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Homology
BLAST of mRNA_H-paniculata_contig192.4836.1 vs. uniprot
Match: A0A6H5JNM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM1_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 5.230e-22 Identity = 53/92 (57.61%), Postives = 66/92 (71.74%), Query Frame = 1
Query: 19 IAAHERELAREVSSGGMRSLTALRDYIAQLNNG-----ESGFLTEKQMFEALREAGYALDTEFVGVLRTGLGMDSDGKVDLVEFMGMCEDIA 279
IAAHER+LA E+S GGM SL LR+ ++ E GF +++Q+F ALR +GYAL+ E V VLRTGLG D+ G+VDL EFMGMCEDIA
Sbjct: 588 IAAHERKLAWEISCGGMGSLARLRENTGRVGPAAAVAAEDGFWSDEQVFLALRNSGYALELEDVAVLRTGLGNDAKGRVDLEEFMGMCEDIA 679
BLAST of mRNA_H-paniculata_contig192.4836.1 vs. uniprot
Match: D7G7I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I0_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 2.220e-20 Identity = 49/92 (53.26%), Postives = 66/92 (71.74%), Query Frame = 1
Query: 19 IAAHERELAREVSSGGMRSLTALRDYIAQLNNGES-----GFLTEKQMFEALREAGYALDTEFVGVLRTGLGMDSDGKVDLVEFMGMCEDIA 279
IAAHER+LA E+S GGM SL LR+ ++ + GF +++Q+F ALR +GYAL+ E V VLRTGLG D+ G+VD+ EF+GMCED+A
Sbjct: 597 IAAHERKLAWEISCGGMGSLARLRENTGRVGPATAVAAGDGFWSDEQVFLALRNSGYALELEDVAVLRTGLGSDAKGRVDVEEFVGMCEDVA 688
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 95.1 |
| Seed ortholog evalue | 1.8e-17 |
| Seed eggNOG ortholog | 2880.D7G7I0 |
| KEGG ko | ko:K02183,ko:K14684,ko:K15100,ko:K16466 |
| KEGG TC | 1.I.1,2.A.29.23,2.A.29.7 |
| KEGG Pathway | ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | Ca2 -binding protein (EF-Hand superfamily |
| EggNOG OGs | COG5126@1,KOG0027@2759 |
| COG Functional cat. | DTZ |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01009,ko02000,ko03019,ko03036,ko04131,ko04147 |
| Exons | 2 |
| Model size | 281 |
| Cds size | 279 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig192.4836.1 >prot_H-paniculata_contig192.4836.1 ID=prot_H-paniculata_contig192.4836.1|Name=mRNA_H-paniculata_contig192.4836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
GKHFLEIAAHERELAREVSSGGMRSLTALRDYIAQLNNGESGFLTEKQMF
EALREAGYALDTEFVGVLRTGLGMDSDGKVDLVEFMGMCEDIA back to topmRNA from alignment at H-paniculata_contig192:35781..38844- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig192.4836.1 ID=mRNA_H-paniculata_contig192.4836.1|Name=mRNA_H-paniculata_contig192.4836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3064bp|location=Sequence derived from alignment at H-paniculata_contig192:35781..38844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAACATTTTCTCGAAATAGCCGCTCATGAACGAGAGCTAGCACGGGA
GGTGTCCAGCGGAGGTATGCGGTCGCTTACTGCTCTGAGGGACTACATCG
CGCAGTTGAATAATGGCGAAAGCGGGTTTTTGACGGAAAAACAGGTGAGC
CATGCCTTCTAGCCGCCGTCCCATTAAGATCGATACGTTGAGAAATTCTT
AATATGGGGAGGCCAAGGGTAGTGGGCGTTTGAAGGTTCTTGTATTCAAA
TACATGTGATTTTGGCTACCCATGTCGACGATGCAGTTTGCTTTACGAAA
TCCGTATGTTAACGATGTCGTTAGCTCCTCGACTTTTATGTTCCCGCATT
ATGTGGTATGTGATTATTATATCTGATTAGGCGTATATACTCAAGTACCT
TGTTTTTCGTTGTGCTACTTTTGTCTTTACGATTAGGAACACGTGTCTTT
TTCTGTCCGTTCTTCCTGCTTCTTCTACCCCTCCCCCCCCCGCCCTCCAG
CCTCGGCCCTACGTCGGTGGCGACCGTACAACGAGATGATACTCTTCCCT
ATAACCCTTCGCTACTTTGCCCGGTATTTTCGATTACGGTTATTGATGAC
AACTCTACGTGTGTTATGGAGTTGTGTCGCACCTACCTACGATTCTACTA
TCCGTCTTTTGTAGGTTAATTTCTCCGCCTCCCAAGTTTTCCTACTTCGA
AATATGCTTCATTTTTCCCGAGCGCTTCTTCTCGGTAAACTGATGCCTTT
GTGTTATTGTCTTCTATTTCTTACTGTAATGTGGTGATATTGCATAGGAT
TGTTGTACACGTGCCCTCTTGCCCCCTTCAGCGCGTTAACACGGGAAAGG
GGTGGATCAGTATCTGGCGGATGAACTTGAAAATTACGCCAGCAGAATTG
ATCGCCCATCGAGCCTGGAAGGGGGGGGCGGGGAGTCTCTGAGTGCGGAA
AACAAGTAATGAGACTGCCTGCTGATTGGAACGGCTTCCTATATGCCACA
TGAGAATCTGACTTGAAATTGGTCTGGGGGATGGACCAGACTTTTGACCC
TTGAAGGGGCTACCTGAGGAAGCTGGGGGAGGGGTGGCGATCGGTATACT
TCACTCGTAATGCATCACTCATTGTAGGACTACCTCTTGTTGTACGCTAC
AGGAAAGTGTGTAATGGGATTTACTCTACGACAAAACTTACGTGACTAAG
TCCAACGCGAACGTGACGAAATATAACCTAATTTCTACACTGCAACCCTT
TACTTGTGTTTTCGTTTGTTCCAAATTCTAATGACGGAATTCTGAATAGG
GAGTCTCTTTCCAACTACAGTAGGAGTCCCTATATAAGGTATAGTCGTAC
AGAGCTAACATATCTTATATAGAACCTATACCGTATTCAGAGGACCCTAT
ATATGGCATACATACCTTGTACAGGGTCAAGTCAATATCATTGGCCTTGT
GTAAGCGTGTAACCTGACGCGACGAGCAGCGCGCCTCGGGGATGAGGTGT
ACTGTTGTACCGTCATGTTGTTCGAAACTAATGCATTCATGTTTGGTCTG
CTCTGCACGCGGCTGTGCCTACAGTAGCCCTCTCTCCCCTACACAAATCA
ACAAAGATCAAAGACAAGTCCCAAGTACTGCAACCTAGTTCGATATACAT
ATGCTGCTGTACGACCCTGCTAGTAATATACTCCACATATACCCACCATA
GTATTCCATCGGTCGACTGCAAAATAAAAGGAGGATATACAGAGTACAAA
ATTATAGAGGAGGTCCACCTGCTACTGCAGTACACGCCCCCTACCATACA
ACTCTACTGTCCGTCTGACACTCCGTCATTTGGCCGGGCTTAAGAGCAGC
TGCAGGTAGGTCTGTATTTTTGCTGGGCTCGCCTGCGCCTCTACAGACGA
CATCCTTGGACCACGTAGCCCTTCAATCGTTTGATCTACGCCACACGCTG
CCGTCGCCTGCTGCAGCAGAGCAAAGAATGTTCGGAACGTTCCATGTGGT
ATACCTTATATCTGGCCACCGACTGCACTTTTATACCATATACAGACCTG
GCTATACGGTATACCTCCTATCGGGAAAATTGGTGTCACTCTGAAAATTA
TACCTTATATAGGGCCGATAGGGTCACCTACTGTACCGGATAGCGCAATG
AGCTCTGCACAGTTTATCGGCGTCAATATGGTAATATTCGGAATGGAACC
ACCACTTTCACTTCATTCCAGGTGTCGATCTATGATTACATTCCGAACCA
CTTCCACCACCGACTATACCGTTTCAGAGTGAATGACCACCCGAAAACTT
CAGGTAGTCGAAGCAACGCGTTATTGAATAATAAGCAGTCACGACTCTTC
CAATGATGTGTATTGTCGAGTCGTGGGGTGTGTCACGGTGGAAGGTACAT
CTGGTTGACTAGGTGTGACGGTTACCATTAAGGAGAGCATTTAAACAGCA
TTTTCCAGACGACTGAGAGGTACGGCAAGAAACACAAGCTATCTCAAGGT
TATGTGAGGACATCCAACGGCCAATTATACACCTTGGGTCATTTGCCTAA
TCGCAAACAACTCATGATAGGCTTGATGATGCCTTCTCGTCAGTAGCATT
GCACCCAACCTGCTTTTGATTTTCTTGGAATAGTGAATCTCGAGATGTTG
GGGATATACCCTAGACTGCAACAGTTACCTGTTAGTTGGGAAATGTAAAA
AGGGAGACCAAAGTTTAAGAAGCGGCCACCGTTATCACAACAGCGAGTGG
ATATTGACAACATTATGAAAAATATTGTTCCAAGGCGACCTTCACCTTTG
CTTCATTTTCAGGACAAATGGGTTCATCGCGAGTTTTGTCGCTTGGCTAA
AAGTGCCATTACTTGTTCGTACACGACACGGAAAACTTCCTCCGTCCATG
CTACCACCTGAAAACGACGATGAACAGATGTTCGAGGCTTTGAGGGAGGC
TGGATACGCCTTGGACACAGAGTTCGTCGGCGTTCTAAGAACTGGTCTCG
GAATGGATTCAGACGGGAAGGTGGATCTGGTCGAGTTCATGGGCATGTGC
GAAGACATCGCCTC back to topCoding sequence (CDS) from alignment at H-paniculata_contig192:35781..38844- >mRNA_H-paniculata_contig192.4836.1 ID=mRNA_H-paniculata_contig192.4836.1|Name=mRNA_H-paniculata_contig192.4836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig192:35781..38844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAACATTTTCTCGAAATAGCCGCTCATGAACGAGAGCTAGCACGGGA
GGTGTCCAGCGGAGGTATGCGGTCGCTTACTGCTCTGAGGGACTACATCG
CGCAGTTGAATAATGGCGAAAGCGGGTTTTTGACGGAAAAACAGGGGAAA
CATTTTCTCGAAATAGCCGCTCATGAACGAGAGCTAGCACGGGAGGTGTC
CAGCGGAGGTATGCGGTCGCTTACTGCTCTGAGGGACTACATCGCGCAGT
TGAATAATGGCGAAAGCGGGTTTTTGACGGAAAAACAGATGTTCGAGGCT
TTGAGGGAGGCTGGATACGCCTTGGACACAGAGTTCGTCGGCGTTCTAAG
AACTGGTCTCGGAATGGATTCAGACGGGAAGGTGGATCTGGTCGAGTTCA
TGGGCATGTGCGAAGACATCGCCATGTTCGAGGCTTTGAGGGAGGCTGGA
TACGCCTTGGACACAGAGTTCGTCGGCGTTCTAAGAACTGGTCTCGGAAT
GGATTCAGACGGGAAGGTGGATCTGGTCGAGTTCATGGGCATGTGCGAAG
ACATCGCC back to top
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