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Homology
BLAST of mRNA_H-paniculata_contig192.4830.1 vs. uniprot
Match: A0A6H5JP00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP00_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.880e-13 Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = 1
Query: 55 DLEEALARIDAHARGKLLPWKIKAALGSLGLPVNKLARSTWIGLTDSLDQDAYGHVFYRDFLNNLLLPKRRVEALPASSSGQPTPRVFTRGHP 333
DL A+AR+D H G+L WKIKAAL + GL V + ++W+ LT SLDQDAYGH+FY DF++ LL+P + L SS P R + HP
Sbjct: 482 DLRLAMARLDPHGSGRLPLWKIKAALQAFGLRVRNVPHASWLDLTGSLDQDAYGHLFYSDFVD-LLMPSEQSPYL--SSPDPPLDRRRSNAHP 571
BLAST of mRNA_H-paniculata_contig192.4830.1 vs. uniprot
Match: D7G7I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I0_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 2.030e-11 Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 55 DLEEALARIDAHARGKLLPWKIKAALGSLGLPVNKLARSTWIGLTDSLDQDAYGHVFYRDFLNNLLLPKRRVEALPASSSGQPTPRVFTRGH 330
DL A+AR+D H G+L KIKAAL GL V + ++W+ LT SLDQDAYGH+FY DF++ LL+P + L SS P+ R + H
Sbjct: 1851 DLRRAMARLDPHGSGRLPLGKIKAALQGFGLRVGNVPHASWLDLTGSLDQDAYGHLFYSDFVD-LLMPSEQSPYL--SSPDPPSDRRKSNAH 1939
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 79.3 |
| Seed ortholog evalue | 3.3e-12 |
| Seed eggNOG ortholog | 2880.D7G7I0 |
| KEGG ko | ko:K02183,ko:K14684,ko:K15100,ko:K16466 |
| KEGG TC | 1.I.1,2.A.29.23,2.A.29.7 |
| KEGG Pathway | ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | Ca2 -binding protein (EF-Hand superfamily |
| EggNOG OGs | COG5126@1,KOG0027@2759 |
| COG Functional cat. | DTZ |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01009,ko02000,ko03019,ko03036,ko04131,ko04147 |
| Exons | 7 |
| Model size | 1472 |
| Cds size | 894 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig192.4830.1 >prot_H-paniculata_contig192.4830.1 ID=prot_H-paniculata_contig192.4830.1|Name=mRNA_H-paniculata_contig192.4830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=298bp
MDLEEALARIDAHARGKLLPWKIKAALGSLGLPVNKLARSTWIGLTDSLD
QDAYGHVFYRDFLNNLLLPKRRVEALPASSSGQPTPRVFTRGHPSSARPW
YGAGRSLSPTATTTVRTQTTNAHRPSTAPPSSLGYHHHGHWVSPRTVSPH
GRRKQSRGSGGFERNIPEPNRHSRKPSQSDNPGGKFKSIQRSMRAGISRT
NGGGAGDSGTRMTEEVGWKRTPHGKDVQRDDVTDTGVTIHYKSDRFIESL
EEALRDVLEDKHGDAVEGAQALRFALNQQDLTRRQESWWRWRRPEHH* back to topmRNA from alignment at H-paniculata_contig192:9474..13544- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig192.4830.1 ID=mRNA_H-paniculata_contig192.4830.1|Name=mRNA_H-paniculata_contig192.4830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4071bp|location=Sequence derived from alignment at H-paniculata_contig192:9474..13544- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAAGGCTAGAAATGTGTTAGGCTTGGTTGCAGGAGAGAAAGATGTGTA
CATGGACTTGGAGGAAGCCTTAGCAAGGTGCGAATACGTGACCACTGATA
GTTGATACGGTTTCGTAATATACAGAGTGGTTCTTGAATACAGATCTCTT
CCTTGTACATTTGGTCGATGCAACGTAGTAGTGCGAACAGGCCTCGCTTC
AGTAAAGAATTTCGCCCAAGAATTTTCTCTGATTGACGGCATGCACTAAA
CCCTCGTCCTTGCTCACTCTCAAGCCGGTATTCTGCAAAAATTTACATAA
TGGCACACGTTGACATATCACGTTTGCGAGGAGGCGGCTTCCTGCCGTTG
TATCAACCCACATCCGACGATAATTCTTCGCGCATGTTCACGCGACCGCC
GGATGCTTCTCCCTCGAAAGTCACCCCCCCCCGCGCTTACTGTTAGAAGG
TGTGAGAGGTTAGAGAGAGCTACAACATAGTGGCAACGAGACACTGATTG
GACCTGTATGCGTCGAGAGTAGGTCACTATTAGGGTTAGGGCTGGGTATC
AACGACTTGACTGCCATACTTACTTCATATTATCATATACCAGCGTACTC
AGTTTCCGTTGTTCTTTCATGTCTACTACACCGATTGGAGTAGGATTGAT
GCTCATGCTAGAGGAAAATTACTTCCATGGAAAATAAAGGCGGCTCTTGG
ATCGCTAGGACTTCCCGTAAACAAGCTGGCAAGGAGCACATGGATCGGTC
TCACCGACAGGTTTGTGAAAGCTCTCGCTGGTAGGATACCCGCAGTCACT
CATATCCTAGACTCCAGAGGACCGTCTATTTGACGTGGCAACACGATATC
GACCTAGTTCCATTCCAGCGGTGTATGCCGAGATGTGGGATTTATGGCGA
CGGGCATGCAAGGCGTGATGTTTTACACCCTGAGCCCTTCCTCGTTTCGA
GACCTTTGCCGGGTAATCATTTGGTACGTCCCCCTCTCGCCTCGCCCAAA
CCTCGTGTGAATGTTCAACACCACTCACGACAGCTTGGACCAAGATGCGT
ATGGTCACGTCTTCTATCGAGACTTCTTGAATAACCTTTTACTCCCCAAG
AGGAGAGTCGAAGCGCTGCCCGCGAGTTCATCAGGGCAACCAACACCGAG
AGTATTCACACGTGGTCATCCATCCTCAGCTAGGCCGTGGTATGGAGCAG
GGAGGTCATTATCTCCAACGGCCACTACCACCGTGCGGACACAGACCACA
AACGCACACCGGCCCTCTACAGCTCCGCCATCCAGTCTCGGGTATCATCA
TCACGGTCATTGGGTGTCTCCACGCACCGTGTCACCACATGGAAGAAGAA
AACAATCTCGGGGCAGTGGGGGATTCGAACGCAACATCCCTGAGCCGAAC
CGACATTCGCGAAAGCCTTCACAGAGCGACAACCCTGGTGGGAAGTTCAA
AAGTATTCAAAGGAGCATGAGGGCGGGCATATCGCGCACAAACGGTGGCG
GCGCAGGTGACAGCGGGACCCGGATGACCGAAGAGGTTGGGTGGAAGAGA
ACTCCACACGGAAAAGATGTCCAGCGGGACGATGTCACAGACACTGGCGT
CACGATACACTACAAAAGTGACCGATTTATTGAGTCCCTAGAAGAAGCGC
TTCGCGATGTCTTGGAGGACAAGCACGGCGACGCTGTAGAGGGAGCTCAG
GCCCTTCGATTCGCTCTCAACCAGCAAGATCTGACCAGGAGGCAAGAATC
ATGTTTTGCATCACAAGACCTCCTTTTACGGTCGTTTGTTTGACTCTGAG
CTGAAAATTGGCGGCCCGACGAAGAGCAGTCTACCAAACACTCTGTCAAG
TGTCCGGCCTAGTCAGCTCTTCTTGCCGTGTGACTCTTGGCTTAGGGTTA
TTGGATACTTTCGGGGGAACAGGAGTTCGGCCCAGCGTTTTGCTCAAAAT
TTGATGGCCAGGAAAAACTCCTGGGGCGAAACGTTCGCAAACGCTCTCAA
TGTTCTCAGGATTTTATTCGCGGCGGAACCGAAAACGATTTATCGGTAAA
CATTTGTGAACAGGTATAAGAACAATTATAGTGCCGGTGACCAGTGGTAG
GATGTGACCAGGGCTGATTGCATGTGACCCGGATTATATTATAAGTTTTC
CCACCACTGTTGCCCCACGTCGCGCATGTCCACAGGGGAACGCTCAACTT
GAGAGAATTCAGGGTGGCGTTGGAGACGGCCGGAGCACCATTGAGCTCAG
AACAGGTGAACCAAGAACAATACGTGCGTTATCAACTCACCACCTATTCC
TGCGTCTCTACCACGTAACCTTCAAAAATGCCTCTCCTTCGATGTTAGTA
CCCATCCTTTGTAGAGTTCGACACAATTCATCGTTTGGAATAAACAGGTA
GATTTGGTGTGGTTTTTCCTGACCATACCGCCTCTCCCCCCACTATCGTT
GGGAAAGAGACATACGATACCAGGGAAAGCAAGCTGGCACGGTTCTAAAT
AAATTGCGTGGATCCGCATTCAGGTCTCGACTTTATTTCGCCGCTTCACA
CGCAAGGGGTAGCGACAATTTGGACTACGATGGGGCGCCGATGTTGTGAT
AGGGTAAGTGTCCGTACCGTTGGTAATATGAATAGCTGCCGCATTGACTG
AGTTAGAGACGACCACTAGTAAGAAATCTTTCCTTGGTGTTACCTGCGTT
TTTCGATGTGTGTGTGCTACTGCTTTATATCTCAAGCGTCCTACCGACAT
TCACGGCGAGTACCGACCGCCATATATCTCCCCAATATTGGCAACACAGG
TAAACAAACAAGTAACAGCACAATGTTTCCGCCTGCCTACAAATCTCAGA
CAAACGACTTCAGAGGCACAGCGGATGTCGCTCGGGCTCGTAGCAAAGGT
CCTTGCGCAGAACGACAGCAACTTCAATTAGTACCTCGGGAGGCATGTCC
GATATCCGCAAGGCGGTAGACAACTAGTAGCGGAGTAAAACTGCGGATGC
ATACTTCACGACCAACACGATACTAGAGGCTTGTGCAGCCCCGAGGTAGG
TGATGAATTAAGGTCCTCTAAGGGCCGTTCTAAACGTGGGTATTGTTTCG
ACGTTTTTTTTCGTTCTCTTTCCTCTGTTTTCCAATTTCCCGACAACGAA
AGGATAGGACCCATATTGTGTAACAAAACGGAAAATGCTATAAGTATAGT
GCTGAGGAATACCATCGGCGAAAATTACAATTTTTCGTTTCTGAAACTTG
GAAACATTGTAGGGAAATATTATCTGGAAAAGAGAAAGACGTGCGGAAAA
GGGACAGAACACCAACGGCTAGAACGGTCCTAAGTCGCCAGAGAGACGTG
ATTTGATGGGTGCTGAAATGGCAGGATTGTTGCACAAACCGCAGGTTGGG
ACGATAGATACACCTGCATTCCTTGTAGCTCGAGGAGGGGGACGACTTGC
GAAAGGCCAGACGTATGGTACATGAGAGGATGCCAACGCTCGCACCGTCT
AACACGATGACTGTGGTCGACTACATTCTTCTAGCGCGTTCACACTATGA
GTAGCCAAGTGCTGCGGATACTTCGGTCAAAAATAAAATTGGCTCGCTGT
GGCGAATATGCATATATACGCACTGATAAAAGGGCCATAATCGTGAAGTG
AAGGGTACCGAGCCAATTTCGTCAGGCATCATATTTCATTCAATGAGTTT
CTCACTCATTCATGCATCCGTCCATCCATCTATCCATCACCCGTCTCATT
CAATATTTTTTCAGCAGTCGGCGCATGTTTTTCTTTCGATGCATCACTTC
ACGATCGTACCATAACCGTTTCCCTCCTCAGGTATCGGCGTCCAAGTCTT
CGGTCCCGAAAGGCTGCTGAGGCGACAGGTCATCGAGTGATGGTCGCGAG
CTACTAATGGCTCAGTCGGGTCAACTCACCGAACAATTACACATGCACGT
ACTAGTAACACGTAGTTGGGGCCCGGCAACGCCTGCACTATGAGTGGTTT
GTCATCGTACCCATCTGTGGTAGAAGCAGGAGGTACGTTGGTCAGCGAAG
AGTGTTCAAGGAGGTCTTATT back to topCoding sequence (CDS) from alignment at H-paniculata_contig192:9474..13544- >mRNA_H-paniculata_contig192.4830.1 ID=mRNA_H-paniculata_contig192.4830.1|Name=mRNA_H-paniculata_contig192.4830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1788bp|location=Sequence derived from alignment at H-paniculata_contig192:9474..13544- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTTGGAGGAAGCCTTAGCAAGATGGACTTGGAGGAAGCCTTAGCA
AGGATTGATGCTCATGCTAGAGGAAAATTACTTCCATGGAAAATAAAGGC
GGCTCTTGGATCGCTAGGACTTCCCGTAAACAAGCTGGCAAGGAGCACAT
GGATCGGTCTCACCGACAGGATTGATGCTCATGCTAGAGGAAAATTACTT
CCATGGAAAATAAAGGCGGCTCTTGGATCGCTAGGACTTCCCGTAAACAA
GCTGGCAAGGAGCACATGGATCGGTCTCACCGACAGCTTGGACCAAGATG
CGTATGGTCACGTCTTCTATCGAGACTTCTTGAATAACCTTTTACTCCCC
AAGAGGAGAGTCGAAGCGCTGCCCGCGAGTTCATCAGGGCAACCAACACC
GAGAGTATTCACACGTGGTCATCCATCCTCAGCTAGGCCGTGGTATGGAG
CAGGGAGGTCATTATCTCCAACGGCCACTACCACCGTGCGGACACAGACC
ACAAACGCACACCGGCCCTCTACAGCTCCGCCATCCAGTCTCGGGTATCA
TCATCACGGTCATTGGGTGTCTCCACGCACCGTGTCACCACATGGAAGAA
GAAAACAATCTCGGGGCAGTGGGGGATTCGAACGCAACATCCCTGAGCCG
AACCGACATTCGCGAAAGCCTTCACAGAGCGACAACCCTGGTGGGAAGTT
CAAAAGTATTCAAAGGAGCATGAGGGCGGGCATATCGCGCACAAACGGTG
GCGGCGCAGGTGACAGCGGGACCCGGATGACCGAAGAGGTTGGGTGGAAG
AGAACTCCACACGGAAAAGATGTCCAGCGGGACGATGTCACAGACACTGG
CGTCACGATACACTACAAAAGTGACCGATTTATTGAGTCCCTAGAAGAAG
CGCTTCGCGATGTCTTGGAGGACAAGCACGGCGACGCTGTAGAGGGAGCT
CAGGCCCTTCGATTCGCTCTCAACCAGCAAGATCTGACCAGGAGGCAAGA
ATCATCTTGGACCAAGATGCGTATGGTCACGTCTTCTATCGAGACTTCTT
GAATAACCTTTTACTCCCCAAGAGGAGAGTCGAAGCGCTGCCCGCGAGTT
CATCAGGGCAACCAACACCGAGAGTATTCACACGTGGTCATCCATCCTCA
GCTAGGCCGTGGTATGGAGCAGGGAGGTCATTATCTCCAACGGCCACTAC
CACCGTGCGGACACAGACCACAAACGCACACCGGCCCTCTACAGCTCCGC
CATCCAGTCTCGGGTATCATCATCACGGTCATTGGGTGTCTCCACGCACC
GTGTCACCACATGGAAGAAGAAAACAATCTCGGGGCAGTGGGGGATTCGA
ACGCAACATCCCTGAGCCGAACCGACATTCGCGAAAGCCTTCACAGAGCG
ACAACCCTGGTGGGAAGTTCAAAAGTATTCAAAGGAGCATGAGGGCGGGC
ATATCGCGCACAAACGGTGGCGGCGCAGGTGACAGCGGGACCCGGATGAC
CGAAGAGGTTGGGTGGAAGAGAACTCCACACGGAAAAGATGTCCAGCGGG
ACGATGTCACAGACACTGGCGTCACGATACACTACAAAAGTGACCGATTT
ATTGAGTCCCTAGAAGAAGCGCTTCGCGATGTCTTGGAGGACAAGCACGG
CGACGCTGTAGAGGGAGCTCAGGCCCTTCGATTCGCTCTCAACCAGCAAG
ATCTGACCAGGAGGCAAGAATCATGGTGGCGTTGGAGACGGCCGGAGCAC
CATTGAGGTGGCGTTGGAGACGGCCGGAGCACCATTGA back to top
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