|
|
Homology
BLAST of mRNA_H-paniculata_contig192.4835.1 vs. uniprot
Match: A0A6H5JNM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM1_9PHAE) HSP 1 Score: 137 bits (344), Expect = 1.310e-33 Identity = 88/186 (47.31%), Postives = 118/186 (63.44%), Query Frame = 1
Query: 52 PEASLFLGGTVFGERRFLQNASESVEGVVDELKDQLALLDLDSL--KGDNSSGNDHSGNEIKCTLGAAVRNKFVRRDPLHSGMLSARELGLALEDLGVTLLPGEVVMLARKFHPP---SKQSLLIDECHALRIDGASGPGASSPGRVKGGVVKNEDLDDTIAEYAPLVRLIVDTLVEALGTGSTPG 594
P +L+LGGTV+GE+ FL+ +++VE V+ ELKDQL+LLD+D L D+ + SG TLG AV +F RRDP SG+LSARE+GLALED+GV L EV+ LA++F PP ++S + R +G + GA++ + GG LD +AEYAPLVRL+VDTL EA G S G
Sbjct: 775 PLETLYLGGTVYGEKSFLE-PTKTVESVLAELKDQLSLLDIDHLFPARDHGARGTGSGEVAVTTLGKAVGARFSRRDPTQSGLLSAREVGLALEDVGVCLQADEVITLAKRFKPPVGGPQESRGSGNDRSRRREGYAS-GAATVVDLDGG-----GLDGVVAEYAPLVRLVVDTLAEASGVDSAVG 953
BLAST of mRNA_H-paniculata_contig192.4835.1 vs. uniprot
Match: D7G7I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I0_ECTSI) HSP 1 Score: 133 bits (335), Expect = 2.240e-32 Identity = 85/199 (42.71%), Postives = 109/199 (54.77%), Query Frame = 1
Query: 52 PEASLFLGGTVFGERRFLQNASESVEGVVDELKDQLALLDLDSL--KGDNSSGNDHSGNEIKCTLGAAVRNKFVRRDPLHSGMLSARELGLALEDLGVTLLPGEVVMLARKFHPP----------------SKQSLLIDECHALRIDGASGPGASSPGRVKGGVVKNEDLDDTIAEYAPLVRLIVDTLVEALGTGSTPG 594
P +L+LGGTV+GER FL+ S++VE V+ ELKDQL+LLD+D L D+ + SG TLG AV +F RRDP SG+LSARE+GLALED+GV L EV+ LA+ F PP ++ D A+ +DG LD +AEYAPLVRL+VD+L EA G G
Sbjct: 786 PHETLYLGGTVYGERTFLE-PSKTVESVLAELKDQLSLLDIDHLIPARDHGARGTGSGEGAVTTLGKAVGARFSRRDPTQSGLLSAREVGLALEDVGVRLQADEVITLAKSFKPPVGGPQENRGNGSDLSRGREGYASDAATAIDLDGGG-------------------LDGVVAEYAPLVRLVVDSLAEASGVDPAVG 964
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 133.7 |
| Seed ortholog evalue | 1e-28 |
| Seed eggNOG ortholog | 2880.D7G7I0 |
| KEGG ko | ko:K02183,ko:K14684,ko:K15100,ko:K16466 |
| KEGG TC | 1.I.1,2.A.29.23,2.A.29.7 |
| KEGG Pathway | ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | Ca2 -binding protein (EF-Hand superfamily |
| EggNOG OGs | COG5126@1,KOG0027@2759 |
| COG Functional cat. | DTZ |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01009,ko02000,ko03019,ko03036,ko04131,ko04147 |
| Exons | 4 |
| Model size | 632 |
| Cds size | 630 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig192.4835.1 >prot_H-paniculata_contig192.4835.1 ID=prot_H-paniculata_contig192.4835.1|Name=mRNA_H-paniculata_contig192.4835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=210bp
LLDAGGSLSKSHHVCRPPEASLFLGGTVFGERRFLQNASESVEGVVDELK
DQLALLDLDSLKGDNSSGNDHSGNEIKCTLGAAVRNKFVRRDPLHSGMLS
ARELGLALEDLGVTLLPGEVVMLARKFHPPSKQSLLIDECHALRIDGASG
PGASSPGRVKGGVVKNEDLDDTIAEYAPLVRLIVDTLVEALGTGSTPGMD
TRRVGGRRW* back to topmRNA from alignment at H-paniculata_contig192:31292..34671- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig192.4835.1 ID=mRNA_H-paniculata_contig192.4835.1|Name=mRNA_H-paniculata_contig192.4835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3380bp|location=Sequence derived from alignment at H-paniculata_contig192:31292..34671- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTGGATGCCGGTGGAAGCTTATCAAAATCGCATCACGTTTGTCGACC
CCCGGAAGCTTCGCTGTTCCTTGGCGGCACCGTTTTCGGCGAAAGAAGGT
TCTTGCAAAATGCGTCGGAAAGCGTCGAAGGTGTTGTGGATGAGGTGAGC
GAGAGTGTGCAAGAAGTGGTACGATAAGGCGTACGGGACCCTACAGAGCT
GGGGTTCATCACTGTGTTTCCAAGGTCACCAATGAAGCGGACATTTGTTA
CCCCTGGCGCCACCAGCGAGATTCCAGGAAACCATGTACGTTGTACCCTC
CCGAGCATGACGCACGAAATTGGTCTCTGTAGTATTCTTAGTATTTCACT
AGCACCTTGGGCCACGTCCGCTAGTGGTGGAATACGAGAAATTGGCAAAG
GGCGGTTCATGTATGAAACGGAGAACCTGGAGACACTATCCTCACACGAA
TATCGGATACTGGAGCGTGAGATAGTTCTTTCAAATGCCCATCCATCTCA
CCCTGTATCATTGGCCTCCTCGAACCGAGGACGGTATTGGCCCCGTTAAC
CGTCAACAATCAGCTTTTGCCTTTAAGCGGTAATAGCCTTTCATGCTATC
TGAGCTCAAGATGCACCGCTTCAGAAGCAACCGTTGTCGATGAAACACAC
GAGACAAATAGTTTCAAACCCTTTGGTTGTTTTCTAGACTGCACGATGTG
ACGATGAGCACTGCCCCTTTCCCCCTACCCCCGTCGTCTCTCTCAGCTGA
AGGATCAGCTGGCGTTACTTGACCTCGACAGCCTCAAAGGTGACAATTCG
TCTGGTAACGACCACAGTGGTAATGAAATTAAGTGCACGTTGGGGGCAGC
CGTTCGCAACAAGTTTGTTCGGAGGGATCCTCTTCATTCCGGGATGCTGA
GTGCGAGGGAGCTGGGGTTGGCGTTAGAAGACCTCGGGGTGACTCTGCTG
CCTGGAGAGGTATAAAAGCGTGTAATCATGACTCTCGAACGTATCTTAAC
CCTCGCAAGTTTACCCGTGCTCTATCACGTTGAGCGGTATTTCTGTTGAG
GAGTGTACATGATACGATGCATGTATTTTAGCTTGATACTCCTAGGTGTC
AGCTCGGATGACAACTTCCCGTAACTTGCGCGTAGGCAATACCAGTACCA
CAATTGACTTAGTGTTTGATCACCCTATAAGTTCACGGCGCTCAAAATCG
ACACTTTTTCGAAGCGCACTTGTGGCTCTTCACAAACGCCATGTTGCACA
ACGGGCGTAACCTTCCGCTTGATCATCCCCCGATCCTTCCGTCAGCTGTT
GGGTGAGTTAATCCACGCTCGCACCCCGCGTACAGTGAGGATAGAGTGGG
TGAGTAAGCGAGGCTGAATCAAACGAGAAGATGAACCCGAGCTGGATTAT
TTTGGTAGTTGGACACGCACGAACGTAAACTTGCACGACAGGACTTCCTT
CGCCGTTGGTACGTTTAATACCACGCCACAGGTTGTGATGCTCGCCAGAA
AATTCCACCCCCCGAGTAAACAGTCCCTGCTGATCGACGAATGTCACGCA
TTGCGGATAGATGGGGCGAGCGGCCCCGGGGCGTCTTCCCCGGGAAGGGT
GAAAGGAGGAGTTGTGAAAAATGAAGATTTAGATGACACTATCGCCGAGT
ACGCCCCGCTGGTTAGGTGAGTTCAGGTGGAGGAAAGGTTTCGTTCGGTT
CAAATGTGCTCGTTGGAGCAAGCAACTTGTATCCTCTCGACTTTTTCTTG
TTGCGTGAAAAAGTTGTATAAGTAACTGCACGGCCAGGAAAAACAGTAGG
CGCTGAGATTCGAGGTCTATACTATACCACCCTTTGCAGTTTTAGGTAAA
AGGATAAGTGTCGAGGCCCGAGCGAATTTTTCAATCTCAACTCTGCCAAT
TGTTGTTATCTTTGGCTCGTGTGTGTATTCCCGCGTACCCACCAACGAGG
CAGCACTTGGACCTTGGAGAGGGAAAACCTACTTTGGTGACCTCAAAAAT
GTATGCTGAGAACATCCGACATTTTCCACGGCTGTCGGTATCGTGCAAAA
ATACATATATAAAAGAAATCAATAAATCAAATGTTTTCTTCTCTATCGAA
GGATAAAACATTAGTCTCATGATTCACTCAAAATGTTTCGAATCTCCACG
GAAGGCGTTTAACAGGGAAAATGGGGTCGCTTCCAAGTATTCACGGTTAA
CGTAATATGTTTCGTATTTGTGCTGATATGCCGGCATCTCACGTCGTCAA
TGATTGTCGATACTTCTTTTCGCGAGTTCCTCTTGCTCTCAACCGTCTAC
AGGTCAACTTTACCCCATATATTCGAAAGCTGCATTTTTTCTTGCTACGT
ACCAGATTATACGATGCTATCGTTGCAGTAGACTCTAGGGTTGTACGGTA
TAGCAATCAGTATACGATACACCTATCTGAGTACCGTAATACCAGGAGGT
ATCACACCCAGTGCGAAGCGAAAAAATTCGTGCGTGACAGATCACACGGT
GCAATACCCGCGGAGGTACGATACCTACGGGGGGGGTGCGAAAAACGTCC
GTTACGGTCCGAAGAGATCACACACCGGGTTCAAACGGAGAAACTCTTAT
CGGTCGGGTCGAGAGTGGGGGTGCGAAGGGAGCGGGGTGCGAGCCGAAAA
ATTAACAAATCTTGGCACCTGTAGATAGGACTAAACCATATTAAATTCAG
TCTAAATATGTTGCGCATGTTCATTTATCTTCAAGGGAACCGATTTGTGA
ACAACCAAAGTTGCGTGTTTTCTCCGTTCATTGTCGCTTGTCCTGCCGAT
GAACTGTGCGACTGCAGGGGAGCGACAAGACACACTCCGCAATGACGGTT
TGATGGTACATGAGGACATTTTCGCCCCACCCCCTACCTGCCCGCACCTC
TGATGTCACCGCATCCCCCGTAGATATCGCACCCCAGTGCGATACCTACG
CGGGGAGGAGTCACTAATGTTTAACAACATATACCACTGTGTTGCAAGAC
TCCGCGCAAACCTGAAGGCTAGGCAACTATTTAGCTTAATGCCACAGTGC
TATGCCCTACACAACGAACGAATGTGGCAACCTAACGTTTTTATATCCTC
TAAACACGCTTTGATTTCCTCAATGAAACATATCTCTATGCATGGCCATC
GCCATAGATTCGGCGCGACGAGGGGTTCTCTCCTATACACCCCCCCCTCT
CTCGCTCCCACCGTCACATTTGCCCTTACTGTAAGAGATTGACCGTATTC
CCTTGGAAGCACTCACCCCGAGTATCGCGTGCACCTCCCCAGGCTGATCG
TAGATACTCTCGTTGAAGCGCTTGGGACGGGCTCTACACCGGGCATGGAC
ACTCGGCGGGTTGGCGGTAGGAGGTGGTAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig192:31292..34671- >mRNA_H-paniculata_contig192.4835.1 ID=mRNA_H-paniculata_contig192.4835.1|Name=mRNA_H-paniculata_contig192.4835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig192:31292..34671- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTGGATGCCGGTGGAAGCTTATCAAAATCGCATCACGTTTGTCGACC
CCCGGAAGCTTCGCTGTTCCTTGGCGGCACCGTTTTCGGCGAAAGAAGGT
TCTTGCAAAATGCGTCGGAAAGCGTCGAAGGTGTTGTGGATGAGTTGTTG
GATGCCGGTGGAAGCTTATCAAAATCGCATCACGTTTGTCGACCCCCGGA
AGCTTCGCTGTTCCTTGGCGGCACCGTTTTCGGCGAAAGAAGGTTCTTGC
AAAATGCGTCGGAAAGCGTCGAAGGTGTTGTGGATGAGCTGAAGGATCAG
CTGGCGTTACTTGACCTCGACAGCCTCAAAGGTGACAATTCGTCTGGTAA
CGACCACAGTGGTAATGAAATTAAGTGCACGTTGGGGGCAGCCGTTCGCA
ACAAGTTTGTTCGGAGGGATCCTCTTCATTCCGGGATGCTGAGTGCGAGG
GAGCTGGGGTTGGCGTTAGAAGACCTCGGGGTGACTCTGCTGCCTGGAGA
GCTGAAGGATCAGCTGGCGTTACTTGACCTCGACAGCCTCAAAGGTGACA
ATTCGTCTGGTAACGACCACAGTGGTAATGAAATTAAGTGCACGTTGGGG
GCAGCCGTTCGCAACAAGTTTGTTCGGAGGGATCCTCTTCATTCCGGGAT
GCTGAGTGCGAGGGAGCTGGGGTTGGCGTTAGAAGACCTCGGGGTGACTC
TGCTGCCTGGAGAGGTTGTGATGCTCGCCAGAAAATTCCACCCCCCGAGT
AAACAGTCCCTGCTGATCGACGAATGTCACGCATTGCGGATAGATGGGGC
GAGCGGCCCCGGGGCGTCTTCCCCGGGAAGGGTGAAAGGAGGAGTTGTGA
AAAATGAAGATTTAGATGACACTATCGCCGAGTACGCCCCGCTGGTTAGG
TTGTGATGCTCGCCAGAAAATTCCACCCCCCGAGTAAACAGTCCCTGCTG
ATCGACGAATGTCACGCATTGCGGATAGATGGGGCGAGCGGCCCCGGGGC
GTCTTCCCCGGGAAGGGTGAAAGGAGGAGTTGTGAAAAATGAAGATTTAG
ATGACACTATCGCCGAGTACGCCCCGCTGGTTAGGCTGATCGTAGATACT
CTCGTTGAAGCGCTTGGGACGGGCTCTACACCGGGCATGGACACTCGGCG
GGTTGGCGGTAGGAGGTGGTAAGCTGATCGTAGATACTCTCGTTGAAGCG
CTTGGGACGGGCTCTACACCGGGCATGGACACTCGGCGGGTTGGCGGTAG
GAGGTGGTAA back to top
|