mRNA_H-paniculata_contig192.4834.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig192.4834.1
Unique NamemRNA_H-paniculata_contig192.4834.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig192.4834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig192contigH-paniculata_contig192:30495..30919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size230
Cds size189
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig192.4834.1prot_H-paniculata_contig192.4834.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig192 30535..30919 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929467.430513-UTR-H-paniculata_contig192:30494..305341622929467.430513-UTR-H-paniculata_contig192:30494..30534Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig192 30495..30534 -
1691480874.2325811-UTR-H-paniculata_contig192:30494..305341691480874.2325811-UTR-H-paniculata_contig192:30494..30534Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig192 30495..30534 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929467.4474585-CDS-H-paniculata_contig192:30534..305431622929467.4474585-CDS-H-paniculata_contig192:30534..30543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig192 30535..30543 -
1691480874.243809-CDS-H-paniculata_contig192:30534..305431691480874.243809-CDS-H-paniculata_contig192:30534..30543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig192 30535..30543 -
1622929467.4729102-CDS-H-paniculata_contig192:30739..309191622929467.4729102-CDS-H-paniculata_contig192:30739..30919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig192 30740..30919 -
1691480874.2541053-CDS-H-paniculata_contig192:30739..309191691480874.2541053-CDS-H-paniculata_contig192:30739..30919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig192 30740..30919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig192.4834.1

>prot_H-paniculata_contig192.4834.1 ID=prot_H-paniculata_contig192.4834.1|Name=mRNA_H-paniculata_contig192.4834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
VRSPLRVGLKAPDTAGEWQTGRWYRATEAKVNTSLHSGSQNPIHGISIAS
TKGTEAGGVEIP*
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mRNA from alignment at H-paniculata_contig192:30495..30919-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig192.4834.1 ID=mRNA_H-paniculata_contig192.4834.1|Name=mRNA_H-paniculata_contig192.4834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=425bp|location=Sequence derived from alignment at H-paniculata_contig192:30495..30919- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGATCGCCTCTCCGAGTTGGCCTCAAGGCTCCGGACACGGCTGGCGA
GTGGCAGACAGGGAGATGGTACCGAGCGACTGAGGCAAAGGTGAACACGT
CGCTTCATTCCGGTTCCCAAAACCCAATACATGGGATCTCCATCGCGTCT
ACAAAAGGAACCGAAGCTGGCGGTGTCGAGGTGAAATCGTGAAATTAAGC
TGTCCTAGTTGTTGCCAATCGCGCATACTGCGTTCTAGTAGGGAACGCCT
TAGCCGACGGGGATTTTACACTTGTTTATGTATTCATGTAACGCGAATAC
GAAGCTGGTCGGATGATCCCGCACTGTTTTCCGCGCCCTTTTTATTTTTA
TTCCTTTGTGTTGTTGTGGCTACAAGATTCCTTGATTTCGATTTGGACAA
CGATGGTACCGTGGGCAGACGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig192:30495..30919-

>mRNA_H-paniculata_contig192.4834.1 ID=mRNA_H-paniculata_contig192.4834.1|Name=mRNA_H-paniculata_contig192.4834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig192:30495..30919- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGATCGCCTCTCCGAGTTGGCCTCAAGGCTCCGGACACGGCTGGCGA
GTGGCAGACAGGGAGATGGTACCGAGCGACTGAGGCAAAGGTGAACACGT
CGCTTCATTCCGGTTCCCAAAACCCAATACATGGGATCTCCATCGCGTCT
ACAAAAGGAACCGAAGCTGGCGGTGTCGAGGTTCGATCGCCTCTCCGAGT
TGGCCTCAAGGCTCCGGACACGGCTGGCGAGTGGCAGACAGGGAGATGGT
ACCGAGCGACTGAGGCAAAGGTGAACACGTCGCTTCATTCCGGTTCCCAA
AACCCAATACATGGGATCTCCATCGCGTCTACAAAAGGAACCGAAGCTGG
CGGTGTCGAGATTCCTTGAATTCCTTGA
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