mRNA_H-paniculata_contig19208.4839.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19208.4839.1
Unique NamemRNA_H-paniculata_contig19208.4839.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19208.4839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19208contigH-paniculata_contig19208:2618..3612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size997
Cds size948
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929468.267092-UTR-H-paniculata_contig19208:2617..26641622929468.267092-UTR-H-paniculata_contig19208:2617..2664Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19208 2618..2664 +
1691480874.6196096-UTR-H-paniculata_contig19208:2617..26641691480874.6196096-UTR-H-paniculata_contig19208:2617..2664Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19208 2618..2664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929468.282739-CDS-H-paniculata_contig19208:2664..36121622929468.282739-CDS-H-paniculata_contig19208:2664..3612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19208 2665..3612 +
1691480874.632226-CDS-H-paniculata_contig19208:2664..36121691480874.632226-CDS-H-paniculata_contig19208:2664..3612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19208 2665..3612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19208.4839.1prot_H-paniculata_contig19208.4839.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19208 2665..3612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19208.4839.1

>prot_H-paniculata_contig19208.4839.1 ID=prot_H-paniculata_contig19208.4839.1|Name=mRNA_H-paniculata_contig19208.4839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=316bp
MMHILRAALVSSCLLCPSIALVCLNAREKHQNHMHSHRWSSQVAFTFART
SLQCVGSGDGRVTRRKLGIDCGVCFPATLKARTSIRACFTPTRQRPTPIC
RQWPRLVSWTLSSAARSRTSMTTDMMKGCATSNGRGTSGDDYYPDSGCVE
PPPAQALRQASTSVEGERSRCSRAGGPGRRSEPVGRGAAGRRWSRTRPGS
ELAATGSSAGSMADEPIAVPKQGAGGIDKDDPLVKAWNSAKVLNPSRDEF
PQRRGWGVGQGGVGVKPGGEDAGERRGSSQRRLLEDTVRGGARRGAGMYI
SRDLGKQGGGEGRGER
back to top

mRNA from alignment at H-paniculata_contig19208:2618..3612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19208.4839.1 ID=mRNA_H-paniculata_contig19208.4839.1|Name=mRNA_H-paniculata_contig19208.4839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=995bp|location=Sequence derived from alignment at H-paniculata_contig19208:2618..3612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGATGTGTCTCCTAGGTGATATAAGGTGCAGCTTGGAACTGGGGCCATG
ATGCATATCCTGCGGGCGGCGCTTGTAAGTTCATGCCTTCTTTGCCCCAG
CATCGCCCTAGTTTGCTTGAACGCTCGAGAAAAACATCAAAATCACATGC
ACAGCCATCGGTGGTCATCTCAGGTAGCCTTCACTTTCGCTCGAACCAGC
CTGCAGTGTGTGGGGAGTGGTGACGGCCGCGTAACCCGCCGAAAACTCGG
TATCGATTGCGGCGTTTGCTTCCCTGCAACCTTGAAGGCTCGAACTAGTA
TTCGTGCGTGCTTCACACCCACAAGGCAGCGACCAACACCGATATGTAGA
CAGTGGCCCAGATTGGTATCATGGACGCTGTCATCAGCGGCACGATCTCG
CACCTCAATGACAACTGACATGATGAAAGGATGTGCAACTTCCAATGGAA
GGGGCACCTCGGGCGACGACTACTACCCGGATAGCGGATGCGTGGAACCC
CCCCCTGCCCAGGCCCTCCGCCAGGCCTCCACTAGCGTTGAAGGGGAGAG
GAGCAGGTGCAGCAGAGCAGGTGGACCAGGTCGAAGAAGCGAACCTGTGG
GCCGTGGCGCCGCGGGCAGAAGGTGGAGCCGTACTCGGCCCGGCTCTGAA
CTCGCCGCTACTGGGTCATCGGCGGGGAGCATGGCGGATGAGCCTATTGC
GGTGCCAAAACAGGGAGCCGGAGGGATTGACAAAGATGACCCGCTAGTGA
AGGCTTGGAACTCTGCAAAGGTGCTCAATCCCAGCAGGGACGAATTTCCG
CAAAGGCGGGGCTGGGGCGTCGGGCAGGGTGGAGTAGGGGTCAAGCCTGG
AGGGGAAGACGCCGGCGAGAGAAGAGGCAGTTCGCAGAGGCGACTTCTGG
AGGACACGGTGAGAGGTGGCGCCAGACGAGGTGCAGGTATGTATATTAGT
CGGGATTTGGGGAAGCAAGGCGGCGGCGAGGGGCGCGGAGAGCGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig19208:2618..3612+

>mRNA_H-paniculata_contig19208.4839.1 ID=mRNA_H-paniculata_contig19208.4839.1|Name=mRNA_H-paniculata_contig19208.4839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at H-paniculata_contig19208:2618..3612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCATATCCTGCGGGCGGCGCTTGTAAGTTCATGCCTTCTTTGCCC
CAGCATCGCCCTAGTTTGCTTGAACGCTCGAGAAAAACATCAAAATCACA
TGCACAGCCATCGGTGGTCATCTCAGGTAGCCTTCACTTTCGCTCGAACC
AGCCTGCAGTGTGTGGGGAGTGGTGACGGCCGCGTAACCCGCCGAAAACT
CGGTATCGATTGCGGCGTTTGCTTCCCTGCAACCTTGAAGGCTCGAACTA
GTATTCGTGCGTGCTTCACACCCACAAGGCAGCGACCAACACCGATATGT
AGACAGTGGCCCAGATTGGTATCATGGACGCTGTCATCAGCGGCACGATC
TCGCACCTCAATGACAACTGACATGATGAAAGGATGTGCAACTTCCAATG
GAAGGGGCACCTCGGGCGACGACTACTACCCGGATAGCGGATGCGTGGAA
CCCCCCCCTGCCCAGGCCCTCCGCCAGGCCTCCACTAGCGTTGAAGGGGA
GAGGAGCAGGTGCAGCAGAGCAGGTGGACCAGGTCGAAGAAGCGAACCTG
TGGGCCGTGGCGCCGCGGGCAGAAGGTGGAGCCGTACTCGGCCCGGCTCT
GAACTCGCCGCTACTGGGTCATCGGCGGGGAGCATGGCGGATGAGCCTAT
TGCGGTGCCAAAACAGGGAGCCGGAGGGATTGACAAAGATGACCCGCTAG
TGAAGGCTTGGAACTCTGCAAAGGTGCTCAATCCCAGCAGGGACGAATTT
CCGCAAAGGCGGGGCTGGGGCGTCGGGCAGGGTGGAGTAGGGGTCAAGCC
TGGAGGGGAAGACGCCGGCGAGAGAAGAGGCAGTTCGCAGAGGCGACTTC
TGGAGGACACGGTGAGAGGTGGCGCCAGACGAGGTGCAGGTATGTATATT
AGTCGGGATTTGGGGAAGCAAGGCGGCGGCGAGGGGCGCGGAGAGCGGAT
GATGCATATCCTGCGGGCGGCGCTTGTAAGTTCATGCCTTCTTTGCCCCA
GCATCGCCCTAGTTTGCTTGAACGCTCGAGAAAAACATCAAAATCACATG
CACAGCCATCGGTGGTCATCTCAGGTAGCCTTCACTTTCGCTCGAACCAG
CCTGCAGTGTGTGGGGAGTGGTGACGGCCGCGTAACCCGCCGAAAACTCG
GTATCGATTGCGGCGTTTGCTTCCCTGCAACCTTGAAGGCTCGAACTAGT
ATTCGTGCGTGCTTCACACCCACAAGGCAGCGACCAACACCGATATGTAG
ACAGTGGCCCAGATTGGTATCATGGACGCTGTCATCAGCGGCACGATCTC
GCACCTCAATGACAACTGACATGATGAAAGGATGTGCAACTTCCAATGGA
AGGGGCACCTCGGGCGACGACTACTACCCGGATAGCGGATGCGTGGAACC
CCCCCCTGCCCAGGCCCTCCGCCAGGCCTCCACTAGCGTTGAAGGGGAGA
GGAGCAGGTGCAGCAGAGCAGGTGGACCAGGTCGAAGAAGCGAACCTGTG
GGCCGTGGCGCCGCGGGCAGAAGGTGGAGCCGTACTCGGCCCGGCTCTGA
ACTCGCCGCTACTGGGTCATCGGCGGGGAGCATGGCGGATGAGCCTATTG
CGGTGCCAAAACAGGGAGCCGGAGGGATTGACAAAGATGACCCGCTAGTG
AAGGCTTGGAACTCTGCAAAGGTGCTCAATCCCAGCAGGGACGAATTTCC
GCAAAGGCGGGGCTGGGGCGTCGGGCAGGGTGGAGTAGGGGTCAAGCCTG
GAGGGGAAGACGCCGGCGAGAGAAGAGGCAGTTCGCAGAGGCGACTTCTG
GAGGACACGGTGAGAGGTGGCGCCAGACGAGGTGCAGGTATGTATATTAG
TCGGGATTTGGGGAAGCAAGGCGGCGGCGAGGGGCGCGGAGAGCGG
back to top