mRNA_H-paniculata_contig19192.4828.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19192.4828.1
Unique NamemRNA_H-paniculata_contig19192.4828.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19192.4828.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.100e-12
Identity = 28/63 (44.44%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    7 IHLLRSKDDAFSTFQSFVQSVVVPSGFRVERLRADQGGEYIGKAFTDYYLQIGVSLEHASTNT 195
            ++L+RSKD+A +T   F+Q +V+P+GFR+ERLR+D GGEY  + + D+   IG+  E  +  T
Sbjct:   81 VYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEFTAPAT 143          
BLAST of mRNA_H-paniculata_contig19192.4828.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.690e-11
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    7 IHLLRSKDDAFSTFQSFVQSVVVPSGFRVERLRADQGGEYIGKAFTDYYLQIGVSLE 177
            ++L+RSKD+A +T   F+Q +V+P+GFR+ERLR D GGEY  + + D+   IG+  E
Sbjct:   67 VYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRNDNGGEYSSEYYRDFCKTIGIVQE 123          
BLAST of mRNA_H-paniculata_contig19192.4828.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.920e-10
Identity = 26/63 (41.27%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    7 IHLLRSKDDAFSTFQSFVQSVVVPSGFRVERLRADQGGEYIGKAFTDYYLQIGVSLEHASTNT 195
            ++L+R+KD+A  T + F+  +V+P+GFR+ERLR+D GGEY  + +T +   IG+  E  +  T
Sbjct:  563 VYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPAT 625          
BLAST of mRNA_H-paniculata_contig19192.4828.1 vs. uniprot
Match: A0A8H7NTQ9_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NTQ9_9APHY)

HSP 1 Score: 56.2 bits (134), Expect = 1.370e-7
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 1
Query:    1 TEIHLLRSKDDAFSTFQSFVQSVVVPSGFRVERLRADQGGEYIGKAFTDYYLQIGVSLEHASTNT 195
            T + L+++KD+A S FQ FVQ   V +G ++  LR+D GGEY    FT Y    G+  E  +  T
Sbjct:  249 TTVQLMKTKDEALSHFQDFVQRAEVATGEKLNHLRSDNGGEYCSDDFTTYLKSKGIHHERTNPGT 313          
BLAST of mRNA_H-paniculata_contig19192.4828.1 vs. uniprot
Match: A0A1M2V4A3_TRAPU (Copia protein n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V4A3_TRAPU)

HSP 1 Score: 52.8 bits (125), Expect = 2.290e-6
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 1
Query:    7 IHLLRSKDDAFSTFQSFVQSVVVPSGFRVERLRADQGGEYIGKAFTDYYLQIGVSLEHASTNT 195
            +  LR K DAF  F+ ++  V   +G ++ +LRAD GGEY+G AF  +  + G+ L+  S  T
Sbjct:  584 VAFLRRKSDAFEAFKEWLARVERETGRKLAKLRADNGGEYVGNAFKAFCKERGIQLQTTSPRT 646          
BLAST of mRNA_H-paniculata_contig19192.4828.1 vs. uniprot
Match: A0A4Y9Y4W2_9AGAM (Uncharacterized protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9Y4W2_9AGAM)

HSP 1 Score: 51.6 bits (122), Expect = 5.880e-6
Identity = 23/54 (42.59%), Postives = 33/54 (61.11%), Query Frame = 1
Query:   16 LRSKDDAFSTFQSFVQSVVVPSGFRVERLRADQGGEYIGKAFTDYYLQIGVSLE 177
            +R+K D F  FQ +   V   +G  ++RLRAD GGEY+GK    Y  + G++LE
Sbjct:  603 MRAKSDVFGRFQKYRALVEKQTGRSIKRLRADNGGEYLGKEMIAYLEEAGIALE 656          
BLAST of mRNA_H-paniculata_contig19192.4828.1 vs. uniprot
Match: A0A284S1T9_ARMOS (Integrase catalytic domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284S1T9_ARMOS)

HSP 1 Score: 50.8 bits (120), Expect = 1.080e-5
Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    7 IHLLRSKDDAFSTFQSF-VQSVVVPSGFRVERLRADQGGEYIGKAFTDYYLQIGVSLEH 180
            + LL+ K DAF+ F+ F V +  V  G ++   + D+GGEY+GK FTD+    G++  H
Sbjct:  488 VSLLKHKSDAFAAFKQFKVHAENVHPGLKIVEFQEDKGGEYMGKEFTDFCANHGITRRH 546          
BLAST of mRNA_H-paniculata_contig19192.4828.1 vs. uniprot
Match: A0A4S4KEU9_9APHY (Integrase catalytic domain-containing protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4KEU9_9APHY)

HSP 1 Score: 48.9 bits (115), Expect = 5.270e-5
Identity = 22/56 (39.29%), Postives = 33/56 (58.93%), Query Frame = 1
Query:    1 TEIHLLRSKDDAFSTFQSFVQSVVVPSGFRVERLRADQGGEYIGKAFTDYYLQIGV 168
            T  HL+R+KD+ F  +QSFV  +    G  V+ L +D+GGEY+   F  Y  + G+
Sbjct:  631 TVTHLMRTKDEVFRHYQSFVALMKAHHGAAVKLLHSDRGGEYLSNEFNTYLAEQGM 686          
BLAST of mRNA_H-paniculata_contig19192.4828.1 vs. uniprot
Match: UPI001D067E91 (DDE-type integrase/transposase/recombinase n=1 Tax=Lactiplantibacillus plantarum TaxID=1590 RepID=UPI001D067E91)

HSP 1 Score: 45.8 bits (107), Expect = 7.550e-5
Identity = 20/48 (41.67%), Postives = 29/48 (60.42%), Query Frame = 1
Query:   25 KDDAFSTFQSFVQSVVVPSGFRVERLRADQGGEYIGKAFTDYYLQIGV 168
            K +AF  F  F   V   SG+R++RLR+D GGE+I   F D+  + G+
Sbjct:    1 KSEAFKFFTEFKAMVENESGYRIQRLRSDNGGEFISNEFKDFCKKNGI 48          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19192.4828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KCZ9_9PHAE6.100e-1244.44Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KFB1_9PHAE3.690e-1147.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KY84_9PHAE1.920e-1041.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A8H7NTQ9_9APHY1.370e-740.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A1M2V4A3_TRAPU2.290e-638.10Copia protein n=1 Tax=Trametes pubescens TaxID=154... [more]
A0A4Y9Y4W2_9AGAM5.880e-642.59Uncharacterized protein n=1 Tax=Dentipellis fragil... [more]
A0A284S1T9_ARMOS1.080e-538.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A4S4KEU9_9APHY5.270e-539.29Integrase catalytic domain-containing protein n=2 ... [more]
UPI001D067E917.550e-541.67DDE-type integrase/transposase/recombinase n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19192contigH-paniculata_contig19192:4575..4772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929467.0128937-CDS-H-paniculata_contig19192:4574..47721622929467.0128937-CDS-H-paniculata_contig19192:4574..4772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19192 4575..4772 +
1691480874.0384934-CDS-H-paniculata_contig19192:4574..47721691480874.0384934-CDS-H-paniculata_contig19192:4574..4772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19192 4575..4772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19192.4828.1prot_H-paniculata_contig19192.4828.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19192 4575..4772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19192.4828.1

>prot_H-paniculata_contig19192.4828.1 ID=prot_H-paniculata_contig19192.4828.1|Name=mRNA_H-paniculata_contig19192.4828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
TEIHLLRSKDDAFSTFQSFVQSVVVPSGFRVERLRADQGGEYIGKAFTDY
YLQIGVSLEHASTNT*
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mRNA from alignment at H-paniculata_contig19192:4575..4772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19192.4828.1 ID=mRNA_H-paniculata_contig19192.4828.1|Name=mRNA_H-paniculata_contig19192.4828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig19192:4575..4772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGAGATTCACCTGCTGAGGTCTAAGGACGACGCCTTCAGCACGTTCCA GTCATTCGTGCAATCGGTGGTGGTTCCAAGTGGTTTCCGCGTCGAGCGGT TAAGGGCCGACCAAGGAGGCGAGTACATCGGCAAGGCATTCACGGACTAC TATCTTCAGATAGGGGTGTCGCTCGAGCACGCAAGCACCAATACGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig19192:4575..4772+

>mRNA_H-paniculata_contig19192.4828.1 ID=mRNA_H-paniculata_contig19192.4828.1|Name=mRNA_H-paniculata_contig19192.4828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig19192:4575..4772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGAGATTCACCTGCTGAGGTCTAAGGACGACGCCTTCAGCACGTTCCA
GTCATTCGTGCAATCGGTGGTGGTTCCAAGTGGTTTCCGCGTCGAGCGGT
TAAGGGCCGACCAAGGAGGCGAGTACATCGGCAAGGCATTCACGGACTAC
TATCTTCAGATAGGGGTGTCGCTCGAGCACGCAAGCACCAATACGTAGAC
AGAGATTCACCTGCTGAGGTCTAAGGACGACGCCTTCAGCACGTTCCAGT
CATTCGTGCAATCGGTGGTGGTTCCAAGTGGTTTCCGCGTCGAGCGGTTA
AGGGCCGACCAAGGAGGCGAGTACATCGGCAAGGCATTCACGGACTACTA
TCTTCAGATAGGGGTGTCGCTCGAGCACGCAAGCACCAATACGTAG
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