prot_H-paniculata_contig19187.4823.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig19187.4823.1
Unique Nameprot_H-paniculata_contig19187.4823.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length62
Homology
BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: A0A6H5KTL2_9PHAE (SRP54 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL2_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 3.150e-27
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGYTVR 61
            VGIS LVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGE L DLRDFEPVLFVDSLLGY+VR
Sbjct:  310 VGISALVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGESLYDLRDFEPVLFVDSLLGYSVR 370          
BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: D7FVJ7_ECTSI (PFtsY, plastid signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ7_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.100e-25
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGYT 59
            VGIS LVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGE L DLRDFEPVLFVDSLLGY+
Sbjct:  396 VGISALVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGESLYDLRDFEPVLFVDSLLGYS 454          
BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: A0A835ZC86_9STRA (PFtsY, plastid signal recognition particle receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC86_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.910e-23
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = 0
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGYTVRT 62
            VG+SGL VTKLDGTAR GFVVSIV DLGVPVKLIGVGEGL DLRDF+  LFVD+LLGY+  T
Sbjct:  308 VGVSGLAVTKLDGTARAGFVVSIVRDLGVPVKLIGVGEGLTDLRDFDAELFVDALLGYSAET 369          
BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: A0A1X6P5F8_PORUM (SRP54 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P5F8_PORUM)

HSP 1 Score: 92.8 bits (229), Expect = 3.870e-22
Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 0
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLG 57
            VG+SGLVVTKLDGTAR GFVVS+V +LG+PVKLIGVGE ++DLRDF+PVLFV+ L+G
Sbjct:  137 VGVSGLVVTKLDGTARAGFVVSVVDELGLPVKLIGVGESVDDLRDFDPVLFVEGLVG 193          
BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: K8Z941_NANGC (Fused signal recognition particle receptor n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z941_NANGC)

HSP 1 Score: 95.1 bits (235), Expect = 8.730e-22
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 0
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGY 58
            VGI+GLV+TKLDGTARGG VVSIV D+GVPVKLIGVGEG++DLRDF P  FVD+LLGY
Sbjct:  277 VGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGIDDLRDFNPEDFVDALLGY 334          
BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: A0A4D9DHK9_9STRA (SRP54 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DHK9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.070e-21
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 0
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGY 58
            VGI+GLV+TKLDGTARGG VVSIV D+GVPVKLIGVGEG++DLRDF P  FVD+LLGY
Sbjct:  377 VGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGIDDLRDFNPEDFVDALLGY 434          
BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: W7U0S2_9STRA (Signal recognition particle-docking protein FtsY n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0S2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.360e-21
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 0
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGY 58
            VGI+GLV+TKLDGTARGG VVSIV D+GVPVKLIGVGEG++DLRDF P  FVD+LLGY
Sbjct:  377 VGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGIDDLRDFNPEDFVDALLGY 434          
BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: A0A7S2FBA6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBA6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 9.530e-21
Identity = 39/58 (67.24%), Postives = 51/58 (87.93%), Query Frame = 0
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGY 58
            VG+SG+++TKLDGTAR G+VV +  DLG+PVKLIGVGE ++DL+DF+P  FVD+LLGY
Sbjct:   30 VGVSGVIITKLDGTARAGYVVGMTRDLGLPVKLIGVGEKIDDLQDFDPPAFVDALLGY 87          
BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: A0A7R9YFI8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFI8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 7.930e-20
Identity = 41/58 (70.69%), Postives = 52/58 (89.66%), Query Frame = 0
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGY 58
            VG++G+VVTKLDGTARGGFV+S V +L +PVKL+GVGEG++DLRDF+   FVD+LLGY
Sbjct:  123 VGLTGMVVTKLDGTARGGFVISTVRELKLPVKLVGVGEGIDDLRDFDAPAFVDALLGY 180          
BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: F0YKD1_AURAN (SRP54 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKD1_AURAN)

HSP 1 Score: 88.2 bits (217), Expect = 4.570e-19
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 0
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGYTVRT 62
            VG+SGL VTKLDGTAR GFVVS+V DLG+PVKL+GVGE L+DLRDF+   F+DSLL    R+
Sbjct:  297 VGVSGLAVTKLDGTARAGFVVSVVEDLGIPVKLVGVGEALDDLRDFDVDAFLDSLLDVDARS 358          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTL2_9PHAE3.150e-2793.44SRP54 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FVJ7_ECTSI2.100e-2593.22PFtsY, plastid signal recognition particle recepto... [more]
A0A835ZC86_9STRA2.910e-2380.65PFtsY, plastid signal recognition particle recepto... [more]
A0A1X6P5F8_PORUM3.870e-2277.19SRP54 domain-containing protein n=1 Tax=Porphyra u... [more]
K8Z941_NANGC8.730e-2281.03Fused signal recognition particle receptor n=1 Tax... [more]
A0A4D9DHK9_9STRA2.070e-2181.03SRP54 domain-containing protein n=1 Tax=Nannochlor... [more]
W7U0S2_9STRA2.360e-2181.03Signal recognition particle-docking protein FtsY n... [more]
A0A7S2FBA6_9STRA9.530e-2167.24Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7R9YFI8_9STRA7.930e-2070.69Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0YKD1_AURAN4.570e-1969.35SRP54 domain-containing protein n=1 Tax=Aureococcu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPFAMPF00448SRP54coord: 1..57
e-value: 1.4E-16
score: 60.7
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPROSITEPS00300SRP54coord: 30..43
IPR042101Signal recognition particle SRP54, N-terminal domain superfamilyGENE3D1.20.120.140coord: 46..55
e-value: 1.9E-18
score: 68.7
NoneNo IPR availableGENE3D3.40.50.300coord: 1..45
e-value: 1.9E-18
score: 68.7
NoneNo IPR availablePANTHERPTHR43134FAMILY NOT NAMEDcoord: 1..57
IPR004390Signal-recognition particle receptor FtsYPANTHERPTHR43134:SF7CELL DIVISION PROTEIN FTSY HOMOLOG, CHLOROPLASTICcoord: 1..57
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19187contigH-paniculata_contig19187:254..439 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19187.4823.1mRNA_H-paniculata_contig19187.4823.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig19187 254..439 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig19187.4823.1 ID=prot_H-paniculata_contig19187.4823.1|Name=mRNA_H-paniculata_contig19187.4823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVL
FVDSLLGYTVRT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000897SRP54_GTPase_dom
IPR042101SRP54_N_sf
IPR004390SR_rcpt_FtsY
IPR027417P-loop_NTPase