661622929468.8719163-UTR-H-paniculata_contig19231:3406..3566Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19231 3407..3566 +
1691480874.8993506-UTR-H-paniculata_contig19231:3406..35661691480874.8993506-UTR-H-paniculata_contig19231:3406..3566Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19231 3407..3566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929468.856489-CDS-H-paniculata_contig19231:2929..34061622929468.856489-CDS-H-paniculata_contig19231:2929..3406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19231 2930..3406 +
1691480874.8915687-CDS-H-paniculata_contig19231:2929..34061691480874.8915687-CDS-H-paniculata_contig19231:2929..3406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19231 2930..3406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19231.4845.1

>prot_H-paniculata_contig19231.4845.1 ID=prot_H-paniculata_contig19231.4845.1|Name=mRNA_H-paniculata_contig19231.4845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
MVNVRRKTFSQESCSTQPSYGSAGTRKVEFCAQHAQDRMAIDRTPKSSSR
GHLSQKWSSSSQIKEEVPSGEADGHDGYSGTSEKVGKRNRRTGRLHSDSS
VVRENSRVKRARRGAGLTISEQPALTMPAAGMLSLDDVTNFKTEVTVSRC
SSSDQASQ*
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mRNA from alignment at H-paniculata_contig19231:2846..3566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19231.4845.1 ID=mRNA_H-paniculata_contig19231.4845.1|Name=mRNA_H-paniculata_contig19231.4845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=721bp|location=Sequence derived from alignment at H-paniculata_contig19231:2846..3566+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGAGGGCTGCTCGACATCTCCGTCGTACGGGTCGGCGGGCACGAGAAA
GACAGAGTTCTGTGCGCAGCATGCCAAAGCCGGCATGGTAAACGTGCGGA
GGAAGACGTTTTCTCAGGAGAGCTGCTCTACACAGCCGTCGTACGGGTCG
GCGGGCACGAGAAAGGTAGAGTTCTGTGCGCAGCATGCCCAAGACAGGAT
GGCCATCGACAGAACCCCGAAGAGCAGTAGCCGCGGTCATCTTTCGCAGA
AATGGTCAAGTTCTTCACAGATAAAAGAAGAAGTGCCTTCCGGTGAGGCC
GACGGTCATGACGGGTATTCGGGAACTTCCGAGAAGGTCGGAAAGCGCAA
CCGACGTACTGGGCGTTTACACAGCGATAGTTCTGTTGTGCGCGAGAATT
CCAGAGTGAAAAGGGCTCGCAGGGGCGCGGGATTGACAATCTCGGAGCAG
CCCGCTCTTACCATGCCCGCTGCTGGTATGTTGTCTCTCGATGACGTGAC
CAACTTCAAAACGGAGGTGACTGTGTCGCGATGTTCGTCGTCTGACCAGG
CCTCGCAGTGAGTGTCAGAGGATCCAGATCATGGAGGAGGCGATTATGGG
TGGCTTTCTATGCGCGAGTAACAGCCGCTCATGAATAATGGGAACCAATT
TTTCGATGGAAACAGAGTGCCATTGATTTTCGTTGAAAACTTTCGAAATG
GTGCGACCTGATGGTACAGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig19231:2846..3566+

>mRNA_H-paniculata_contig19231.4845.1 ID=mRNA_H-paniculata_contig19231.4845.1|Name=mRNA_H-paniculata_contig19231.4845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig19231:2846..3566+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAAACGTGCGGAGGAAGACGTTTTCTCAGGAGAGCTGCTCTACACA
GCCGTCGTACGGGTCGGCGGGCACGAGAAAGGTAGAGTTCTGTGCGCAGC
ATGCCCAAGACAGGATGGCCATCGACAGAACCCCGAAGAGCAGTAGCCGC
GGTCATCTTTCGCAGAAATGGTCAAGTTCTTCACAGATAAAAGAAGAAGT
GCCTTCCGGTGAGGCCGACGGTCATGACGGGTATTCGGGAACTTCCGAGA
AGGTCGGAAAGCGCAACCGACGTACTGGGCGTTTACACAGCGATAGTTCT
GTTGTGCGCGAGAATTCCAGAGTGAAAAGGGCTCGCAGGGGCGCGGGATT
GACAATCTCGGAGCAGCCCGCTCTTACCATGCCCGCTGCTGGTATGTTGT
CTCTCGATGACGTGACCAACTTCAAAACGGAGGTGACTGTGTCGCGATGT
TCGTCGTCTGACCAGGCCTCGCAGTGAATGGTAAACGTGCGGAGGAAGAC
GTTTTCTCAGGAGAGCTGCTCTACACAGCCGTCGTACGGGTCGGCGGGCA
CGAGAAAGGTAGAGTTCTGTGCGCAGCATGCCCAAGACAGGATGGCCATC
GACAGAACCCCGAAGAGCAGTAGCCGCGGTCATCTTTCGCAGAAATGGTC
AAGTTCTTCACAGATAAAAGAAGAAGTGCCTTCCGGTGAGGCCGACGGTC
ATGACGGGTATTCGGGAACTTCCGAGAAGGTCGGAAAGCGCAACCGACGT
ACTGGGCGTTTACACAGCGATAGTTCTGTTGTGCGCGAGAATTCCAGAGT
GAAAAGGGCTCGCAGGGGCGCGGGATTGACAATCTCGGAGCAGCCCGCTC
TTACCATGCCCGCTGCTGGTATGTTGTCTCTCGATGACGTGACCAACTTC
AAAACGGAGGTGACTGTGTCGCGATGTTCGTCGTCTGACCAGGCCTCGCA
GTGA
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