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Homology
BLAST of mRNA_H-paniculata_contig192.4832.1 vs. uniprot
Match: D7G7I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I0_ECTSI) HSP 1 Score: 160 bits (405), Expect = 4.870e-40 Identity = 82/156 (52.56%), Postives = 109/156 (69.87%), Query Frame = 3
Query: 72 LVGCIGDRRICQDGAVDRLSDLLDDEGDGRVNYRSFLKMVLNYMGDWTKRLPQVASELSLSLEHNQYGRLSCLENLARRLEIADVNEVGRLSPTALGRCLRGVGLTLSQENLREMAIVMDAEGDGRIPVAPVLQFLQDEAGDFARGRRRGKTQRQV 539
L G + + +D VDRLS LLDD+GDGRV+YRS L +++ ++GDW KR+P+VASELSL+L++ QYG +C+EN +RRL IAD GRL P+ RCLR VGL+L+ E+L EM V+DA GD IP+ PVL+FL+ EAG G G Q+Q
Sbjct: 1458 LASLPGTQDLTED-EVDRLSTLLDDQGDGRVSYRSLLDLLVRHLGDWHKRIPKVASELSLALQNTQYGLKACVENFSRRLNIADHKSTGRLPPSTFARCLRSVGLSLAPESLGEMVSVLDAYGDELIPITPVLEFLRREAGISPEG---GDVQQQA 1609
BLAST of mRNA_H-paniculata_contig192.4832.1 vs. uniprot
Match: A0A6H5JP00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP00_9PHAE) HSP 1 Score: 155 bits (393), Expect = 5.710e-39 Identity = 89/186 (47.85%), Postives = 118/186 (63.44%), Query Frame = 3
Query: 72 LVGCIGDRRICQDGAVDRLSDLLDDEGDGRVNYRSFLKMVLNYMGDWTKRLPQVASELSLSLEHNQYGRLSCLENLARRLEIADVNEVGRLSPTALGR-----------CLRGVGLTLSQENLREMAIVMDAEGDGRIPVAPVLQFLQDEAGDFARGRRRGKTQRQVEKYAELC*LVPESYPSFAK 596
L G + + +D VDRLS LLDD+GDGRV+YRS L +++ ++GDW KR+P+VASELSL+L++ QYG +C+ENL+RRL IAD GRL P+ R CLR VGL+L+ E+L EM V+DA GDG IP+ PVL+FL+ EAG G G Q+Q E+ E+ S AK
Sbjct: 78 LASLPGTQDLTED-EVDRLSTLLDDQGDGRVSYRSLLDLLVRHLGDWHKRIPKVASELSLALQNTQYGLKACVENLSRRLNIADHKSTGRLPPSTFTRYGLELSSSGKRCLRSVGLSLAPESLGEMVSVLDAYGDGLIPITPVLEFLRREAGISPEG---GDMQQQAG--GEVGFAFREAVRSLAK 257
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 126.7 |
| Seed ortholog evalue | 7.6e-27 |
| Seed eggNOG ortholog | 2880.D7G7I0 |
| KEGG ko | ko:K02183,ko:K14684,ko:K15100,ko:K16466 |
| KEGG TC | 1.I.1,2.A.29.23,2.A.29.7 |
| KEGG Pathway | ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | Ca2 -binding protein (EF-Hand superfamily |
| EggNOG OGs | COG5126@1,KOG0027@2759 |
| Ec32 ortholog description | EF-hand domain pair |
| Ec32 ortholog | Ec-02_000360.1 |
| COG Functional cat. | DTZ |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01009,ko02000,ko03019,ko03036,ko04131,ko04147 |
| Exons | 7 |
| Model size | 1006 |
| Cds size | 378 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig192.4832.1 >prot_H-paniculata_contig192.4832.1 ID=prot_H-paniculata_contig192.4832.1|Name=mRNA_H-paniculata_contig192.4832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MVLNYMGDWTKRLPQVASELSLSLEHNQYGRLSCLENLARRLEIADVNEV
GRLSPTALGRCLRGVGLTLSQENLREMAIVMDAEGDGRIPVAPVLQFLQD
EAGDFARGRRRGKTQRQVEKYAELC* back to topmRNA from alignment at H-paniculata_contig192:14480..20968- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig192.4832.1 ID=mRNA_H-paniculata_contig192.4832.1|Name=mRNA_H-paniculata_contig192.4832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6489bp|location=Sequence derived from alignment at H-paniculata_contig192:14480..20968- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGGAGCATCGGATCTGCTGCAGGCGCTTCGGGACGGAGGGTGCTCTTT
GCGCGTGGAGGAGGAGGCCCGCTTGTTGGATGCATTGGAGATAGAAGAAT
CTGCCAGGTAGATGCAGTACTGGCTTAGTCATGAGTAACACCACTGTCGA
CTGTACGACTGTCGGCCGTACGAAACATCTCTGAGACTTGCGGAAATGAA
GAAAACAGATGAGCCTAGGAGCTCGTTGAAACTGTACGCAATCTAGGACA
GTGCTGGCTTGCTTCGCAAAAATACGAAACGCGGCCTGAGTCTGAAGTTC
AGAGTTTCACGAGCGGGCCGGTAGGTACTGCCTGGGTGGAGGAAGAAGGA
AAAGGCTCAGTTTTCTGATCGTCCAATATTTTGAAAGGGGTGAACTGATT
GGTCGAAAATTCATAGTATATAAAGGAGTCAGTCATGGTCATGACGCCAC
TGTTGGAATAGGGCAATGTTCACGTCACCGTCTGTACCCTCGTCACGTGT
ACACGGGTTGAAGGCTATCATCGGTGTAAATGAATCTCACTCGTTACAGA
AACGTCTGAGAGTTTACCTCGAATATTTACGACCGTAATTACTCCGCTCG
AAATCATTTCTTCACTGCAACATTTATCCTTATGTGACTGTCATCCAAAG
TTTTGTCGATGACTCAGATGGCTCCTTACACCAATGTTGACCAATAGGAA
ACCGCGTGTACGCTCTCGCTTTCTCTGGGGTTTTGTGGTGGTGTGTGATG
TTGAACAATATGAGTAATCTAACCCCGATAATAGAAAGCGGGGAGTGATA
TTGATTCATCCTCGGTAGGTCTTTTTGCCCAAAACAGCACCCTTCAAGTC
ACGGACGTACGCCCTCTTCATTTTTGCACTCACTTATCAGTGTACACTCG
CTTGCTCACGCCCGCTATATTTCAGTGTATCAGTAACACACCCGATAGGC
CACACTTGAAGACTACCTGGCAATTCTATTTTCTGACGTCGATTGAATGA
TACCAAGTTTTACGGGCTCATCGGTTGATGGGACACCGAAGGTGTTGACT
CCATAGTATCGTCGTTGCCCAGCGGCTGGGCAGGTGGTCCACATACGTTA
TATATTCCTCCACCAATTCTACTCTAGATACGACACGGACGGAGGGTTTT
CATACCGAGAGCTACTATTGTTTTGTGCGAGGAACGCGGGGAAGTGGAGT
GAAGCTCAGCCTCACGTAGCCGAGAGGTTTCGGCGAGACCTACGAAGACA
GGTGACGACCATTTATGCTAGACTACGAATCGAGGTTTGTGCAAGTCATA
GCACCACTACAAACTTGAGCCTTCGTGAACCACGTTATGGTTGGTCACAA
TAACTATCACTTGAAGCCTACTTTCACGTTCGTTTACCCGCGAATTTAGG
ACTTTCTTCCCCACTTCGGATCAAATCCCGTGATAACAGGTGCAAACGTA
AGCCCACACAGATGTACCCACCATGATACATTTGATTGCACTCTGAAGGT
CAGGGTTGGCCTCGTGAAGACATAGCCCCCCAAATCAGCTTAATCATGTG
TAAGTGTTCAACGACGATACTACTGTTTTCCCGTTGTGAATAATTGAATG
GTGTTCTCCAGTCGTATCACTATTAACAGGATCCAACCGCGGCAGGGGTC
CAAGATTACTAAGTAAAACATGCGCGAGAAGTAGGTACTTGAACAGGAAC
GTATGGACACACCAAGAGAGCAGAGTGTATCATTTTTCTTCAACCATAGA
TAATGTACAGATACAAGGCGGCACCATCCTCAGATCCTCCAATCAAAGCT
ATACTACTGCGTTGCGCGTAAGTAGGAATTTCTCAGAGGGAGTTCCTACT
TAATTGCGGGTATATAGCACCATCCCATCAAAACGTGCAAGGCTTTTCAC
ATGGTCGGTACTTTCTCACCTAACCGATCGCAGACCGAGCAGAATAATCC
CATGACCAACTCGCGAACCATCCGCGAAAGTAATAATCTCACAATATCGA
TTGGGAACCAGGAAAGTTCTTACATGACAAGCCTCGAACCGGCCGGAAAA
TGTAGAATTTTCACAAGACGGATTGCGAACCGAGCAAAAGTTCGCATGAA
TAACCGCGAGACGACCAGAAAATGTAAAATCTTACGTGACCAACTGCGAA
CTTGTTCGCGAATCTGGTTATGTGACAACGACCCGTGTAATGCCAGTCAT
TTGAAAAGCATTGAAAGCATTAAAGCACCATTGCTCCCTCACATTTGCCA
TTCGCGGCCGAACAATAACCTATGTTCATCAAACCAAGACTGCGCCTCAT
CGGTTAGGACTGAGATCCTTGCCCGGGAGGAACCGGAAGCTGCTGATGGA
TGATCTTGACTCTGATCCCTGGTTTCAAACTGAACCCGATTTCGCCCCAC
GGTAAGGTTCACCTTTGGATCGGCCCGAGCAGTGAATGCCACATTCAACC
TTACATATTGTGGTTGGCACGTACATAGTGTTCGTTACCACGAAACCTGG
ATGTATCAATAAAAAAAGCGGAAAAGAATTGACGCCTCACCGTATGTCGG
GAGAGCACATAGCACAGATTTAAGTTAGACAGGCAGGATAAAGGCATTGA
GCAGAGAGTGAATTAGCACGTGCCTTGGCCGACACTATATGGCATTTTAA
ATGTGTCGTTAAACCAAATCCGTGATCTCTGTGTCGTTCACAGAATAATC
AAAAGGAACTCGTACGAGGTAGTACACTTTTGGTGAAGTTGTGGTGATTG
CATATACCAGGAAGCAGCCTCGACGGTAACTCAGCATCCATGCTTTCTTG
CCTCCTTCGTTACAACAGACTAATAAAGACTATAGTAGGGGCGAACGATG
ACGCAGAATTGGTTCTAAGAACAGTCCGCGAACGGTTCATAAAAGTGGAT
AGCGCCAAGAGCGGATTTGTGACGACAGAGCAGTTCAGGCGTGTCGTGGG
GACTTTGTGTGGCACACGAGAGCTGATGGTGAGTGCACTTATAGCCTTCG
AAGGATACGGCGCTAACCATAAAGTCGGCGTGGAATAATTGTAGCTTTTT
ATATTGATAACGCGCAGAAGTTGGCCAACAGAGGCTGACTATTGAGCGCT
GCTCTTCATCTTTATGACAGGATGGTGCGGTGGATCGTCTTTCGGATCTA
TTGGACGACGAGGGAGACGGAAGGGTCAATTACCGATCCTTCCTGAAAAT
GGTACTGAACTACATGGGCGATTGGACAAAACGACTGCCCCAGGTAATCA
GCATGAATTGCCTTCACAGAAGATTGTGTCCCCAGGTCAGTTGGGGCGGA
GAAGGGGCAAGTTGGATCTTTGTCACTTTATACGTTGCTAGTCTAACCTT
GGAACTTGTGGCTCTCTGAGACTAAGTACTCGAACCTACCGTATTCCTGA
ATTTTAAACGAAAACGGCAATCATTTGTCTAGACAATGCTCAACGTACGG
GCGCGTGTATCGTGGTTGGAATTACTCTACACCTGTTGAGCCCCGACGAT
TTCCGCCGTGTTTATGAAGCACATCTACTAACGTCTGGCCTTTCGCATTG
TTTCGACCTGGGTGCAGTACATCTCCACATGATATTCTGCAGTGATTCGA
CTTGGGTTTAGCGTTCCTTGCTACCGCAGACGAACGCGAGGTAACAGCAG
GCAGTGGATCGTGTTCCCTGCTCTTACTACGGAATCGCAGAACTTGCCAA
ACAGCCTATTAATGCCTCGCAACATCGTTCAAAATGGTGTCGATGACTAA
TGCTGCTGATCCTCGACCTCCCTCTATATTGGAAGGTTGCGTCCGAGCTG
TCACTTTCCTTGGAGCACAACCAATACGGTCGGCTCTCTTGCTTGGAGAA
CCTCGCTCGTAGACTGGAGATTGCTGATGTGAATGAAGTGGGGAGGCTAT
CTCCGACCGCGCTCGGCAGGTATTTGGTACACCCGAAAAACATACTTTCT
TCGTAATACATCCGACTCGTCGCGGAACCCGTAATCAGGACTGATCGTTG
TCTATTTTCGCTGTTCCGAAAATTAATTTCTCCTTCATTTCGCCATCAAT
TTCCAACAGCACATGAAAAAGTATATTGTACTGGCGTACATTCACGGGTA
CATTGTGCCCCCTTGAGTTACACAAACGATGGATGTCCACGTGATGATCA
TGTAGCACAGTGCTACGAAGAATGTGACTGCTCAAGATCATAATATATTC
CTAAACTACCCAGTGATATCTCATGACTCCCATGCTAAGTGGCTTCAACG
GGAGCGTGGATCGAGACCTCTAGTTATTTCTCCCTCTGTCTGTATCCTTG
CCAAAGGTGTTTGCGGGGCGTTGGCTTGACTCTATCACAAGAAAACCTAC
GAGAAATGGCAATTGTGATGGACGCGGAGGGTGATGGCCGCATCCCGGTG
GCTCCCGTGCTGCAATTTCTCCAAGACGAGGCGGGAGATTTTGCTCGGGG
AAGACGGCGTGGCAAAACTCAACGACAGGTTGAGAAATATGCCGAGCTCT
GCTGATTGCTTCATAATCATGCCGTGGGTGATTTGGAAAGGAAGTATGTT
GTTCCGGTATACCTCTGCACGATGCCGATAAGTTACTTTTCCAGTTGATA
AGTAGCTTTATCGAGGGTAGCTTCCTGGGGTAGGAGCAAGACTGGCGGTG
GTTTCTCTTCGCCGATTTTGGAAAAATTAGTACATTGTGACCTAGTAGTT
TGTCATATAATACTTATACTTCCACCACCGAGTCACATTGCAATATCCGG
TGGAGTTCGACGATAGGCCGGGAGATTATGGAATAGTATGTGCATGGAGA
TGTCGATCACCAAAAGCCCACACCTTGGAGATGGGATACCACATTCTAAC
CAGCCATCACTATGCGTGGGCTACGGCGATACTTTTATCGGTTAGGACTA
ACTTGGTCGGTGCGACAATCACAACAATGCCTTCCAGGGATACACCCTAT
GACCGTTTTCTCTATGCCACCTATTTTCTCTTATCCTAACACCAGGGTCC
CAGAATCGTATCCGAGTTTCGCCAAGCTGTTATATCGTTAGCAACACTAG
CGGGACTAGAGCATTTCGACCCGGGTGATGAACACGGATACGGAGAGAAG
GTGCAGGGAATCTCGTGGCGCGCATGCCTCCGCAGGGTGTTTGATAGGTG
AGGGCCGGCATAGAGCACACTGTTCCAGGTCTACCGAAGTCTAGTTATGC
TTCTAGTAGCATGCATGGTGGAAGGTGGGCAATGACCCCGGTAGCTGATC
ACCCCATAGGCCGGAGGGACCGTTAAGCACACTGTGGTGATATTGCCGTC
CGCACGGTAGATGGGTGCTTTCTAAGGGCATTCACATTTCATCGAGCTAT
CATCTAGCATCTTGACAATACTCTGAAAACTATACCAAATCACGAGTCCC
TCTTTTTCGTCATATTCACTCCGGATATTGCTCATGCGTCGTGCAGCTGC
ATTGTGGTGCAAGCGCACGACCATGCCAGTCTGCACTCGCATGATCCCGC
TGCCAATTGAGTTGTCCAACCAAACGTTCCACTACGTCACCATCAAGTCA
GTAGAGAATGTACCGGGTGAGGGTTTCCAATAAAGAAAATGCATATGTTT
CAGGAAAGACACGCGACCACAATGAGGTGCTCATGCCACCAAACTGCAGC
ACACACTTACCATCGTGCTTGAGGAAACATCACAGGATAACTGCGCAATG
TGTACGGTTCTATTTTTCTTCACTGACAGGCGACTGGATCTTGACGGTGA
CGGGTATCTCACTGAGGCCGACATAGCATCATGCTTTCCCGAAATTGGCA
TTTCCGTGTCTCCCGCTGACGAACGCGAGGCCGCTCGAATAGTGCTGTAT
GCCATGGACTCGCGAAATCGTAGGTTGGGTCAAGCTACCTTCAAGGTGAT
TGTTTTTAAGGTCCGACTCATGATTTCGCAACAACGACTCGCCCTGAATT
AAGAATGCACCTGTAACGTCCAAACCTCATTTTAGGACCTCCAGAGTGGT
CATCGATGCGATAAAAGTGCAGCACCGACAGAGCCTGGCAAAACCACACG
GCAGCAACGTTTTTCACCGTAGATTTGTGGACTAATATGTGGAGCATTTC
AGGAATACCTGTAGATGCCCCGTCCACACAAAACGTCAAGTACGATCCAT
GACGCTTCAGGTCCTCGTACAAACCAGAGGTCCTCAATCAATCATCTGCT
AGCCTGCCGCCACCAGGCCATGGGGTCGAGTACTCATCACCCGGTGTTGG
AATTTCGGTGAGGAAATATACTATCTGGAATCGCTAAATCACCACGACCA
TACGTTCTGGAAATTCCGTGCCCTTCTTGTGGTTGTGTTGCTGCAATGTC
GACAAACACCACGCAGGACTTTGCGCAATTCGTGTGCCTGGACTCATCAA
CTGCTACCGATCGTAGGACGCGTTCAGCGACCGTGTACAATGGTCGTACG
TTTGACAGGCTTAAACCTTCAAATCAGCAGGTGATAATG back to topCoding sequence (CDS) from alignment at H-paniculata_contig192:14480..20968- >mRNA_H-paniculata_contig192.4832.1 ID=mRNA_H-paniculata_contig192.4832.1|Name=mRNA_H-paniculata_contig192.4832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig192:14480..20968- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTACTGAACTACATGGGCGATTGGACAAAACGACTGCCCCAGATGGT
ACTGAACTACATGGGCGATTGGACAAAACGACTGCCCCAGGTTGCGTCCG
AGCTGTCACTTTCCTTGGAGCACAACCAATACGGTCGGCTCTCTTGCTTG
GAGAACCTCGCTCGTAGACTGGAGATTGCTGATGTGAATGAAGTGGGGAG
GCTATCTCCGACCGCGCTCGGCAGGTTGCGTCCGAGCTGTCACTTTCCTT
GGAGCACAACCAATACGGTCGGCTCTCTTGCTTGGAGAACCTCGCTCGTA
GACTGGAGATTGCTGATGTGAATGAAGTGGGGAGGCTATCTCCGACCGCG
CTCGGCAGGTGTTTGCGGGGCGTTGGCTTGACTCTATCACAAGAAAACCT
ACGAGAAATGGCAATTGTGATGGACGCGGAGGGTGATGGCCGCATCCCGG
TGGCTCCCGTGCTGCAATTTCTCCAAGACGAGGCGGGAGATTTTGCTCGG
GGAAGACGGCGTGGCAAAACTCAACGACAGGTTGAGAAATATGCCGAGCT
CTGCTGAGTGTTTGCGGGGCGTTGGCTTGACTCTATCACAAGAAAACCTA
CGAGAAATGGCAATTGTGATGGACGCGGAGGGTGATGGCCGCATCCCGGT
GGCTCCCGTGCTGCAATTTCTCCAAGACGAGGCGGGAGATTTTGCTCGGG
GAAGACGGCGTGGCAAAACTCAACGACAGGTTGAGAAATATGCCGAGCTC
TGCTGA back to top
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