mRNA_H-paniculata_contig192.4831.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig192.4831.1
Unique NamemRNA_H-paniculata_contig192.4831.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig192.4831.1 vs. uniprot
Match: A0A6H5JP00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP00_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.700e-23
Identity = 50/80 (62.50%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:  118 ISWRACLRRVFDRRLDLDGDGYLTEADIASCFPEIGISVSPADEREAARIVLYAMDSRNRRLGQATFKDFAQFVCLDSST 357
            I W  CLRRVFDRRLD+DGDG+LTE D+A+C PEIG+ V+    R+AAR +L AMD R R LGQATFKDF +FV  + S+
Sbjct:  343 IPWSVCLRRVFDRRLDVDGDGFLTEGDLAACLPEIGVHVTG---RDAARTLLSAMDFRQRGLGQATFKDFVEFVGTNGSS 419
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BLAST of mRNA_H-paniculata_contig192.4831.1 vs. uniprot
Match: D7G7I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I0_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.950e-22
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:  118 ISWRACLRRVFDRRLDLDGDGYLTEADIASCFPEIGISVSPADEREAARIVLYAMDSRNRRLGQATFKDFAQFVCLDSST 357
            I W  CLRRVFDR LD+DGDG+LTE D+A+C PEIG+ V+    R+AAR +L AMDSR R LGQATFKDF +F+  + S+
Sbjct: 1712 IPWSVCLRRVFDRWLDVDGDGFLTEGDLAACLPEIGVYVTG---RDAARTLLSAMDSRQRGLGQATFKDFVEFMGTNGSS 1788
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig192.4831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP00_9PHAE2.700e-2362.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7I0_ECTSI1.950e-2261.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig192contigH-paniculata_contig192:14480..15976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue1.8e-19
Seed eggNOG ortholog2880.D7G7I0
KEGG koko:K02183,ko:K14684,ko:K15100,ko:K16466
KEGG TC1.I.1,2.A.29.23,2.A.29.7
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko02000,ko03019,ko03036,ko04131,ko04147
Exons3
Model size444
Cds size444
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig192.4831.1prot_H-paniculata_contig192.4831.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig192 14480..15976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929467.7262335-CDS-H-paniculata_contig192:14479..146021622929467.7262335-CDS-H-paniculata_contig192:14479..14602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig192 14480..14602 -
1691480874.4046261-CDS-H-paniculata_contig192:14479..146021691480874.4046261-CDS-H-paniculata_contig192:14479..14602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig192 14480..14602 -
1622929467.7356246-CDS-H-paniculata_contig192:15073..152391622929467.7356246-CDS-H-paniculata_contig192:15073..15239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig192 15074..15239 -
1691480874.4144745-CDS-H-paniculata_contig192:15073..152391691480874.4144745-CDS-H-paniculata_contig192:15073..15239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig192 15074..15239 -
1622929467.7464125-CDS-H-paniculata_contig192:15821..159761622929467.7464125-CDS-H-paniculata_contig192:15821..15976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig192 15822..15976 -
1691480874.42285-CDS-H-paniculata_contig192:15821..159761691480874.42285-CDS-H-paniculata_contig192:15821..15976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig192 15822..15976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig192.4831.1

>prot_H-paniculata_contig192.4831.1 ID=prot_H-paniculata_contig192.4831.1|Name=mRNA_H-paniculata_contig192.4831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
QGPRIVSEFRQAVISLATLAGLEHFDPGDEHGYGEKVQGISWRACLRRVF
DRRLDLDGDGYLTEADIASCFPEIGISVSPADEREAARIVLYAMDSRNRR
LGQATFKDFAQFVCLDSSTATDRRTRSATVYNGRTFDRLKPSNQQVIM
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mRNA from alignment at H-paniculata_contig192:14480..15976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig192.4831.1 ID=mRNA_H-paniculata_contig192.4831.1|Name=mRNA_H-paniculata_contig192.4831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1497bp|location=Sequence derived from alignment at H-paniculata_contig192:14480..15976- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGTCCCAGAATCGTATCCGAGTTTCGCCAAGCTGTTATATCGTTAGC
AACACTAGCGGGACTAGAGCATTTCGACCCGGGTGATGAACACGGATACG
GAGAGAAGGTGCAGGGAATCTCGTGGCGCGCATGCCTCCGCAGGGTGTTT
GATAGGTGAGGGCCGGCATAGAGCACACTGTTCCAGGTCTACCGAAGTCT
AGTTATGCTTCTAGTAGCATGCATGGTGGAAGGTGGGCAATGACCCCGGT
AGCTGATCACCCCATAGGCCGGAGGGACCGTTAAGCACACTGTGGTGATA
TTGCCGTCCGCACGGTAGATGGGTGCTTTCTAAGGGCATTCACATTTCAT
CGAGCTATCATCTAGCATCTTGACAATACTCTGAAAACTATACCAAATCA
CGAGTCCCTCTTTTTCGTCATATTCACTCCGGATATTGCTCATGCGTCGT
GCAGCTGCATTGTGGTGCAAGCGCACGACCATGCCAGTCTGCACTCGCAT
GATCCCGCTGCCAATTGAGTTGTCCAACCAAACGTTCCACTACGTCACCA
TCAAGTCAGTAGAGAATGTACCGGGTGAGGGTTTCCAATAAAGAAAATGC
ATATGTTTCAGGAAAGACACGCGACCACAATGAGGTGCTCATGCCACCAA
ACTGCAGCACACACTTACCATCGTGCTTGAGGAAACATCACAGGATAACT
GCGCAATGTGTACGGTTCTATTTTTCTTCACTGACAGGCGACTGGATCTT
GACGGTGACGGGTATCTCACTGAGGCCGACATAGCATCATGCTTTCCCGA
AATTGGCATTTCCGTGTCTCCCGCTGACGAACGCGAGGCCGCTCGAATAG
TGCTGTATGCCATGGACTCGCGAAATCGTAGGTTGGGTCAAGCTACCTTC
AAGGTGATTGTTTTTAAGGTCCGACTCATGATTTCGCAACAACGACTCGC
CCTGAATTAAGAATGCACCTGTAACGTCCAAACCTCATTTTAGGACCTCC
AGAGTGGTCATCGATGCGATAAAAGTGCAGCACCGACAGAGCCTGGCAAA
ACCACACGGCAGCAACGTTTTTCACCGTAGATTTGTGGACTAATATGTGG
AGCATTTCAGGAATACCTGTAGATGCCCCGTCCACACAAAACGTCAAGTA
CGATCCATGACGCTTCAGGTCCTCGTACAAACCAGAGGTCCTCAATCAAT
CATCTGCTAGCCTGCCGCCACCAGGCCATGGGGTCGAGTACTCATCACCC
GGTGTTGGAATTTCGGTGAGGAAATATACTATCTGGAATCGCTAAATCAC
CACGACCATACGTTCTGGAAATTCCGTGCCCTTCTTGTGGTTGTGTTGCT
GCAATGTCGACAAACACCACGCAGGACTTTGCGCAATTCGTGTGCCTGGA
CTCATCAACTGCTACCGATCGTAGGACGCGTTCAGCGACCGTGTACAATG
GTCGTACGTTTGACAGGCTTAAACCTTCAAATCAGCAGGTGATAATG
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Coding sequence (CDS) from alignment at H-paniculata_contig192:14480..15976-

>mRNA_H-paniculata_contig192.4831.1 ID=mRNA_H-paniculata_contig192.4831.1|Name=mRNA_H-paniculata_contig192.4831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig192:14480..15976- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGTCCCAGAATCGTATCCGAGTTTCGCCAAGCTGTTATATCGTTAGC
AACACTAGCGGGACTAGAGCATTTCGACCCGGGTGATGAACACGGATACG
GAGAGAAGGTGCAGGGAATCTCGTGGCGCGCATGCCTCCGCAGGGTGTTT
GATAGCAGGGTCCCAGAATCGTATCCGAGTTTCGCCAAGCTGTTATATCG
TTAGCAACACTAGCGGGACTAGAGCATTTCGACCCGGGTGATGAACACGG
ATACGGAGAGAAGGTGCAGGGAATCTCGTGGCGCGCATGCCTCCGCAGGG
TGTTTGATAGGCGACTGGATCTTGACGGTGACGGGTATCTCACTGAGGCC
GACATAGCATCATGCTTTCCCGAAATTGGCATTTCCGTGTCTCCCGCTGA
CGAACGCGAGGCCGCTCGAATAGTGCTGTATGCCATGGACTCGCGAAATC
GTAGGTTGGGTCAAGCTACCTTCAAGGCGACTGGATCTTGACGGTGACGG
GTATCTCACTGAGGCCGACATAGCATCATGCTTTCCCGAAATTGGCATTT
CCGTGTCTCCCGCTGACGAACGCGAGGCCGCTCGAATAGTGCTGTATGCC
ATGGACTCGCGAAATCGTAGGTTGGGTCAAGCTACCTTCAAGGACTTTGC
GCAATTCGTGTGCCTGGACTCATCAACTGCTACCGATCGTAGGACGCGTT
CAGCGACCGTGTACAATGGTCGTACGTTTGACAGGCTTAAACCTTCAAAT
CAGCAGGTGATAATGGACTTTGCGCAATTCGTGTGCCTGGACTCATCAAC
TGCTACCGATCGTAGGACGCGTTCAGCGACCGTGTACAATGGTCGTACGT
TTGACAGGCTTAAACCTTCAAATCAGCAGGTGATAATG
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